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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057372 ID=TCONS_00057372|Name=TCONS_00057372|organism=Clytia hemisphaerica|type=transcript|length=4895bpRun BLAST on NCBI protein sequence of TCONS_00057372-protein >TCONS_00057372-protein ID=TCONS_00057372-protein|Name=TCONS_00057372-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1370bp MADEIESRKTRFLTLQKRLKEERQFVKHEKEQLRRLNEKALSVSQNLFCSRun BLAST on NCBI transcript from alignment at scaffold_288:466206..479498- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057372 ID=TCONS_00057372|Name=TCONS_00057372|organism=Clytia hemisphaerica|type=transcript|length=13293bp|location=Sequence derived from alignment at scaffold_288:466206..479498- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_288:466206..479498- >TCONS_00057372 ID=TCONS_00057372|Name=TCONS_00057372|organism=Clytia hemisphaerica|type=CDS|length=61695bp|location=Sequence derived from alignment at scaffold_288:466206..479498- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00057372 vs. Swiss-Prot (Human)
Match: GAPD1 (GTPase-activating protein and VPS9 domain-containing protein 1 OS=Homo sapiens GN=GAPVD1 PE=1 SV=2) HSP 1 Score: 364.77 bits (935), Expect = 1.477e-103 Identity = 171/365 (46.85%), Postives = 254/365 (69.59%), Query Frame = 1
Query: 3139 DEEFKFEDAKRKLRTVFCTAD-----------QTNLPSDARSFDQLLLTMLQAKLAEAINLQDRFAVAQLHETLRSIKQLPNGSCEKLIERLEQDYEQRSKYISYLIKSKQGLLSTISHMEQITAKMQRDKIICSRYFTTLSVRLFLETPERKQDLMQFAYRFASNKMLDEKSTLLTDFLNDMHSNLIKESTWSHCTDDQLEDAQVATERALMSKIFKEAFYPNGLTDVDNDRIFHQHIKSLSTVISLSHPALQIPKMYQKEAPWPSAQTELLMVNAYKTAADKLACIHRCCVTIMNLLSMASEKSTPGADDFLPVLVYVVIRANPPNLLSTKQYVNTFYESRLSGEEYYCWMQFCSAIEFIKTM 4200
D F + DAK+KLR C+AD + LP D ++ L+ ++AEAINLQD+ +AQL ET+R + + N +C KL+ + +DY +R+ YI+YL + +QGL +T +H+E++ ++ RDK + +RYFTT+ VRL LE+ E+K + +F F D+K+ + DFL ++ + ++ W + +++QL+DAQ+A ER++M++IFK AFYPN D+ D++ H+HI+ LS V++ +H ALQIP++Y +EAPWPSAQ+E+ ++AYKT DK+ CI R C TIMNLLS+A+E S PGADDF+PVLV+V+I+ANPP LLST QY+++FY S LSGEE Y WMQF +A+EFIKT+
Sbjct: 1112 DSAFSYRDAKKKLRLALCSADSVAFPVLTHSTRNGLPDHTDPEDNEIVCFLKVQIAEAINLQDKNLMAQLQETMRCVCRFDNRTCRKLLASIAEDYRKRAPYIAYLTRCRQGLQTTQAHLERLLQRVLRDKEVANRYFTTVCVRLLLESKEKK--IREFIQDFQKLTAADDKTAQVEDFLQFLYGAMAQDVIWQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRALQIPEVYLREAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADDFVPVLVFVLIKANPPCLLSTVQYISSFYASCLSGEESYWWMQFTAAVEFIKTI 1474 HSP 2 Score: 237.654 bits (605), Expect = 5.380e-63 Identity = 190/646 (29.41%), Postives = 333/646 (51.55%), Query Frame = 1
Query: 154 TLQKRLKEERQFVKHEKEQLRRLNEKALSVSQNLFCSEWKTRKQWMNIDRLI--SNKSTPSECSITAKIIDSVSFEDAGSHLNYLDSKYGEFLSSMRDNPKLVAHILNYCDSXXXXXXXXXXXXXXISTLYGTCAEKKDELSVLRILTDLVNLQVLECEDLLQFFCGKRSNDNAFASVFTVFSEMLFSSKLYLTAALHGTVMQVIVDDGIFLEVDLDKVVGRIPTKVVLEKFGPPQTVXXXXXXXXXXXXXXDHIINLCKKFLKSMYDKIYCFPQSLRWAIGQLYKGMIEXXXXXXXXXXXXISYMLMTYFICPAIINPEPYGINSDADISETARNNLSLIASILRSQALLECGLKEEKFRSILERLEQGKLISYVSHLLNGA-------SNIAIVGGRELPEVERSSLMITEHDLKCLVNCLKLVQSHNVASXXXXXXXXXXXXXXIPRKWVKEISSNRDMTQSMPPNSRLIGDPSPVPPPRHNKLKKAISTSGGTVSVEKSFMDQLKADLNTMVS-SSDVVLIIPLGNDSGEHPGMLSEDKVLGLKSQLPASNSFDMDTMENDLTKRTHNIM--------MDALRETLPDVDKNL--LDLSNENLDTISGSSIGSTHNDELLSIKSKQETQKQS--DTLDGFDI 2025
TL LK+ER +V EK+ ++RLN L ++ L+ + W ++Q +N+DRLI S +++P+EC AKI++ F D L + ++ YGEFLS +R+NP+L+A L + Q T+ + + ++LYG C ++DE +L++L L+ ++ E ++ + R AF+ +F +FSE LFS+KL+LTA LH +MQ++V+D LE D +K++ R + FG + ++K+++ ++ ++ L KF+ + YCFP SLRW + Q+YK + +L +A+ + +L+ FICPA++NPE YGI SDA I+E AR NL + +L+ A+ + + +S L + ++ + +++ ++ G S++ ++ G + R+ + IT L LVN +K V S + + + L P P K K SS+ +MT P N+ + P+ P + N+L A + T + MD + T+ + VL+I LG PGM+SE++VL + QL D+ EN L + + ++ + E + ++ LDL E++ + GS + L ++ +Q T + + D L F+I
Sbjct: 8 TLAHHLKQERLYVNSEKQLIQRLNADVLKTAEKLYRTAWIAKQQRINLDRLIITSAEASPAECCQHAKILEDTQFVDGYKQLGFQETAYGEFLSRLRENPRLIASSL-VAGEKLNQENTQSVIYTVFTSLYGNCIMQEDESYLLQVLRYLIEFELKESDNPRRLL---RRGTCAFSILFKLFSEGLFSAKLFLTATLHEPIMQLLVEDEDHLETDPNKLIERFSPSQQEKLFGEKGSDRFRQKVQEMVESNEAKLVALVNKFIGYLKQNTYCFPHSLRWIVSQMYKTLSCVDRLEVGEVRAMCTDLLLACFICPAVVNPEQYGIISDAPINEVARFNLMQVGRLLQQLAMTGSEEGDPRTKSSLGKFDKSCVAAFLDVVIGGRAVETPPLSSVNLLEG-----LSRTVVYITYSQLITLVNFMKSVMSGDQLREDRMALDNLLANLP-PAKPGK--SSSLEMT---PYNTPQLS-PATTPANKKNRLPIATRSRSRTNMLMDLHMDHEGSSQETIQEVQPEEVLVISLGTGPQLTPGMMSENEVLNM--QLSDGGQGDVPVDENKLHGKPDKTLRFSLCSDNLEGISEGPSNRSNSVSSLDLEGESVSELGAGPSGSNGVEALQLLEHEQATTQDNLDDKLRKFEI 635 The following BLAST results are available for this feature:
BLAST of TCONS_00057372 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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