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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057363 ID=TCONS_00057363|Name=TCONS_00057363|organism=Clytia hemisphaerica|type=transcript|length=2013bp
CAAAAAGACattatgtatactttattggtAGCAGGAATATTTTTAACGAC
TTTAACAACGGCTTATGAAGCCAATCGTAAATGTGAACCCAACAGGGCGG
CGCTTTGCAAAAACTTATACAACTCGACACGGTTTCCGAATTTCGTGAAA
CATCGGTCACAGGTAGATGCAATTATCGAATTAAACCAGTATAAACAACT
CATTGATATCGAGTGTGCGCCTCATTTGAGATTGTTTTTATGTTCAGTTT
TGATGCCAATGTGTACTATgcttgaagaaaatattttaccatGTAGATCG
CTCTGTGAAGAGTCAAAAGCTGGTTGCGAAACAGTTTTATTGAACTTTGT
GGGCTTACCGTGGCCTGATAGGTTGAAATGCGATCAGTTTCCTGTCAGTG
GTAGCGGACAAGTTTGCGTGGAGAACAAGAATGCTCAGCCTAACAAAAAA
ACGTGGGtggACCCCAACAAGCGaagcaaaatgactgaaaaAGAGAAAGC
CATTCTTATTTGTAGTAAAGGCCAAAAGATTCGGTTCCGTAAGATAGTgc
acgaaaataaaaattgcaaGCGTCACATCTCTCAAGAAGCGATACGTAAG
AAATGTGATGGGGAACATACTTGTGAGTTCACGCTCAAAGACCTCACCAA
TGAAAGAGGACAAGGGAAAGGTTGCAGACCCGGTAAAATTGGTTCAGCGA
GCATCAAGTACCAATGTTATAAAGACAAACCGCCAAAGCAGATCCATTTG
AAATATCGCCAAGATGCATTCCTTCTCTGCAAAAGCGCTAATCGAAGAAT
CAATATCTTGAAAGTTCAGTACCGCGACGAGAAAGCGGCCGACACCTGCA
TCACACCGAACGCCTTCTGTAGCGTAACACAATCNCGACGAGAAAGCGGC
TGACACCTGCATCACACCGAACGCCTTCTGTAGCGTAACACAATCATGTA
CTGGAAAACAGAATTGCGCTTTGTATTCCGATAACTCATTTATACCCAGT
CCCTGTAAAAATCTAAAACCGAAACTCATTGTTGATTATGAATGTGAAAA
AACATTACCTGATGAAAAAGTTGTTCAAGACTTTTGGGAAAACATCGAGT
TAAAATGTCCTGCGGGTAAACTGTTGAACATTGTGCGGGCTGAGTACATT
GGATCGTTATGCAGTAGTAAGAACATTCACTGTGCTGTCAATTTATATTG
TAAGAAGAAACAAAACTGTATTCTTAAAAATTCTGATCAGCGAGCTGTCC
AATGTAAAGACGAGCGGAGTAAAGTTAGTATCCGCTACGCGTGTACTTGA
AGAAAAGCCGTGTTTTCAGGTGATGATAGAAATAGAGTGTTTTTGCGAAG
CCCTTTCCGCtttaatgaaaaattctctTTGGAAAGTCGCGAAAACGTAT
TAAAATTTGGGATTAATGCAACAATGAATGACTCAATGATGGTGATGATG
ACTCAATGATGGTCAGGTTGGTTTGACGTCGCATTGATGGAAAAGTGATA
TTTCTTTCCAAAAGACTTTCTGTTGCAAGATGGATACAGAATTTGATGTT
ATTGTTTCAGTGAATTTTATCTTGATAAAcgataattttacgataatttc
tAGATTTTATAAATATCTCTAGATATATAGCAGACTGAAGCAAATTTTCC
GTCAATTCCTAATAGATTCGAGACTGTTAGCAGGTCTGtctttagtctga
atcgcagacctctacaaaaccccaggtagtataaggagcacgaatccgtt
agtggatgccagcagcctagtcTGTCTTAGAAAAGGGGCGcatttttaag
acaaaaatgttttgcttttttcacattttgattTACTTGATGAAGAAAGA
CCCAGGgacgattttttttatttttttaataaaatatccaaatgacattt
tttgtttaaaattgtaaatttttaagaattaattaattttttttattttc
atacattttgtttttttttcttcggaatgtaaaaagatagTAAAGTTAGT
GACGTAGTTAAAA Run BLAST on NCBI transcript from alignment at scaffold_288:400884..406648- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057363 ID=TCONS_00057363|Name=TCONS_00057363|organism=Clytia hemisphaerica|type=transcript|length=5765bp|location=Sequence derived from alignment at scaffold_288:400884..406648- (Clytia hemisphaerica)
CAAAAAGACATTATGTATACTTTATTGGTAGCAGGAATATTTTTAACGAC
TTTAACAACGGCTTATGAAGCCAATCGTAAATGTGAACCCAACAGGGCGG
CGCTTTGCAAAAACTTATACAACTCGACACGGTTTCCGAATTTCGTGAAA
CATCGGTCACAGGTAGATGCAATTATCGAATTAAACCAGTATAAACAACT
CATTGATATCGAGTGTGCGCCTCATTTGAGATTGTTTTTATGTTCAGTTT
TGATGCCAATGTGTACTATGCTTGAAGAAAATATTTTACCATGTAGATCG
CTCTGTGAAGAGTCAAAAGCTGGTTGCGAAACAGTTTTATTGAACTTTGT
GGGCTTACCGTGGCCTGATAGGTTGAAATGCGATCAGTTTCCTGTCAGTG
GTAGCGGACAAGTTTGCGTGGAGAACAAGAATGCTCAGCCTAACAAAAAA
ACGTGGGGTAAGAATCAATTTTTCGTTTCCCAACTGATATGTTACGTCAA
GACAACGTTCATTTAACGCCTATAGGCTATTTCAAAGTCGCAAAGCGTAA
TGGGAAATCAGTACCTCTGCGCGCTAATGACGACTTTTGGTCCAAAGTTT
TGAAAATTCTCAAAGATTGTTGCATCTAGCCAACTGGAAGTCGTTACTAG
AGTGCAACCAGTCCTGATTACCCATGATTCATTTTGATTGTGAAATGCCC
TAAACACCTGTCATCTCCTGAAAGTTTTTCGTCCATATTAGTGCCATGAA
CCTATAAATTTCAATAAGTATACACATGTTATTCTTAATTTTTACAACAA
TGCACCAATAACGCTCGAATCACGTTCGATGGGCATTGTAACAACTTCTC
CTAATTCTGTCAATAGAGAGCGTACTTGGTAAAATGATGGAAGATATCTC
CATTTTTAATCATGAGAACAACAACGATACATAGCAACTTCCGTACATGC
TCCACTTCTGTCTACATTCCTGAACTTTGCTACTAACGATTTCCTGGTGG
TACCGCCCTTTGCGTCTCTACCCCGCCTCTTTCCTTGCTGAGCGAATTAG
TGACCGACATACCTTCCTAGATAGCTTATGGCTCATTGAAAACGGATCTT
CTCTTAATTCCTAATTTAGATTTTTCTGAAAAATTCAATTTATTAATTTA
TATCCTTCCCGAAAAATGCGCATGCCATGATTTACGCGAAGTTGAACTCC
GGACGCGTAGGCGTGGATTGAAATTCAAAAATTACGGAAACGAAAATTAT
GAAAAACTAAATTAAGCCATTTTATTTATAGCCAAAATAAATGGCAATGG
AAAATAGTTAAGTGTCTCCAAATAATCTTTGTTTTTATTGGCTTTTGGTT
TTTCTCTTGACGCCTTCGTAGAAGTGTGACTACTTTTACTATAGCAATGC
AGCTCAACTCTAAACCGTTTCAGCAGGCTAAACATTAGACTGTATGACAG
TCGTTTTTTCTTACTCACATATCGGGAAAATTAAGTCGAAACAGGATGAT
ACAGAAAAGTCTCCATGACTCAAACGCGCACAGGGAACACAAATTTGTTC
GAGTTAAGGTCTAAGGAGACTTAAGGTTTAATAAGGAACTATTAACTGAA
GGGACAGTTAAAATTGTTCCAATTAAGGAGACATTCAAGTTATAGAGATT
CGAGTTAAAGAGACTCTACTTCTATAATAATCGGGAAAAACCGCGAGATT
AGCTTGGAAATAACGTATAGTGATTGTATAAGTGTAAGGAGATAATTGGC
TGCAGCGTTATAGGCGGCTATATTTAACTATTCTTAACACCGTTTTAAAA
GTTCGTAAGGTTTCGAGATAAGGGATATAAATTGAGTGAATGTTTTGCGT
AGAATTTTTGGCTGTGATTGTTTACACTGTCGATGATACAGTGGTCAATC
TGGGGTTTTAATGCATTTACAAAAACAAACTTTTCTTTAGAGTATTGACG
TATTTGAAGTTCAACTTTGAAGTAGGTCATCGTTGAATAATCACTCAACA
CTCAACTTCCTGACTTGAGAACTCTATCCATTTGTTTGTTGCGCTCTCGG
GGATTGAGGAAGAATTCTCCTTTCAATGTTAACTTTTTTGTTCCTATATG
TTTGCATTTTTATGACTTTGATAGAACTCACGAATAATTTCTCTAGGAAA
TTTCTTAGGATTAGCACAACAAAATATTCACAAAATAGTGAGAAAAAAAA
ACGTTTTTAGAACATTTTAGGCTTACGACTCAAATACTTAAGAATATCGA
AAGGCTTTAAAACGCAGGTACCCTTGAACCGTCTTCACTCGTTTTTAGCC
TGTAGTCATAAAATAAAATTGATATCCAGTCTGCTTTTTTGAAAGGTGTC
AAAAAGAGGCTTTTGCAATTCACACCTTCTAAAACGGTTCCTCCCTCCTC
AATATTATGAGATTGGATGGCAATTAACAGTTTTAATTAATCACTTAACT
CCAGCCCCTATTTGTCGAGATGTCTGTTATTTATGACGTCTTCATAACAA
TTAAGAGATCTGTAAATATTGTGTCCGGACTGTCTGACGCGTTTTTGTAC
ATCCCTCCCCTTTTCTTCGCTGGAATTTCGAGCTATCATTTCTATTTTCT
TTTTAGTGGACCCCAACAAGCGAAGTAAAATGACTGAAAAAGAGAAAGCC
ATTCTTATTTGTAGTAAAGGCCAAAAGATTCGGTTCCGTAAGATAGTCCA
CGAAAATAAAAATTGCAAGCGTCACATCTCTCAAGAAGCGATACGTAAGA
AATGTGATGGGGAACATACTTGTGAGTTCACGCTCAAAGACCTCACCAAT
GAAAGAGGACAAGGGAAAGGTTNTGGCAAATTCTTGATATTATGTAAAAT
TATAATCAAACTTCTGCTCACCATCCAAAACAAACATTATCGAGCTATCA
TTTCTATTTTCTTTTTAGTGGACCCCAACAAGCGAAGCAAAATGACTGAA
AAAGAGAAAGCCATTCTTATTTGTAGTAAAGGCCAAAAGATTCGGTTCCG
TAAGATAGTGCACGAAAATAAAAATTGCAAGCGTCACATCTCTCAAGAAG
CGATACGTAAGAAATGTGATGGGGAACATACTTGTGAGTTCACGCTCAAA
GACCTCACCAATGAAAGAGGACAAGGGAAAGGTTGCAGACCCGGTAAAAT
TGGTTCAGCGAGCATCAAGTACCAATGTTATAAAGGTAAGCGAGACAGAG
TTTGTTTTTTTGTATTGACTTGATTCCTAGGTGGAGAGGCCGCCTTTAAG
GTTAAGTCTTTCAGGCTTCAAAAGTGCACTGTAAGGGTCAATATTAGAGA
AAGTGCACTCGAAGGGTGTAAAAATTGAGTAAAAACTATTAGCTGTGAAA
TTCTGGAAAAACGGACCTTTTGTTGCCTTCTAATGGAAAAAAACCTTCGA
GAAAATGCATCGCGAGGGTCGATTTTCAAAATTTGGCTTAATTTAAGAGC
TCTAAGGGCTAGACGTGATTTCTAAATCGCCTTCACTTTTAAGACATTTT
GTCTGGTATTTGAACCAATATGCAAGCAGCTACTTATCGATCATAAAAAC
AAACTTTAGGAAGAAAAAATCTTCTCACGTTACCATTTGCGTTCAAAAAT
TATTATTGACTCAATCTAACGTTACTTTAAACCTATATTACAGAATTGCA
CACGCCATTATAGATTTTATCTTTTTGTAAAAGAAACCTTTCTATTCTCA
AACTAGAAATTCAAGAAGATTTCGATGGTTTTGTGACGAACTCCAATAGA
CGATATCGGCTTTCCGAATTCTCCCCGAATGATTACCCATGATGCATTGC
GCAAAAAAATTCACGGACAATATTGACTTACTGAATTTGTTTGCGCAATG
CATCATGGGTAATCATTCGGGAGAATTTCGTTAAGCCGATATCGTCTATT
GATATAATATCCTTTATCCTTATAGGAATCTAAACTTATTCATGATATTT
ACGACGCAATGTTTTTCTACAGAAACACCCCTGTTTTGACAGTGGCGGAA
ATTTATGCTAGAGAAAATTTGTTTAAAATTGTCATTACTGGAAAAAACCG
GGGTGTTTCTGTAGAAAACATCATTGAATGAATATCATAAACTAAGTGGT
TTTTAAGGCCTAAAACGTTTATAATTTTCACTAAATTATCAAATTGTTGT
CAATCTCTTCTAGACAAACCGCCAAAGCAGATCCATTTGAAATATCGCCA
AGATGCATTCCTTCTCTGCAAAAGCGCTAATCGAAGAATCAATATCTTGA
AAGTTCAGTACCGCGACGAGAAAGCGGCCGACACCTGCATCACACCGAAC
GCCTTCTGTAGCGTAACACAATCNCGACGAGAAAGCGGCTGACACCTGCA
TCACACCGAACGCCTTCTGTAGCGTAACACAATCATGTACTGGAAAACAG
AATTGCGCTTTGTATTCCGATAACTCATTTATACCCAGTCCCTGTAAAAA
TCTAAAACCGAAACTCATTGTTGATTATGAATGTGAAAAAACATTACCTG
GTAAGCTTTTTCTCTTTCATCCCTGGGGACGAATACTTAAATTCGTAGGG
TCAGCCTCGTTCTCATTTCTGATTGACACTTCTGATAAGGCAATTATTTA
CGGCTATGTTTGACATTTGGAAGGTGGGTGGAACTGCTTCACTTTTACTT
TGAGTTCTGTAACTCACTTGAGTAATGCACTTGGAACAATGTTAGAATGG
TATGGGGACTACTCAAATATATTCTTCACTGAAATGGATTTAGATTATTA
AGTACCTTTGAAAAATTCGGGTAAAAATTTATAATATTTTCTCTTTGTTG
TCTTTTCTTATAGATGAAAAAGTTGTTCAAGACTTTTGGGAAAACATCGA
GTTAAAATGTCCTGCGGGTAAACTGTTGAACATTGTGCGGGCTGAGTACA
TTGGATCGTTATGCAGTAGTAAGAACATTCACTGTGCTGTCAATTTATAT
TGTAAGAAGAAACAAAACTGTATTCTTAAAAATTCTGATCAGCGAGCTGT
CCAATGTAAAGACGAGCGGAGTAAAGTTAGTATCCGCTACGCGTGTACTT
GAAGAAAAGCCGTGTTTTCAGGTGATGATAGAAATAGAGTGTTTTTGCGA
AGCCCTTTCCGCTTTAATGAAAAATTCTCTTTGGAAAGTCGCGAAAACGT
ATTAAAATTTGGGATTAATGCAACAATGAATGACTCAATGATGGTGATGA
TGACTCAATGATGGTCAGGTTGGTTTGACGTCGCATTGATGGAAAAGTGA
TATTTCTTTCCAAAAGACTTTCTGTTGCAAGATGGATACAGAATTTGATG
TTATTGTTTCAGTGAATTTTATCTTGATAAACGATAATTTTACGATAATT
TCTAGATTTTATAAATATCTCTAGATATATAGCAGACTGAAGCAAATTTT
CCGTCAATTCCTAATAGATTCGAGACTGTTAGCAGGTCTGTCTTTAGTCT
GAATCGCAGACCTCTACAAAACCCCAGGTAGTATAAGGAGCACGAATCCG
TTAGTGGATGCCAGCAGCCTAGTCTGTCTTAGAAAAGGGGCGCATTTTTA
AGACAAAAATGTTTTGCTTTTTTCACATTTTGATTTACTTGATGAAGAAA
GACCCAGGGACGATTTTTTTTATTTTTTTAATAAAATATCCAAATGACAT
TTTTTGTTTAAAATTGTAAATTTTTAAGAATTAATTAATTTTTTTTATTT
TCATACATTTTGTTTTTTTTTCTTCGGAATGTAAAAAGATAGTAAAGTTA
GTGACGTAGTTAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057363-exon-scaffold_288-1575043694:406192..406648 | TCONS_00057363-exon-scaffold_288-1575043694:406192..406648 | Clytia hemisphaerica | exon |
| TCONS_00057363-exon-scaffold_288-1575043694:403464..403730 | TCONS_00057363-exon-scaffold_288-1575043694:403464..403730 | Clytia hemisphaerica | exon |
| TCONS_00057363-exon-scaffold_288-1575043694:402149..402485 | TCONS_00057363-exon-scaffold_288-1575043694:402149..402485 | Clytia hemisphaerica | exon |
| TCONS_00057363-exon-scaffold_288-1575043694:400884..401835 | TCONS_00057363-exon-scaffold_288-1575043694:400884..401835 | Clytia hemisphaerica | exon |
| TCONS_00057363-exon-scaffold_288-1510915933:406192..406648 | TCONS_00057363-exon-scaffold_288-1510915933:406192..406648 | Clytia hemisphaerica | exon |
| TCONS_00057363-exon-scaffold_288-1510915933:403464..403730 | TCONS_00057363-exon-scaffold_288-1510915933:403464..403730 | Clytia hemisphaerica | exon |
| TCONS_00057363-exon-scaffold_288-1510915933:402149..402485 | TCONS_00057363-exon-scaffold_288-1510915933:402149..402485 | Clytia hemisphaerica | exon |
| TCONS_00057363-exon-scaffold_288-1510915933:400884..401835 | TCONS_00057363-exon-scaffold_288-1510915933:400884..401835 | Clytia hemisphaerica | exon |
| TCONS_00057363-exon-scaffold_288-1491911889:406192..406648 | TCONS_00057363-exon-scaffold_288-1491911889:406192..406648 | Clytia hemisphaerica | exon |
| TCONS_00057363-exon-scaffold_288-1491911889:403464..403730 | TCONS_00057363-exon-scaffold_288-1491911889:403464..403730 | Clytia hemisphaerica | exon |
| TCONS_00057363-exon-scaffold_288-1491911889:402149..402485 | TCONS_00057363-exon-scaffold_288-1491911889:402149..402485 | Clytia hemisphaerica | exon |
| TCONS_00057363-exon-scaffold_288-1491911889:400884..401835 | TCONS_00057363-exon-scaffold_288-1491911889:400884..401835 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_288 | supercontig | scaffold_288:400884..406648 - |
Blast
BLAST of TCONS_00057363 vs. Swiss-Prot (Human)
Match: FZD7 (Frizzled-7 OS=Homo sapiens GN=FZD7 PE=1 SV=2) HSP 1 Score: 125.561 bits (314), Expect = 4.443e-30 Identity = 54/119 (45.38%), Postives = 82/119 (68.91%), Query Frame = 1
Query: 82 CEPNRAALCKNL-YNSTRFPNFVKHRSQVDAIIELNQYKQLIDIECAPHLRLFLCSVLMPMCTMLEENILPCRSLCEESKAGCETVLLNFVGLPWPDRLKCDQFPVSGSGQVCVENKNA 435
C+P LC ++ YN T PN + H +Q DA +E++Q+ L+ ++C+P LR FLCS+ P+CT+L++ I PCRSLCE ++ GCE L+N G WP+RL+C+ FPV G+G++CV +
Sbjct: 49 CQPISIPLCTDIAYNQTILPNLLGHTNQEDAGLEVHQFYPLVKVQCSPELRFFLCSMYAPVCTVLDQAIPPCRSLCERARQGCEA-LMNKFGFQWPERLRCENFPVHGAGEICVGQNTS 166
The following BLAST results are available for this feature:
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