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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057335 ID=TCONS_00057335|Name=TCONS_00057335|organism=Clytia hemisphaerica|type=transcript|length=2525bp
CGTAATCTCAACAGGgcgcaaaatgtaaacaaagctctactttcattttt
atagacAAGTTTGTGGTGGAAGTTCCATCTTATCAGCCTTTCTATTACTT
TTAAAAAGTAATCTGTTCTTCTGTTCTACTCGTTCAAAGTTGTTCATCTA
GTTATTTATAATTTGCAAGATGGAAGAAGTTTTCAAATCGTTTTGTTCTT
TTGGAGCCGGAAAAGATGGAGCAGCTCTCATGGATAATTCCAAATTTGCA
AAACTTGCACGAGATTTAAAACTTTTGGACAAAAAGCTCACTGCAACAGA
TGTTGATATTATTTTCAATCGAACTGAAGTTAAACCAAAAACTGAGCGCA
AAATAAACTTCAAGCAATTCAAAGCTGCTGTCAAATTATTGGCCGAGAAG
AAATATCCTGGAGATGCTGATGGTGCATCAAAACTTGAAGAACTGATTGC
TGCAGGCAAACCAACTGCTAAGGGAGCAACTaaagCAGTAAAAGGTGGAG
CTGTTGATAGACTAACAGATACAAGCAAATACACTGGAAGTCACAAAGAA
CGCTTCGATGAATCAGGAAAGGGCAAAGGCCTTGATGGGCGTAGAGAGAT
GGATAAGAAAGCATCTGAGGGATATGTTGGCGGTTATCAAGGAATGGATA
CCTATGATAAATCTCACTGATTAAATGTAAAAGGAATGTAATATTCGTTT
AGCAATGAACTAGCTCTTTAGTTCTGCTTTTGAAGTagtcaaaattgtat
ttttttagatGCATTTTTTTATCAGTTTTGGAGGTTATTCCCGAGGTGGT
ACTACCCTTGCCACTCACAGGGGTGTGCTGCTGAAGTTTGAAAAATAGGa
accttttttttaaagtggccctgaatgggactgaaacttgcaaatgttct
caaaattttctacttttctccCAAAATCCCCCAAAAAGATATCCTAcaag
ggactgatttttctattttggtgtttttgcgaccccaTCTGGGACTGATG
GACTGttggtgaaaaaaggtaccctgaccagtggAACATTCCCGTACCCT
ATTATTGATATCTTTCCTTTTTACAAGCTTCCCTTCTCTCTCTTTTAAAT
GTAGATTTtcctcatttcaatttttttatgcaaTAAAAGCCCCAAACAAA
TCGTTTCTTTATTACTATATATTTCTTGTTTGATTTTTAAACACAAAGAA
TGAATAAATAGCTTTGGAATCCATTTTTGACATTTAAAAGATTTCAGAAT
TATCTATTTTTATGAAATCTAAGCTATCATCTGGCTTACAATACTAATAT
GTTGTTTCTATTGACTTTCTTTATCAATGATTAATGACAGTTTAGCTTTA
CTATGAATGATAAAAATCGTTTTATAATCTCTTCTCTTCGCTTTATTTAT
TCAGGGTCAGATTAGACCATATCTATTTGAAATAAAGACCTCCTCCACAG
AGGCTCACTTCATGCTTGACATTCTAGCCCGGGTTAAAAAAATGCCGTCT
ATAATTCTAACATTCCAATACTATTTTTTATTCTTACTTAATTTAGATAT
TACTAACTCTTTTAAAGTGTGGATTTCtgttttttatctgaaaaatgttt
taatataTTATTGTACACTTATTGatggaatataattttagaatattttt
gggTGTAATGTTCTCAGTCACTTGTAATTTTCATCATTAGATTTAGTTTT
TATCACTAATTTTTATGcagaataaaaaagatttttgcatcaaatttcat
cgaatattttcCTAATCAAGTACTGTCAAAGGTCTGGACAAAGTTCAAAC
GTTCATAATAGATATATCacaccatagtcattataaaaaaacactggtct
ggcaatgtattgttttagctttattatcgaattttcttttgttataaata
aaaggcaagttgcgatttgcatactttttgatcacgttaccaaattctcc
ttttgggattggtctaaatttcaatcacatgatcaaaaagtatgcaaaat
aaatcgatttgcGAACACAAGCTCTAACtgttaacaatagaaagaaacaa
tagccttccagaccggggttttttataatgactatgatcaCACTAATTAC
TACTGCTAATTACATATCAATTACTTAGTAAGAAATGCATTACATTTGGT
TACACTAAAAGGAATTCTAACAACTTAgataattattttgataatagttt
ttatttgtttgttgaAATGCAGAACCTCTCTGTAagggggttggtctaaa
aagcagggtagccaatggggtcgccaattgggctaggttatggggtacct
ctttttgcctaaacttttgaaatctgaaacctgtttaatgtggaaataac
tattacaacatcttgttaatgattccatgtgataacatttaagattcctt
tcgaacttcagtcacaatagccttttttccaaaggtactgaactttgtta
cttctcaagagacctggcgccgtTTTGTCctccttcttggcttcgtttga
aaatttacagacccgaataaataat Run BLAST on NCBI transcript from alignment at scaffold_288:593035..598007+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057335 ID=TCONS_00057335|Name=TCONS_00057335|organism=Clytia hemisphaerica|type=transcript|length=4973bp|location=Sequence derived from alignment at scaffold_288:593035..598007+ (Clytia hemisphaerica)
CGTAATCTCAACAGGgcgcaaaatgtaaacaaagctctactttcattttt
atagacAAGTTTGTGGTGGAAGTTCCATCTTATCAGCCTTTCTATTACTT
TTAAAAAGTAATCTGTTCTTCTGTTCTACTCGTTCAAAGTTGTTCATCTA
GTTATTTATAATTTGCAAGATGGAAGAAGTTTTCAAATCGTTTTGTTCTT
TTGGAGCCGGAAAAGATGGAGCAGCTCTCATGGATAATTCCAAATTTGCA
AAACTTGCACGAGATTTAAAACTTTTGGACAAAAAGCTCACTGCAACAGA
TGTTGATATTATTTTCAATCGAACTGAAGTTAAACCGTATGTATTTAGTA
TACTCTTTCTTACTCAATAATTGTTTTCTGCCAGTTGCCCAACAGAAACG
TTTTTCCTTGGTTCTGTCGTCATCTTTTTGTGGTTTTTCTACATCCAACT
GCTGATGCATAAGCATAAGGTTTACTGTATTCTAACATAACTAATCCTTT
ATTTTGGAAAGTTACTTATCACTCTACTAACCTATTTCAGAAAAACTGAG
CGCAAAATAAACTTCAAGCAATTCAAAGCTGCTGTCAAATTATTGGCCGA
GAAGAAATATCCTGGAGATGCTGATGGTGCATCAAAACTTGAAGAACTGA
TTGCTGCAGGCAAACCAACTGCTAAGGGAGCAACTGTGAGTAAACATCAT
TTGTGAATGGCATTAAGATTAAATAATATATACAGTGAAGAATATAGTTG
TTTGTGGGATGGGAGAATGTTATCAACAATATTACTATAGcataaatttt
gttaaaattataaCTATACGTCTTTTACAACTGTTACCTACCGCCAGACG
ATCTCAAGCAAACAgaatcgacaatcgaaccagtctaaccaaatcgaacg
caatcgaccgattgaaattcgattgtcgaatctcaatcgaacgtcaaaat
tatgGGTAATgatattcgattggtttgattgttgttcgactggtttgatc
gtcgattccgttcgattaagatcgtctggctttattcttgcagcttccca
acatccaagctttTGCGTtcaacaatagaatttcaatcggtcgattgcgt
tcgatatggttcgactggttcgatcatcgattccgttcgattgagatcgt
ctggctaccgtaagttggtctaatgttgacatccctcttctaatttcgac
atccttctttaaagataggaatgataggaaggttggaatcgcggattgaa
actaatttttttgctaagttatcagttgaggagtccatcagtgattccga
cctttctatcattcctatctttaaagaaggatgtcgaaattagaagaggg
atgtcgatattagaccaatttacggtaggcagttagtcacactaggaaat
taagctttcagaaaaaaacaacatcagtcatctacaggatgcattcatga
tattcatgatgtaatcttttcgttgattgacactctgaatcaaaacattt
ggccgccattattggtggcaaaacaAATGCGTTCCCCAATGTTTTCCAAG
CAAGGACCCccggaaaaaataagaaaagattaaTACAGANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNATACAAAATAGGTTAGCGGGACAATtt
ttttgccaccaataatggcggcAAAGTTGTTACGTCACATCTATTGTTTA
GGcgcaaagattacatcatgaatttgcaacaacaaggatgagagtttacc
tgaatcaagtttgcaagacaattaattaaaacttgaaagtttgaaacaaa
ataaaacgtgcagcagccaaaatcaaccaaccaaaatttgtcattcaaat
CTCGAAACAGTGCTTCGATTCTTAAGGCCTTGTTtgtacgctaaagtaaa
aacaattccgaacatgtaaatgggtcagtgtttgaggtccggcaaaattt
ccaggaaatagcctatctggcatagcgcggatctaggtgggttccgtctc
cccgtagatcttttttttgggaagttgatcttcaaattagttctcaaggt
tagcttggctcaaattttttaatctatggctcaaattttaggcaatttct
catagtttttaaaaatattaatttcattaaaaagcaccgggttatttttt
catgaattcctttagaagttttgcggcacatttttttgcttgaaaatcaG
GTAGACAacatagcgctttcgcagcattaatctttgatatgcattttggc
gggacgctagtgtgactaactgctagggacaagataatttatcttgTTTG
TACTGGCCGAGGGAAAGTGATGTATACTGGAATAATTTGTTATGCAAAAG
ACTGTTGTGTTCTCCTAACATATTTTGTAAACAATATATTATCCTGTGGC
TTTATGTCAAATTCTGTATTGTCTTTCCTAGAAATTACACATAGGAATAG
TATTATCTCAtcatatctttatttttcagaaagCAGTAAAAGGTGGAGCT
GTTGATAGACTAACAGATACAAGCAAATACACTGGAAGTCACAAAGAACG
CTTCGATGAATCAGGAAAGGGCAAAGGCCTTGATGGGCGTAGAGAGATGG
ATAAGAAAGCATCTGAGGGATATGTTGGCGGTTATCAAGGAATGGATACC
TATGATAAATCTCACTGATTAAATGTAAAAGGAATGTAATATTCGTTTAG
CAATGAACTAGCTCTTTAGTTCTGCTTTTGAAGTagtcaaaattgtattt
ttttagatGCATTTTTTTATCAGTTTTGGAGGTTATTCCCGAGGTGGTAC
TACCCTTGCCACTCACAGGGGTGTGCTGCTGAAGTTTGAAAAATAGGaac
cttttttttaaagtggccctgaatgggactgaaacttgcaaatgttctca
aaattttctacttttctccCAAAATCCCCCAAAAAGATATCCTAcaaggg
actgatttttctattttggtgtttttgcgaccccaTCTGGGACTGATGGA
CTGttggtgaaaaaaggtaccctgaccagtggAACATTCCCGTACCCTAT
TATTGATATCTTTCCTTTTTACAAGCTTCCCTTCTCTCTCTTTTAAATGT
AGATTTtcctcatttcaatttttttatgcaaTAAAAGCCCCAAACAAATC
GTTTCTTTATTACTATATATTTCTTGTTTGATTTTTAAACACAAAGAATG
AATAAATAGCTTTGGAATCCATTTTTGACATTTAAAAGATTTCAGAATTA
TCTATTTTTATGAAATCTAAGCTATCATCTGGCTTACAATACTAATATGT
TGTTTCTATTGACTTTCTTTATCAATGATTAATGACAGTTTAGCTTTACT
ATGAATGATAAAAATCGTTTTATAATCTCTTCTCTTCGCTTTATTTATTC
AGGGTCAGATTAGACCATATCTATTTGAAATAAAGACCTCCTCCACAGAG
GCTCACTTCATGCTTGACATTCTAGCCCGGGTTAAAAAAATGCCGTCTAT
AATTCTAACATTCCAATACTATTTTTTATTCTTACTTAATTTAGATATTA
CTAACTCTTTTAAAGTGTGGATTTCtgttttttatctgaaaaatgtttta
atataTTATTGTACACTTATTGatggaatataattttagaatatttttgg
gTGTAATGTTCTCAGTCACTTGTAATTTTCATCATTAGATTTAGTTTTTA
TCACTAATTTTTATGcagaataaaaaagatttttgcatcaaatttcatcg
aatattttcCTAATCAAGTACTGTCAAAGGTCTGGACAAAGTTCAAACGT
TCATAATAGATATATCacaccatagtcattataaaaaaacactggtctgg
caatgtattgttttagctttattatcgaattttcttttgttataaataaa
aggcaagttgcgatttgcatactttttgatcacgttaccaaattctcctt
ttgggattggtctaaatttcaatcacatgatcaaaaagtatgcaaaataa
atcgatttgcGAACACAAGCTCTAACtgttaacaatagaaagaaacaata
gccttccagaccggggttttttataatgactatgatcaCACTAATTACTA
CTGCTAATTACATATCAATTACTTAGTAAGAAATGCATTACATTTGGTTA
CACTAAAAGGAATTCTAACAACTTAgataattattttgataatagttttt
atttgtttgttgaAATGCAGAACCTCTCTGTAagggggttggtctaaaaa
gcagggtagccaatggggtcgccaattgggctaggttatggggtacctct
ttttgcctaaacttttgaaatctgaaacctgtttaatgtggaaataacta
ttacaacatcttgttaatgattccatgtgataacatttaagattcctttc
gaacttcagtcacaatagccttttttccaaaggtactgaactttgttact
tctcaagagacctggcgccgtTTTGTCctccttcttggcttcgtttgaaa
atttacagacccgaataaataat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057335-exon-scaffold_288-1491911889:593035..593370 | TCONS_00057335-exon-scaffold_288-1491911889:593035..593370 | Clytia hemisphaerica | exon |
| TCONS_00057335-exon-scaffold_288-1510915933:593035..593370 | TCONS_00057335-exon-scaffold_288-1510915933:593035..593370 | Clytia hemisphaerica | exon |
| TCONS_00057335-exon-scaffold_288-1575043694:593035..593370 | TCONS_00057335-exon-scaffold_288-1575043694:593035..593370 | Clytia hemisphaerica | exon |
| TCONS_00057335-exon-scaffold_288-1491911889:593575..593719 | TCONS_00057335-exon-scaffold_288-1491911889:593575..593719 | Clytia hemisphaerica | exon |
| TCONS_00057335-exon-scaffold_288-1510915933:593575..593719 | TCONS_00057335-exon-scaffold_288-1510915933:593575..593719 | Clytia hemisphaerica | exon |
| TCONS_00057335-exon-scaffold_288-1575043694:593575..593719 | TCONS_00057335-exon-scaffold_288-1575043694:593575..593719 | Clytia hemisphaerica | exon |
| TCONS_00057335-exon-scaffold_288-1491911889:595964..598007 | TCONS_00057335-exon-scaffold_288-1491911889:595964..598007 | Clytia hemisphaerica | exon |
| TCONS_00057335-exon-scaffold_288-1510915933:595964..598007 | TCONS_00057335-exon-scaffold_288-1510915933:595964..598007 | Clytia hemisphaerica | exon |
| TCONS_00057335-exon-scaffold_288-1575043694:595964..598007 | TCONS_00057335-exon-scaffold_288-1575043694:595964..598007 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_288 | supercontig | scaffold_288:593035..598007 + |
Blast
BLAST of TCONS_00057335 vs. Swiss-Prot (Human)
Match: TPPP2 (Tubulin polymerization-promoting protein family member 2 OS=Homo sapiens GN=TPPP2 PE=1 SV=2) HSP 1 Score: 96.6709 bits (239), Expect = 2.341e-22 Identity = 78/166 (46.99%), Postives = 99/166 (59.64%), Query Frame = 2
Query: 173 EEVFKSFCSFGAGKDGAALMDN-SXXXXXXXXXXXXXXXXXXXXVDIIFNRTEVKPKTERKINFKQFKAAVKLLAEKKYPGDA--DGASKLEELIXXXXXXXXXXXXXXXXXXXDRLTDTSKYTGSHKERFDESGKGKGLDGRREMDKKASEGYVGGYQGMDTYDK 661
E+ F F +FG M+N + + K +T+TDVDI+F++ VK K R I F+QFK AVK L +K++ G + + + L+ P GATKA GAVDRLTDTSKYTG+HKERFDESGKGKG+ GR EM GYV GY+G TYDK
Sbjct: 6 EKTFHRFAAFGESSSSGTEMNNKNFSKLCKDCGIMDGKTVTSTDVDIVFSK--VKAKNARTITFQQFKEAVKELGQKRFKGKSPDEVLENIYGLMEGKDPATTGATKATTVGAVDRLTDTSKYTGTHKERFDESGKGKGIAGREEMTDNT--GYVSGYKGSGTYDK 167
The following BLAST results are available for this feature:
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