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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057329 ID=TCONS_00057329|Name=TCONS_00057329|organism=Clytia hemisphaerica|type=transcript|length=3278bpRun BLAST on NCBI protein sequence of TCONS_00057329-protein >TCONS_00057329-protein ID=TCONS_00057329-protein|Name=TCONS_00057329-protein|organism=Clytia hemisphaerica|type=polypeptide|length=576bp MMLRIIVLLLALSWTARCANLRLEENQGCISSTCQRSSSPFARFSQRMKRRun BLAST on NCBI transcript from alignment at scaffold_288:266195..280156+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057329 ID=TCONS_00057329|Name=TCONS_00057329|organism=Clytia hemisphaerica|type=transcript|length=13962bp|location=Sequence derived from alignment at scaffold_288:266195..280156+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_288:266195..280156+ >TCONS_00057329 ID=TCONS_00057329|Name=TCONS_00057329|organism=Clytia hemisphaerica|type=CDS|length=22503bp|location=Sequence derived from alignment at scaffold_288:266195..280156+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00057329 vs. Swiss-Prot (Human)
Match: NEC1 (Neuroendocrine convertase 1 OS=Homo sapiens GN=PCSK1 PE=1 SV=2) HSP 1 Score: 290.812 bits (743), Expect = 6.786e-84 Identity = 184/510 (36.08%), Postives = 285/510 (55.88%), Query Frame = 2
Query: 194 QRMKRSTTS------FNDPMYDQQWYLNDKESAT------MNIKKAWEAGYNGQGVVISVIDVGLQKDHDEFKDRFDQRASYNFIANKDDPTP--DPGN--VHGCKVGGVAAGQANNNQCGVGIAHAAKIGGITAFATGEDDIHQPAALSHANDYVDIYACAWGP--DGVIGNKVGYNLAPGALENGTKYGRQGKGNIYVFATGNEGLRPFNDSCTYDGYVTDVNTLAVTNINFDGTPSMTSERCPSILAAAYARDGAQPITDKTHLMPTAVLENKCTDIFXXXXXXXXXXXXIFALVLQANPNLSYRDIQHIVANTSQNSETIAKEGRWFSNGAGFRVSDRYGFGVLDAMAMINRA--KNWKNVPKRISC---EKEFTTTTV---------IPADASQLSFDVDFTGQNCNIRHLEHVKLVVNLTYTPRKSLQLDLVSPANTLSHMLMGRNFDINFNDIIMFPTMTLHNWGESSVGRWQIKFSNNGPPPQNPGELRYYKLVLYGTETLP 1627
+R KRS FNDPM++QQWYL D +++ W+ G G+GVVI+V+D GL+ +H + +D ASY+F N DP P DP N HG + G A QANN++CGVG+A+ +K+GGI D + +++ +VDIY+ +WGP DG G LA A E G K GRQGKG+I+V+A+GN G + D+C DGY + T+++++ + G +E+C S LA +Y+ + TD+ + +A L N CT+ + TSA+ +A+GIFAL L+ANPNL++RD+QH+V TS+ + +A W NGAG V+ R+GFG+L+A A+++ A + W++VP++ C + +F + IP A + GQ I+ LEHV+ + Y+ R L + L S A T + +L R D + N + M++H WGE+ +G W ++ ++ QN G + +KL+L+GT + P
Sbjct: 106 ERSKRSALRDSALNLFNDPMWNQQWYLQDTRMTAALPKLDLHVIPVWQKGITGKGVVITVLDDGLEWNHTDIYANYDPEASYDFNDNDHDPFPRYDPTNENKHGTRCAGEIAMQANNHKCGVGVAYNSKVGGIRMLDGIVTDAIEASSIGFNPGHVDIYSASWGPNDDGKTVEGPG-RLAQKAFEYGVKQGRQGKGSIFVWASGNGGRQ--GDNCDCDGYTDSIYTISISSASQQGLSPWYAEKCSSTLATSYS---SGDYTDQR--ITSADLHNDCTETHTGTSASAPLAAGIFALALEANPNLTWRDMQHLVVWTSE-YDPLANNPGWKKNGAGLMVNSRFGFGLLNAKALVDLADPRTWRSVPEKKECVVKDNDFEPRALKANGEVIIEIPTRACE--------GQENAIKSLEHVQFEATIEYSRRGDLHVTLTSAAGTSTVLLAERERDTSPNGFKNWDFMSVHTWGENPIGTWTLRITDMSGRIQNEGRIVNWKLILHGTSSQP 598 The following BLAST results are available for this feature:
BLAST of TCONS_00057329 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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