TCONS_00057328 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057328
Unique NameTCONS_00057328
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2000

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057328 ID=TCONS_00057328|Name=TCONS_00057328|organism=Clytia hemisphaerica|type=transcript|length=2000bp
GATTTACTTTAAAGACAAAATATTTGTGTGTTAtggaattgaaaaatgaa
aatgatgaagAGGAAAGTTTGTTGTCACAACAAGACAACCATGATGGAGG
GAATATCAACAAGATAAACACCGTTATCGAGAAACTGGGTATAGGTCGTT
TCTCATACTGGCTCATTTCGCGACTGTCGACCGTTTATTTCACGTATGGT
GCCGAGATGACAATGCTCGGAATCATTGCTCCTTTCTTCAAATGTGAATG
GAATTTGACTGGATTTGAATTGGGTTTTATGACGTCTACAAATCTGATTG
GCCAAGGAGTGGGGTTTGTTTTTTGGGGATGGATGGGTGACAAATTTGGT
CGAAAGCCAGTGCTACTGACAAGTCTCTTCATTGCAATGCTGTTTAGTTT
CCTGACTGTTTTTTCGACCGGTTATTTGCTGTTTGCACTTTTCCGTGGAA
TTGTTGGTATTGGGATCGCTTCATTTCTCTTTCCCGCATGTTTGTTATCC
GAATACTTACCCACCCGCATTCGTGGAATCGGAATTCTTGCAAGCATGAT
CAGTTACAGTCTTGGCTCGATTTTTGTGGCTTGgatagcaaaaatatttt
tgcttcaaaataagTGGCGTCTTTTCTTTATTGTTGTAAGTGCACCGATT
GTGATCGCCCTCGCTGCCTCCATTACTTTACCAGAATCGATCCGATTCTT
AGCgaataaatcaaaaattgataaacttCGAACGATTCTACAACACATTG
CCAAAGCCCACCACAAGGAGTTATCAAACGAGGATATAGATAATATTCGC
CCTTTGCAAGGACAACAAACGGATGAAAACTTTCGGATGATCTTCCGAAA
AGATCGATTGCCAAAGCTGTTAGCAGTCATTGTCACATTGTCTGCATGTT
TGTTGAATTTTTATGGTTTTATTATCTGGAACACAGATCTCCAACAACGT
TACTTCTCATCACCTCAAAATGAAACGTCAACAAAATGCCATAAACTCAC
TCCAGCTGATTACAATCAGAATATGATTGTTGCAGTTAGTGGACTCTTGG
GGACCTCTTCAAGTCTAATACTAGTAGATCTGATCGGCCGTAAAAAGCCA
GTTATTATTAGTCTGCTTGCTGTATCGCTATTGATTTTATCCTTGAACTT
TCGAATGTCATTTATAACTTTTTCATCCATAATGTTTTTGGGCCGCGGAA
TCATCTCAACCGGTTTAGCAACAACCAACCTTATATTGAACGAAGTTTTC
GAAACTTCAGTCCGTGCAAAAGTAGGTGGATTTGCGCAGATGATTGGATG
TTGCATCACAGGGTTGGCTCCCTTCTTGATACAGTATGGATCACACTATA
GTATGATGGCTGTCACGGTTGGCATATCTGTGTTCTGTGTTATAGGGGCC
GTCGCCTGTATGACTCTGAAAGAAACTAAAGGGCGGCCCTTAGATGAAAA
AGAGTAGATTTATTATTCATTTGTCAAGTATTGTGTATCTTTATTAAAGT
TAgactgcacgcatcccctctgatatgttttaaAATTGGGTTACTCTctg
acgggaattttatacacgatacgcatcccctatatcaaaattaGTTCCGG
AGATGCGCACAGCCTGAGTCAAAAGTTAAATCCAAATCTGAATCCACGAT
GCTTTAATTCAATGAATAGTTGACATTTGGTGATAAAAATTCTCGTTTTT
TTCTTCCAACAAATTTCCTTCTTTCTGCATCTGTAATACAAAGATGACTT
GTTTTTCAAgccttttgttaaaatttttttttattctcatGTTGCTTATA
AGTCATATTTTGTTACTATCACCTGTAATTACCTGAGGGGAActtttgcg
tttttttcgggTTCGGCCCTAAACTGCAACATTTAATTcgcgcaaaaatt
agttccctatATTACAAAGAAATTGATTATTTAGGTCAGATTATGAAACA
CCATTAAACCAACCAGCGTTATTGCCCTTGCTCAGTTTCAGTTCCTCGCC
Run BLAST on NCBI

protein sequence of TCONS_00057328-protein

>TCONS_00057328-protein ID=TCONS_00057328-protein|Name=TCONS_00057328-protein|organism=Clytia hemisphaerica|type=polypeptide|length=484bp
FTLKTKYLCVMELKNENDEEESLLSQQDNHDGGNINKINTVIEKLGIGRF
SYWLISRLSTVYFTYGAEMTMLGIIAPFFKCEWNLTGFELGFMTSTNLIG
QGVGFVFWGWMGDKFGRKPVLLTSLFIAMLFSFLTVFSTGYLLFALFRGI
VGIGIASFLFPACLLSEYLPTRIRGIGILASMISYSLGSIFVAWIAKIFL
LQNKWRLFFIVVSAPIVIALAASITLPESIRFLANKSKIDKLRTILQHIA
KAHHKELSNEDIDNIRPLQGQQTDENFRMIFRKDRLPKLLAVIVTLSACL
LNFYGFIIWNTDLQQRYFSSPQNETSTKCHKLTPADYNQNMIVAVSGLLG
TSSSLILVDLIGRKKPVIISLLAVSLLILSLNFRMSFITFSSIMFLGRGI
ISTGLATTNLILNEVFETSVRAKVGGFAQMIGCCITGLAPFLIQYGSHYS
MMAVTVGISVFCVIGAVACMTLKETKGRPLDEKE
Run BLAST on NCBI

transcript from alignment at scaffold_288:257871..259953+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057328 ID=TCONS_00057328|Name=TCONS_00057328|organism=Clytia hemisphaerica|type=transcript|length=2083bp|location=Sequence derived from alignment at scaffold_288:257871..259953+ (Clytia hemisphaerica)
GATTTACTTTAAAGACAAAATATTTGTGTGTTAtggaattgaaaaatgaa
aatgatgaagAGGAAAGTTTGTTGTCACAACAAGACAACCATGATGGAGG
GAATATCAACAAGATAAACACCGTTATCGAGAAACTGGGTATAGGTCGTT
TCTCATACTGGCTCATTTCGCGACTGTCGACCGTTTATTTCACGTATGGT
GCCGAGATGACAATGCTCGGAATCATTGCTCCTTTCTTCAAATGTGAATG
GAATTTGACTGGATTTGAATTGGGTTTTATGACGTCTACAAATCTGATTG
GCCAAGGAGTGGGGTTTGTTTTTTGGGGATGGATGGGTGACAAATTTGGT
CGAAAGCCAGTGCTACTGACAAGTCTCTTCATTGCAATGCTGTTTAGTTT
CCTGACTGTTTTTTCGACCGGTTATTTGCTGTTTGCACTTTTCCGTGGAA
TTGTTGGTATTGGGATCGCTTCATTTCTCTTTCCCGCATGTTTGTTATCC
GAATACTTACCCACCCGCATTCGTGGAATCGGAATTCTTGCAAGCATGAT
CAGTTACAGTCTTGGCTCGATTTTTGTGGCTTGgatagcaaaaatatttt
tgcttcaaaataagTGGCGTCTTTTCTTTATTGTTGTAAGTGCACCGATT
GTGATCGCCCTCGCTGCCTCCATTACTTTACCAGAATCGATCCGATTCTT
AGCgaataaatcaaaaattgataaacttCGAACGATTCTACAACACATTG
CCAAAGCCCACCACAAGGAGTTATCAAACGAGGATATAGATAATATTCGC
CCTTTGCAAGGACAACAAACGGATGAAAACTTTCGGATGATCTTCCGAAA
AGATCGATTGCCAAAGCTGTTAGCAGTCATTGTCACATTGTCTGCATGTT
TGTTGAATTTTTATGGTTTTATTATCTGGAACACAGATCTCCAACAACGT
TACTTCTCATCACATCAAAATGAAACNCATGTTTGTTGAATTTTTATGGT
TTTATTATCTGGAACACAGATCTCCAACAACGTTACTTCTCACCACCTCA
AAATGAAACGTCAACAAAATGCCATAAACTCACTCCAGCTGATTACAATC
AGAATATGATTGTTGCAGTTAGTGGACTCTTGGGGACCTCTTCAAGTCTA
ATACTAGTAGATCTGATCGGCCGTAAAAAGCCAGTTATTATTAGTCTGCT
TGCTGTATCGCTATTGATTTTATCCTTGAACTTTCGAATGTCATTTATAA
CTTTTTCATCCATAATGTTTTTGGGCCGCGGAATCATCTCAACCGGTTTA
GCAACAACCAACCTTATATTGAACGAAGTTTTCGAAACTTCAGTCCGTGC
AAAAGTAGGTGGATTTGCGCAGATGATTGGATGTTGCATCACAGGGTTGG
CTCCCTTCTTGATACAGTATGGATCACACTATAGTATGATGGCTGTCACG
GTTGGCATATCTGTGTTCTGTGTTATAGGGGCCGTCGCCTGTATGACTCT
GAAAGAAACTAAAGGGCGGCCCTTAGATGAAAAAGAGTAGATTTATTATT
CATTTGTCAAGTATTGTGTATCTTTATTAAAGTTAgactgcacgcatccc
ctctgatatgttttaaAATTGGGTTACTCTctgacgggaattttatacac
gatacgcatcccctatatcaaaattaGTTCCGGAGATGCGCACAGCCTGA
GTCAAAAGTTAAATCCAAATCTGAATCCACGATGCTTTAATTCAATGAAT
AGTTGACATTTGGTGATAAAAATTCTCGTTTTTTTCTTCCAACAAATTTC
CTTCTTTCTGCATCTGTAATACAAAGATGACTTGTTTTTCAAgccttttg
ttaaaatttttttttattctcatGTTGCTTATAAGTCATATTTTGTTACT
ATCACCTGTAATTACCTGAGGGGAActtttgcgtttttttcgggTTCGGC
CCTAAACTGCAACATTTAATTcgcgcaaaaattagttccctatATTACAA
AGAAATTGATTATTTAGGTCAGATTATGAAACACCATTAAACCAACCAGC
GTTATTGCCCTTGCTCAGTTTCAGTTCCTCGCC

Coding sequence (CDS) from alignment at scaffold_288:257871..259953+

>TCONS_00057328 ID=TCONS_00057328|Name=TCONS_00057328|organism=Clytia hemisphaerica|type=CDS|length=2910bp|location=Sequence derived from alignment at scaffold_288:257871..259953+ (Clytia hemisphaerica)
TTTACTTTAAAGACAAAATATTTGTGTGTTAtggaattgaaaaatgaaaa
tgatgaagAGGAAAGTTTGTTGTCACAACAAGACAACCATGATGGAGGGA
ATATCAACAAGATAAACACCGTTATCGAGAAACTGGGTATAGGTCGTTTC
TCATACTGGCTCATTTCGCGACTGTCGACCGTTTATTTCACGTATGGTGC
CGAGATGACAATGCTCGGAATCATTGCTCCTTTCTTCAAATGTGAATGGA
ATTTGACTGGATTTGAATTGGGTTTTATGACGTCTACAAATCTGATTGGC
CAAGGAGTGGGGTTTGTTTTTTGGGGATGGATGGGTGACAAATTTGGTCG
AAAGCCAGTGCTACTGACAAGTCTCTTCATTGCAATGCTGTTTAGTTTCC
TGACTGTTTTTTCGACCGGTTATTTGCTGTTTGCACTTTTCCGTGGAATT
GTTGGTATTGGGATCGCTTCATTTCTCTTTCCCGCATGTTTGTTATCCGA
ATACTTACCCACCCGCATTCGTGGAATCGGAATTCTTGCAAGCATGATCA
GTTACAGTCTTGGCTCGATTTTTGTGGCTTGgatagcaaaaatatttttg
cttcaaaataagTGGCGTCTTTTCTTTATTGTTGTAAGTGCACCGATTGT
GATCGCCCTCGCTGCCTCCATTACTTTACCAGAATCGATCCGATTCTTAG
CgaataaatcaaaaattgataaacttCGAACGATTCTACAACACATTGCC
AAAGCCCACCACAAGGAGTTATCAAACGAGGATATAGATAATATTCGCCC
TTTGCAAGGACAACAAACGGATGAAAACTTTCGGATGATCTTCCGAAAAG
ATCGATTGCCAAAGCTGTTAGCAGTCATTGTCACATTGTCTGCATGTTTG
TTGAATTTTTATGGTTTTATTATCTGGAACACAGATCTCCAACAACGTTA
CTTCTCATCACCTCAAAATGAAACGTCAACAAAATGCCATAAACTCACTC
CAGCTGATTACAATCAGAATATGATTGTTGCAGTTAGTGGACTCTTGGGG
ACCTCTTCAAGTCTAATACTAGTAGATCTGATCGGCCGTAAAAAGCCAGT
TATTATTAGTCTGCTTGCTGTATCGCTATTGATTTTATCCTTGAACTTTC
GAATGTCATTTATAACTTTTTCATCCATAATGTTTTTGGGCCGCGGAATC
ATCTCAACCGGTTTAGCAACAACCAACCTTATATTGAACGAAGTTTTCGA
AACTTCAGTCCGTGCAAAAGTAGGTGGATTTGCGCAGATGATTGGATGTT
GCATCACAGGGTTGGCTCCCTTCTTGATACAGTATGGATCACACTATAGT
ATGATGGCTGTCACGGTTGGCATATCTGTGTTCTGTGTTATAGGGGCCGT
CGCCTGTATGACTCTGAAAGAAACTAAAGGGCGGCCCTTAGATGAAAAAG
AGTAGTTTACTTTAAAGACAAAATATTTGTGTGTTAtggaattgaaaaat
gaaaatgatgaagAGGAAAGTTTGTTGTCACAACAAGACAACCATGATGG
AGGGAATATCAACAAGATAAACACCGTTATCGAGAAACTGGGTATAGGTC
GTTTCTCATACTGGCTCATTTCGCGACTGTCGACCGTTTATTTCACGTAT
GGTGCCGAGATGACAATGCTCGGAATCATTGCTCCTTTCTTCAAATGTGA
ATGGAATTTGACTGGATTTGAATTGGGTTTTATGACGTCTACAAATCTGA
TTGGCCAAGGAGTGGGGTTTGTTTTTTGGGGATGGATGGGTGACAAATTT
GGTCGAAAGCCAGTGCTACTGACAAGTCTCTTCATTGCAATGCTGTTTAG
TTTCCTGACTGTTTTTTCGACCGGTTATTTGCTGTTTGCACTTTTCCGTG
GAATTGTTGGTATTGGGATCGCTTCATTTCTCTTTCCCGCATGTTTGTTA
TCCGAATACTTACCCACCCGCATTCGTGGAATCGGAATTCTTGCAAGCAT
GATCAGTTACAGTCTTGGCTCGATTTTTGTGGCTTGgatagcaaaaatat
ttttgcttcaaaataagTGGCGTCTTTTCTTTATTGTTGTAAGTGCACCG
ATTGTGATCGCCCTCGCTGCCTCCATTACTTTACCAGAATCGATCCGATT
CTTAGCgaataaatcaaaaattgataaacttCGAACGATTCTACAACACA
TTGCCAAAGCCCACCACAAGGAGTTATCAAACGAGGATATAGATAATATT
CGCCCTTTGCAAGGACAACAAACGGATGAAAACTTTCGGATGATCTTCCG
AAAAGATCGATTGCCAAAGCTGTTAGCAGTCATTGTCACATTGTCTGCAT
GTTTGTTGAATTTTTATGGTTTTATTATCTGGAACACAGATCTCCAACAA
CGTTACTTCTCATCACCTCAAAATGAAACGTCAACAAAATGCCATAAACT
CACTCCAGCTGATTACAATCAGAATATGATTGTTGCAGTTAGTGGACTCT
TGGGGACCTCTTCAAGTCTAATACTAGTAGATCTGATCGGCCGTAAAAAG
CCAGTTATTATTAGTCTGCTTGCTGTATCGCTATTGATTTTATCCTTGAA
CTTTCGAATGTCATTTATAACTTTTTCATCCATAATGTTTTTGGGCCGCG
GAATCATCTCAACCGGTTTAGCAACAACCAACCTTATATTGAACGAAGTT
TTCGAAACTTCAGTCCGTGCAAAAGTAGGTGGATTTGCGCAGATGATTGG
ATGTTGCATCACAGGGTTGGCTCCCTTCTTGATACAGTATGGATCACACT
ATAGTATGATGGCTGTCACGGTTGGCATATCTGTGTTCTGTGTTATAGGG
GCCGTCGCCTGTATGACTCTGAAAGAAACTAAAGGGCGGCCCTTAGATGA
AAAAGAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036125XLOC_036125Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057328-proteinTCONS_00057328-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057328-exon-scaffold_288-1491911889:257871..258833TCONS_00057328-exon-scaffold_288-1491911889:257871..258833Clytia hemisphaericaexon
TCONS_00057328-exon-scaffold_288-1510915933:257871..258833TCONS_00057328-exon-scaffold_288-1510915933:257871..258833Clytia hemisphaericaexon
TCONS_00057328-exon-scaffold_288-1575043694:257871..258833TCONS_00057328-exon-scaffold_288-1575043694:257871..258833Clytia hemisphaericaexon
TCONS_00057328-exon-scaffold_288-1491911889:258917..259953TCONS_00057328-exon-scaffold_288-1491911889:258917..259953Clytia hemisphaericaexon
TCONS_00057328-exon-scaffold_288-1510915933:258917..259953TCONS_00057328-exon-scaffold_288-1510915933:258917..259953Clytia hemisphaericaexon
TCONS_00057328-exon-scaffold_288-1575043694:258917..259953TCONS_00057328-exon-scaffold_288-1575043694:258917..259953Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:257871..259953 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.7507	11.4877	7.18666	5.81657	2.62096	1.18018	2.84909	4.31375	2.36214	5.24273	3.05561	1.64654	3.00609	1.36248	1.71392	1.74946	5.50161	5.76118	2.31042	1.47457	1.84264	2.04287	10.584	9.27827	0.342673	0.512833	1.28693	0.985001	4.94716	6.83098
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005828MFS_sugar_transport-like
IPR005829Sugar_transporter_CS
IPR020846MFS_dom
Vocabulary: Molecular Function
TermDefinition
GO:0022857transmembrane transporter activity
GO:0005215transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0022857 transmembrane transporter activity
molecular_function GO:0005215 transporter activity
Blast
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BLAST of TCONS_00057328 vs. Swiss-Prot (Human)
Match: SVOPL (Putative transporter SVOPL OS=Homo sapiens GN=SVOPL PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 2.348e-35
Identity = 111/463 (23.97%), Postives = 207/463 (44.71%), Query Frame = 3 
Query:  114 INTVIEKLGIGRFSYWLISRLSTVYFTYGAEMTMLGIIAPFFKCEWNLTGFELGFMTSTNLIGQGVGFVFWGWMGDKFGRKPVLLTSLFIAMLFSFLTVFSTGYLLFALFRGIVGIGIASFLFPACLLSEYLPTRIRGIGILASMISYSLGSIFVAWIAKIFLLQNKWRLFFIVVSAPIVIALAASITLPESIRFLANKSKIDKLRTILQHIAKAHHKELSNEDIDNIRPLQGQQTDENFRMIFRKDRLPKLLAVIVTLSACLLNFYGFIIWNTDLQQRYF---------------SSPQNETSTKCHKLTPADYNQNMIVAVXXXXXXXXXXXXVDLIGRKKPXXXXXXXXXXXXXXXNFRMSFITFSSIMFLGRGIISTGLATTNLILNEVFETSVRAKVGGFAQMIGCCITG--LAPFLIQYGSHYSMMAVTVGISVFCVIGAVACMTLK-ETKGRPLDE 1448
            +   +E +G GRF   L   + +       E+ ++ +++P  +CEW L  +++  +T+    G  V  + +G + D++GR  +LL S      FS LT F+  Y+ F   R +VG G++       + +E+LPT+ RG  +  S + +  GS+ +  +A + +    WR    V S P +I + A   +PES RF  +          L+ +AK +   +    +  + P+  ++    F  +     L   L + V        +YG I+ + +L +R                  S ++++   CH   P+DY   +I  +  +     +++ ++ +GR+  + I++   +L  L LN   S       +F+ R +++    T  +   EV+ T++RA   G       C  G  +APF+ Q     S++      S  CV+ A++  TL  ETKGR L +
Sbjct:   34 VEDAVETIGFGRFHIALFLIMGSTGVVEAMEIMLIAVVSPVIRCEWQLENWQVALVTTMVFFGYMVFSILFGLLADRYGRWKILLISFLWGAYFSLLTSFAPSYIWFVFLRTMVGCGVSGHSQGLIIKTEFLPTKYRGYMLPLSQVFWLAGSLLIIGLASVIIPTIGWRWLIRVASIPGIILIVAFKFIPESARFNVSTGNTRAALATLERVAKMNRSVMPEGKL--VEPVLEKR--GRFADLLDAKYLRTTLQIWVIWLGISFAYYGVILASAELLERDLVCGSKSDSAVVVTGGDSGESQSPCYCHMFAPSDYRTMIISTIGEIALNPLNILGINFLGRRLSLSITMGCTALFFLLLNICTSSAGLIGFLFMLRALVAANFNTVYIYTAEVYPTTMRAL--GMGTSGSLCRIGAMVAPFISQVLMSASILGALCLFSSVCVVCAISAFTLPIETKGRALQQ 490
The following BLAST results are available for this feature:
BLAST of TCONS_00057328 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SVOPL2.348e-3523.97Putative transporter SVOPL OS=Homo sapiens GN=SVOP... [more]
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