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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057327 ID=TCONS_00057327|Name=TCONS_00057327|organism=Clytia hemisphaerica|type=transcript|length=2140bp
ttgatgttttatattttattaaaagCCAGGGTTATTTTTTCAACTTCTCT
AAGGTTTAGTTTTTAGTTTATCATTCGCTGAAAGTAGTATTCGAAAATAT
CATTTATTTACCATGTCCTTTACCACCTTTACTTAATAGTGATTTACTTT
AAAGACAAAATATTTGTGTGTTAtggaattgaaaaatgaaaatgatgaag
AGGAAAGTTTGTTGTCACAACAAGACAACCATGATGGAGGGAATATCAAC
AAGATAAACACCGTTATCGAGAAACTGGGTATAGGTCGTTTCTCATACTG
GCTCATTTCGCGACTGTCGACCGTTTATTTCACGTATGGTGCCGAGATGA
CAATGCTCGGAATCATTGCTCCTTTCTTCAAATGTGAATGGAATTTGACT
GGATTTGAATTGGGTTTTATGACGTCTACAAATCTGATTGGCCAAGGAGT
GGGGTTTGTTTTTTGGGGATGGATGGGTGACAAATTTGGTCGAAAGCCAG
TGCTACTGACAAGTCTCTTCATTGCAATGCTGTTTAGTTTCCTGACTGTT
TTTTCGACCGGTTATTTGCTGTTTGCACTTTTCCGTGGAATTGTTGGTAT
TGGGATCGCTTCATTTCTCTTTCCCGCATGTTTGTTATCCGAATACTTAC
CCACCCGCATTCGTGGAATCGGAATTCTTGCAAGCATGATCAGTTACAGT
CTTGGCTCGATTTTTGTGGCTTGgatagcaaaaatatttttgcttcaaaa
taagTGGCGTCTTTTCTTTATTGTTGTAAGTGCACCGATTGTGATCGCCC
TCGCTGCCTCCATTACTTTACCAGAATCGATCCGATTCTTAGCgaataaa
tcaaaaattgataaacttCGAACGATTCTACAACACATTGCCAAAGCCCA
CCACAAGGAGTTATCAAACGAGGATATAGATAATATTCGCCCTTTGCAAG
GACAACAAACGGATGAAAACTTTCGGATGATCTTCCGAAAAGATCGATTG
CCAAAGCTGTTAGCAGTCATTGTCACATTGTCTGCATGTTTGTTGAATTT
TTATGGTTTTATTATCTGGAACACAGATCTCCAACAACGTTACTTCTCAC
CACCTCAAAATGAAACGTCAACAAAATGCCATAAACTCACTCCAGCTGAT
TACAATCAGAATATGATTGTTGCAGTTAGTGGACTCTTGGGGACCTCTTC
AAGTCTAATACTAGTAGATCTGATCGGCCGTAAAAAGCCAGTTATTATTA
GTCTGCTTGCTGTATCGCTATTGATTTTATCCTTGAACTTTCGAATGTCA
TTTATAACTTTTTCATCCATAATGTTTTTGGGCCGCGGAATCATCTCAAC
CGGTTTAGCAACAACCAACCTTATATTGAACGAAGTTTTCGAAACTTCAG
TCCGTGCAAAAGTAGGTGGATTTGCGCAGATGATTGGATGTTGCATCACA
GGGTTGGCTCCCTTCTTGATACAGTATGGATCACACTATAGTATGATGGC
TGTCACGGTTGGCATATCTGTGTTCTGTGTTATAGGGGCCGTCGCCTGTA
TGACTCTGAAAGAAACTAAAGGGCGGCCCTTAGATGAAAAAGAGTAGATT
TATTATTCATTTGTCAAGTATTGTGTATCTTTATTAAAGTTAgactgcac
gcatcccctctgatatgttttaaAATTGGGTTACTCTctgacgggaattt
tatacacgatacgcatcccctatatcaaaattaGTTCCGGAGATGCGCAC
AGCCTGAGTCAAAAGTTAAATCCAAATCTGAATCCACGATGCTTTAATTC
AATGAATAGTTGACATTTGGTGATAAAAATTCTCGTTTTTTTCTTCCAAC
AAATTTCCTTCTTTCTGCATCTGTAATACAAAGATGACTTGTTTTTCAAg
ccttttgttaaaatttttttttattctcatGTTGCTTATAAGTCATATTT
TGTTACTATCACCTGTAATTACCTGAGGGGAActtttgcgtttttttcgg
gTTCGGCCCTAAACTGCAACATTTAATTcgcgcaaaaattagttccctat
ATTACAAAGAAATTGATTATTTAGGTCAGATTATGAAACACCATTAAACC
AACCAGCGTTATTGCCCTTGCTCAGTTTCAGTTCCTCGCC Run BLAST on NCBI transcript from alignment at scaffold_288:257731..259953+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057327 ID=TCONS_00057327|Name=TCONS_00057327|organism=Clytia hemisphaerica|type=transcript|length=2223bp|location=Sequence derived from alignment at scaffold_288:257731..259953+ (Clytia hemisphaerica)
ttgatgttttatattttattaaaagCCAGGGTTATTTTTTCAACTTCTCT
AAGGTTTAGTTTTTAGTTTATCATTCGCTGAAAGTAGTATTCGAAAATAT
CATTTATTTACCATGTCCTTTACCACCTTTACTTAATAGTGATTTACTTT
AAAGACAAAATATTTGTGTGTTAtggaattgaaaaatgaaaatgatgaag
AGGAAAGTTTGTTGTCACAACAAGACAACCATGATGGAGGGAATATCAAC
AAGATAAACACCGTTATCGAGAAACTGGGTATAGGTCGTTTCTCATACTG
GCTCATTTCGCGACTGTCGACCGTTTATTTCACGTATGGTGCCGAGATGA
CAATGCTCGGAATCATTGCTCCTTTCTTCAAATGTGAATGGAATTTGACT
GGATTTGAATTGGGTTTTATGACGTCTACAAATCTGATTGGCCAAGGAGT
GGGGTTTGTTTTTTGGGGATGGATGGGTGACAAATTTGGTCGAAAGCCAG
TGCTACTGACAAGTCTCTTCATTGCAATGCTGTTTAGTTTCCTGACTGTT
TTTTCGACCGGTTATTTGCTGTTTGCACTTTTCCGTGGAATTGTTGGTAT
TGGGATCGCTTCATTTCTCTTTCCCGCATGTTTGTTATCCGAATACTTAC
CCACCCGCATTCGTGGAATCGGAATTCTTGCAAGCATGATCAGTTACAGT
CTTGGCTCGATTTTTGTGGCTTGgatagcaaaaatatttttgcttcaaaa
taagTGGCGTCTTTTCTTTATTGTTGTAAGTGCACCGATTGTGATCGCCC
TCGCTGCCTCCATTACTTTACCAGAATCGATCCGATTCTTAGCgaataaa
tcaaaaattgataaacttCGAACGATTCTACAACACATTGCCAAAGCCCA
CCACAAGGAGTTATCAAACGAGGATATAGATAATATTCGCCCTTTGCAAG
GACAACAAACGGATGAAAACTTTCGGATGATCTTCCGAAAAGATCGATTG
CCAAAGCTGTTAGCAGTCATTGTCACATTGTCTGCATGTTTGTTGAATTT
TTATGGTTTTATTATCTGGAACACAGATCTCCAACAACGTTACTTCTCAT
CACATCAAAATGAAACNCATGTTTGTTGAATTTTTATGGTTTTATTATCT
GGAACACAGATCTCCAACAACGTTACTTCTCACCACCTCAAAATGAAACG
TCAACAAAATGCCATAAACTCACTCCAGCTGATTACAATCAGAATATGAT
TGTTGCAGTTAGTGGACTCTTGGGGACCTCTTCAAGTCTAATACTAGTAG
ATCTGATCGGCCGTAAAAAGCCAGTTATTATTAGTCTGCTTGCTGTATCG
CTATTGATTTTATCCTTGAACTTTCGAATGTCATTTATAACTTTTTCATC
CATAATGTTTTTGGGCCGCGGAATCATCTCAACCGGTTTAGCAACAACCA
ACCTTATATTGAACGAAGTTTTCGAAACTTCAGTCCGTGCAAAAGTAGGT
GGATTTGCGCAGATGATTGGATGTTGCATCACAGGGTTGGCTCCCTTCTT
GATACAGTATGGATCACACTATAGTATGATGGCTGTCACGGTTGGCATAT
CTGTGTTCTGTGTTATAGGGGCCGTCGCCTGTATGACTCTGAAAGAAACT
AAAGGGCGGCCCTTAGATGAAAAAGAGTAGATTTATTATTCATTTGTCAA
GTATTGTGTATCTTTATTAAAGTTAgactgcacgcatcccctctgatatg
ttttaaAATTGGGTTACTCTctgacgggaattttatacacgatacgcatc
ccctatatcaaaattaGTTCCGGAGATGCGCACAGCCTGAGTCAAAAGTT
AAATCCAAATCTGAATCCACGATGCTTTAATTCAATGAATAGTTGACATT
TGGTGATAAAAATTCTCGTTTTTTTCTTCCAACAAATTTCCTTCTTTCTG
CATCTGTAATACAAAGATGACTTGTTTTTCAAgccttttgttaaaatttt
tttttattctcatGTTGCTTATAAGTCATATTTTGTTACTATCACCTGTA
ATTACCTGAGGGGAActtttgcgtttttttcgggTTCGGCCCTAAACTGC
AACATTTAATTcgcgcaaaaattagttccctatATTACAAAGAAATTGAT
TATTTAGGTCAGATTATGAAACACCATTAAACCAACCAGCGTTATTGCCC
TTGCTCAGTTTCAGTTCCTCGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057327-exon-scaffold_288-1491911889:257731..258765 | TCONS_00057327-exon-scaffold_288-1491911889:257731..258765 | Clytia hemisphaerica | exon |
| TCONS_00057327-exon-scaffold_288-1510915933:257731..258765 | TCONS_00057327-exon-scaffold_288-1510915933:257731..258765 | Clytia hemisphaerica | exon |
| TCONS_00057327-exon-scaffold_288-1575043694:257731..258765 | TCONS_00057327-exon-scaffold_288-1575043694:257731..258765 | Clytia hemisphaerica | exon |
| TCONS_00057327-exon-scaffold_288-1491911889:258849..259953 | TCONS_00057327-exon-scaffold_288-1491911889:258849..259953 | Clytia hemisphaerica | exon |
| TCONS_00057327-exon-scaffold_288-1510915933:258849..259953 | TCONS_00057327-exon-scaffold_288-1510915933:258849..259953 | Clytia hemisphaerica | exon |
| TCONS_00057327-exon-scaffold_288-1575043694:258849..259953 | TCONS_00057327-exon-scaffold_288-1575043694:258849..259953 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_288 | supercontig | scaffold_288:257731..259953 + |
Blast
BLAST of TCONS_00057327 vs. Swiss-Prot (Human)
Match: SVOPL (Putative transporter SVOPL OS=Homo sapiens GN=SVOPL PE=2 SV=2) HSP 1 Score: 138.272 bits (347), Expect = 1.246e-34 Identity = 110/463 (23.76%), Postives = 206/463 (44.49%), Query Frame = 2
Query: 254 INTVIEKLGIGRFSYWLISRLSTVYFTYGAEMTMLGIIAPFFKCEWNLTGFELGFMTSTNLIGQGVGFVFWGWMGDKFGRKPVLLTSLFIAMLFSFLTVFSTGYLLFALFRGIVGIGIASFLFPACLLSEYLPTRIRGIGILASMISYSLGSIFVAWIAKIFLLQNKWRLFFIVVSAPIVIALAASITLPESIRFLANKSKIDKLRTILQHIAKAHHKELSNEDIDNIRPLQGQQTDENFRMIFRKDRLPKLLAVIVTLSACLLNFYGFIIWNTDLQQRYF---------------SPPQNETSTKCHKLTPADYNQNMIVAVXXXXXXXXXXXXVDLIGRKKPXXXXXXXXXXXXXXXNFRMSFITFSSIMFLGRGIISTGLATTNLILNEVFETSVRAKVGGFAQMIGCCITG--LAPFLIQYGSHYSMMAVTVGISVFCVIGAVACMTLK-ETKGRPLDE 1588
+ +E +G GRF L + + E+ ++ +++P +CEW L +++ +T+ G V + +G + D++GR +LL S FS LT F+ Y+ F R +VG G++ + +E+LPT+ RG + S + + GS+ + +A + + WR V S P +I + A +PES RF + L+ +AK + + + + P+ ++ F + L L + V +YG I+ + +L +R ++++ CH P+DY +I + + +++ ++ +GR+ + I++ +L L LN S +F+ R +++ T + EV+ T++RA G C G +APF+ Q S++ S CV+ A++ TL ETKGR L +
Sbjct: 34 VEDAVETIGFGRFHIALFLIMGSTGVVEAMEIMLIAVVSPVIRCEWQLENWQVALVTTMVFFGYMVFSILFGLLADRYGRWKILLISFLWGAYFSLLTSFAPSYIWFVFLRTMVGCGVSGHSQGLIIKTEFLPTKYRGYMLPLSQVFWLAGSLLIIGLASVIIPTIGWRWLIRVASIPGIILIVAFKFIPESARFNVSTGNTRAALATLERVAKMNRSVMPEGKL--VEPVLEKR--GRFADLLDAKYLRTTLQIWVIWLGISFAYYGVILASAELLERDLVCGSKSDSAVVVTGGDSGESQSPCYCHMFAPSDYRTMIISTIGEIALNPLNILGINFLGRRLSLSITMGCTALFFLLLNICTSSAGLIGFLFMLRALVAANFNTVYIYTAEVYPTTMRAL--GMGTSGSLCRIGAMVAPFISQVLMSASILGALCLFSSVCVVCAISAFTLPIETKGRALQQ 490
The following BLAST results are available for this feature:
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