TCONS_00057325 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00057325
Unique Name	TCONS_00057325
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3021

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_288:245898..256490+
coding sequence from alignment at scaffold_288:245898..256490+

transcript sequence

>TCONS_00057325 ID=TCONS_00057325|Name=TCONS_00057325|organism=Clytia hemisphaerica|type=transcript|length=3021bp
tttttatcaaaaataaaacataataaAATGTTTTGCAGCATATATTTtaa
ctaaaacaaaaaatttaaaaagaattgaATTATTATATTTTGTTAATCTT
TATTTTGCAGACCATTTCCAGGAAACCTCCTTTATAATGACGTCATGCTT
TCAAAACTTCGCAAGAGTGAAAGcaagtttttgatgaaaaagggCAGTCT
TTGATTTTTGGCTGGAACTAACAGAAATTTTCAGTCTTTCCTTTTCCTCT
CTATTTTATTTGGCATATTGTAAGAATGGCCGAAGATGGGAATGATTACA
AAGATTCTTTTATGAAGATGGCCAGCTCAGCCTTTACTGCAAGCAAGACT
GGTTGGACAAGAGCAAGACAGtTCACTGAAGAAAGGATTGGCAGTGCTGA
AAAGACAGTCTACGATGCTCAATTTGAGAACCTCAATCTTCGTGCTGATC
GAACCAAAAACATCACTGAGAAACTTCTACGTCAGGGAGAAGCTATGGTT
CAACCCAATCCAAGTGTAAGGATAGAAGAATATATGTATGAGAAATTGGA
TAAGAAAAATCCTCCACGTCCAACCAATGCTTTCATACTGGGCCAAACAA
TGCAAGATGCAAGTCAAGATATCGGCCCCGGTACAGCTTATGGTTCAGCT
CTGTCACAATGTGGAGGTACAATGAAGAAGATGGGAAACGCTGAAAAAGA
TTTTATGCAGAAGTCCATGTCTCACTTCTTACACCCTCTCAAAAGCTTCT
TGgataatgaaatgaaaaccaTTATGaaagaaaaacgagcACTGGAAGTG
AAGCGACTTGATTTAGACGCGTGTAAAAACAAAGTCAAGAAATCTCAAAC
CCCTGAAAAAATGCGACAGGCTGAATCCGAATTACGAGCTGCTCAATCAG
ATTTCGACCGACAACAAGAAATTACGAGGTTGCTTTTAGAAGGCGTCTCC
ACTGCACATGGCAACCATTTAACAGCTTTACATAGTTACGTTGAAGCCTT
AGGAACCTACCATCAACAATGCCAATCGTATANgtgtcaaaatttgaatc
aTTGTAGGAAATCCACAAAGGCGGTTTTTCGACGATAGACCCTCCGAAAA
GCCACCCAGACACACCCTTTAAGGCTTTCACTGATAATGACACTTTGGTA
AGNCTCTTATTTCGTTTTATTTTTTGGATGAATAAAATTCATTAAATGTC
CTTTTTTAAGGTTTTAGGAAAAAAACATGCTAGGGTTAAACAAAGAAAAC
TACTTGCTAGTTCCCTTGTTTTTTGAGGTATCAATATCAACCGCTTGACA
ATCTGCTATACTATTatatacagtggaacctctaattagcggacaccatc
ggggaaaggggttggtgtccgctaattagaagtgtccgccttttagaaac
ttttgatctcggagctccaattttgaaattaggctatcccagggtgtcga
aataccaaattggggtctaaagtacttatctgcagacactaggccataga
agaacaagagaaaggttaATAAAACGCaacaattcaatttttaacaaata
aaagaaaatctagaaatataacaccaaaattgaaaatacaattcgttgaa
tgggtcaagggaaaactggaaatttgtNCCAATTCTTAATTCGTCTTTTT
TTCTGCTTTGCTCAAACTTTTACCCTTTAAAGCGACAAGAAGCTTATGCT
ATATGCTAAGCTAATGTGAATACatgttttcgaaaaatttatgatttttg
aacTTGGGTAAATTAttgtcaaaagttttcaaatacCATTTTGGGTAATT
TACAGACAAGGATAAACGCCCAAGATTTTNcctaaattaattttttcgat
tttggacgtctgtgacccgtttgatattcaatgtccgctaattggagagc
taaaataggggttttggccatttcgtgcgaaaaaatttNTTTACAGACAA
GGATAAACGCCCAAGATTTTAGAACTAAAACATAAAACTAAAACGGTACT
AACCTCAAGTAATATTAACTTGTAATGCTACATCTCTATAGCTAATATGT
AAACTCTACATTTAACAACGGTCATGACTAAAAAAGGTGAAAGTGGTTTC
TACGAAGCCAATCTCTTCTAACTAACTTCAATAATGTTGAAATCGAATAC
AACACGATANtaattgtccgctaatcagaggtgtccgccttttagagtgt
ccgttaattagaggttttactgtactACTATCCTTTAAGTGGTTCTGCTT
AAGTTATTGAGCACAAGCTTCTTGCATCATTGTAAAGTGTATAGGAAAAT
ATTTGCAAGTATGCTAGTCTGCGTATAGTCACNATTTTTTTCATCTCACC
AGGTCGTAAATGTGTACAGTATTGAGGGAATGCATTCGGATTACATGATG
GCACAACGTGGACAGCAAAAAGGAAAAGTACCAATCTCCTATCTCGAACT
tttgtaaattgtaaaaatccattaaaaacataatttaattTATTACAATT
ATACATACCTAAATAGTTTGATTCGATTTTTTGTTCTGTTATGAGTTGAA
TGGTAATATTTTGAAGTAATTAACATTTTTGCAGTAAGGGGTTTGGTCTG
ATCTTGTTGATGCGATGTAGTAAGACCATAGTGAGATTTGGTTTCGTAAT
TTTATTGGACCGGTCCTTTGAAGATTCCTCTTGTTTGAGATTCTGCAAAA
TGTAACACTGTAAAGTCTCATTCTTACAGAACTTGATATTCACATTCAAG
TATGGCAGTGTAGGTTTCCGGGTTTTTAATTAGGAATATTCTTCGAAATT
TTGTTTAGTTaagaaaagttatttttcaGTACTTGAAATAATTTGGTGAT
TTTAATTCATTTTCTTACAAATTACTTTTAATGTTAAATTCTTATGTTAT
AATGAATTGAATATAGCATTTTTATACCGAAAATGTTGATGGTTTATTCT
TCCCGTTTATCTTTTACGACCCTCTTGATTAttttcacacccctgtctca
cagccctggtggaaTTCTTTT

Run BLAST on NCBI

protein sequence of TCONS_00057325-protein

>TCONS_00057325-protein ID=TCONS_00057325-protein|Name=TCONS_00057325-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
MAEDGNDYKDSFMKMASSAFTASKTGWTRARQFTEERIGSAEKTVYDAQF
ENLNLRADRTKNITEKLLRQGEAMVQPNPSVRIEEYMYEKLDKKNPPRPT
NAFILGQTMQDASQDIGPGTAYGSALSQCGGTMKKMGNAEKDFMQKSMSH
FLHPLKSFLDNEMKTIMKEKRALEVKRLDLDACKNKVKKSQTPEKMRQAE
SELRAAQSDFDRQQEITRLLLEGVSTAHGNHLTALHSYVEALGTYHQQCQ
SYXCQNLNHCRKSTKAVFRR

Run BLAST on NCBI

transcript from alignment at scaffold_288:245898..256490+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00057325 ID=TCONS_00057325|Name=TCONS_00057325|organism=Clytia hemisphaerica|type=transcript|length=10593bp|location=Sequence derived from alignment at scaffold_288:245898..256490+ (Clytia hemisphaerica)
tttttatcaaaaataaaacataataaAATGTTTTGCAGCATATATTTtaa
ctaaaacaaaaaatttaaaaagaattgaATTATTATATTTTGTTAATCTT
TATTTTGCAGACCATTTCCAGGAAACCTCCTTTATAATGACGTCATGCTT
TCAAAACTTCGCAAGAGTGAAAGcaagtttttgatgaaaaagggCAGTCT
TTGATTTTTGGCTGGAACTAACAGAAATTTTCAGTCTTTCCTTTTCCTCT
CTATTTTATTTGGCATATTGTAAGAATGGCCGAAGATGGGAATGATTACA
AAGATTCTTTTATGAAGATGGCCAGCTCAGCCTTTACTGCAAGCAAGACT
GGTTGGACAAGAGCAAGACAGGTatgtatgaaaaaaatttaattgtaCCT
GCTGGTGGTTGGGAATTGGGATCCCTCAATTAATTTGTTACTACTCTACT
TTACCTgaatttcataggaaatatATAAGAGAAGAACATGCTGAAGTTTA
GTAGCTTTTTTAACATTTAATTTTTTGCTTTTCAACTAAACAAAAAGGGT
TTGATTTCCATCCATTTTTCCCTTCCTTCCCTTATTTATTATTCCATTCT
CTCATATCCTCCAAAAATGTCTCacagttttttatgaaaacaatGATTAA
TTATAGATGACTGATGGAAAGATAATTTCCTCTTCAGTCCTTAAAACATA
ACACTATTTAGAGAGTTTATCCAACAAAGAAGGTTGATGATTTAGACATA
GCTAGATGTCCAAAGTTTTGAGCAGTTCAACaatatatttgaaaacaaaG
TCAAAGGAAGGCTACTTTAGAGTAAGATGGCTAAAGCAATGCTaaaagct
ggaaaaactggCCTAACAAGGGCTAAGCAGGTAGGTATTTCATCCTGAAT
GCACATTTTTGTATAAGCAACCCAGTTTCTAAAGAGTCCAGCCctgagaa
tagaccttttttcaaagaggcaaccctgttgaataattatgtagtccagc
catacaaacaatgatacagtagtgcataattactgtttcatgcatattgt
aataattatgcatgggtgtatcattgtttttctgctggactacataatta
ttcaacagggtggcctctttgaaaaaaggtctatggccAAAAGATTGAGA
AACTTGGACTTAATAACCTATCCCTTaaacaggctagctctaaagctcta
aaacaacatctaataacatgaaaaccagaatatgattcttcaatgggagt
CAAAACTAGTCCAGATGTTACTAATCGATAAAATcgattatcgattaaaa
tcgataagctaatcgataattaattgattgattAAATATCAATTAAAAAC
AGTAAAGTTTGTAAgtacatcaatttgtcagatctaacaaaattaataac
cgcactgtcatcatttacaataaaacaaacaattttctgtcaagatcctt
ctaaacattccaacaacttccatcaaaatgatatatcacttcaatctgtc
aatcattttctcaagcgaagagtacacaaagcgattctagctttacgata
gtgccgcggatcatcaatgaatggtattcaattatcattatccctttatt
ttcagtcctagaacttttgcaaaaaaaaggaaaaatagttCTATTTTTTA
CTGATCTATTCACATATTGAATtagaaagatcttctatgtggcgtttttt
tgcaaacttcaaaaaactgattttttcccGCTTTTGAGAGACTTTGGCTT
AGTGCTTGCGTGcggcatagggtacaaagtccaatcATGCGtttcttgta
atttttgtatgaagagtctGGAAGAGTTAAGTCTATACTGTTAAACTGAA
CACTAACCGGtaaagcaaacaaacaaacttaaaaaGAGGCATTTTCCTCA
TCATTTGCTATCAAAATGTGTCCCGATGGTATTTGAATACTGAATTTGAG
gtttagacaaaattttggaaattgctAGGCCTTTTTGGATCAATATCCAT
AAGCAACTGCGGAAGGAAAAAAAGAGGTGTTTTTCCtgttcttttttaaa
atttcatcacCCCACATCTTGATGAAAAGAGGGTAattttatataataaa
aaaGGATTACAATTACGATAATGCTTCTTTTCTTTGCGTAACAATTGTCT
TATTTTCAAACTGGTACCTTTAAGTGAGTGCGCTGGACAAGGTCACAACA
ctctaaaaaacagtttttcaaaCGCCTGTCACTATCGAGCTGTCATCTTT
ACGACAGCCATTATGCTTTCAAATGCAGAAAGATAAGGCTTTCTTCTAGT
GCTACCTGTTTTTCCAGTCAGCAAATACATTGAACGTTATGATGAAAATA
AGGATAtataatattaaaatattttcgaGAATTTTGGATATTTCATTTGA
AGCAGGTTACAGAGTGAAAAGTCTCATTATATATACTTTCTAGTGGCAGG
AGATGTTTTTAACTATTATTTACAGCTAATTGTTCGATCTTGCTCTTCTT
GTCAATTCAAGCATATAGCTATGGCAAGAATCTTTTGATCCACACCACAA
TCTTTGTGTGTGAAATCCACAATTCCTGAAGGAAAAATGGATCAGCAGAG
AGATTTCATGTCTAAGATTTAGTTTGAGCCAACTCTCCCATTACCATAAA
TTTGGGGTCCATCAGGAATTCTCAGGAAATTTCAGGTGATTATCCATTGC
ATTTTTGAATTCATCAACTGGAACATTTTGCATTGAACAGCTTTGCACCT
TGTATTGCTTAGGTGCTGTCAcataatttcaaattatttggaCAAATGTA
CTTGGTAACACACATTTGTCCTAGACGTGGGCTGGGTGGTCTTTTACTTT
GAAGCTATCATTGATGTTTACTATTATGCTTTCTAGAATTTTCCAAATGA
TTCGTTATCGCTCTCTTCTTCTCTGAAGTGAGTATATCTTGAGCTGCATG
AGACTTTCCCAATAATTTTGAGGTGCTCCACttatttgctttaaaaaagg
tATCTTTTCAAGTCTTTGAATAAGACCAACAGAACCAGGCCTCCATAGAA
CTGAGCCCTACTCCAGAATTGGGATAACAAGTGATTTATATAGAGTAGGC
AAGTGAAGGTTTGTAATATCCAAGAAATGAGATTTTTTGCTTGATATTAA
TTTGAAGAGGCAATTACTGGACATGGGGACTCCCAAATCTTTAACAAAAc
cttttcttcaattttatctcCTGTTGGTGAAGTGTAATAGGTTTCctttt
tgatttcattattcaaaTCATAACGCAACAATTCAAATTCGGTATCATTT
CATATTGTTAGTGATTGTTCATTGGTATAAGATCTGAAGCTCTTGCTGTA
GTATTTTGACATCTTCAGCATTCTTTATTGATTTGGTGGCGCAAGTGTCA
TCTGCAAAGGAATTTACAATACAGTTTTATGACATTTGCATAGCTATGTC
TTCGATGAGGATCAGGATCCTTTTCTGGAACCCCTAATTACCTCCTGTTG
GTTTGATCTCACAACATTCACCATTACTGTTTGTATAAGCGAAAGATTAT
CATTGATCAGGCTAACTGGGAACTCTCCCTGATGTGTATGAAAAACTACA
ATTATTATTCATCATTTTAGTTCCATATATAAGCTGAATAAGGTGGAATG
GCTGTTCTTTGAAAGAGTCTGAACCTTTGATTTGACAATGAAATAACTTG
GTTAGTATTTAACAAATTTTattaaatgacccctcattttcttttctaag
gtaagggtttttaaaaattgtggGAGAATGTTGCCCTCTCACAGGCTAGT
GGTGACGTCCATCCCATTCTGCCACCAGGCGAAGAAACCTTTTGTACAAC
GCAATACCGTAACTTAGTGTAATGCTGATATGCCTTGTCTAATCCAGTCA
TTGTAACTATCTGGTCTGCAAATTAGTCAGCAATATTTTAAACAGGTTAC
TCCTGGTTACTCAAAAGGTTTTTTAATTAAAAGACCATAATCTCTACGat
ggaattagacaaggtattTCGGCATTACACAAAGTTACGTTACCATTTTG
AATCCAAAGTTAGTGAGGAAAAGCATTACATAATGACTCAAAGACATCCA
GTGATGCGGCGTGATGTACATCAATTCTAGTTTGGCCAGACATTTGGTTA
GTCACACTAGTATCCctttgaaatgcatgtcaaagATCAATATACTGCAG
AAGTATTTCATTATTTACTTAACTTTTGAACAAGTAAATAATAAagggat
ttatgaaaaaatgaactGGTACTTTTCAAGCAAATTaacatttcaaaaac
tttaaaaatttcctACAATTTGATCTGTAGACCAATGTCAACCTTAAAAA
CCATTATTGCAAATAATGAATTTTTAGTTGGCTGGTAATTTTGGGAGCGT
AGCTAGAATAATTCGAGCAGGGGATTTAGAGGGGGGGGAGTTCTAAAGCC
ACAAGCAGCCAGGCTCTAGCCCTTTAACCCAAAATTGgctattttaaaaa
aattttaaaaaggaactaagaaatttaatttttagatGATTAAAAAATAG
GAAAGAAGCCTTGATAAGCCTATAGCCTAGGTAAATTTTAaccaaacaaa
gtgaaaaagtaAGCTTCAGAATGACCAGTAATTACCGGTTGCTGGCTGCT
ATTTGCAGCACTTAAAACTGATTTGAAGAACAACTTCACAGGAAAAAATA
TCATCCAGGGAAGCTCAAGAAACCTGCTTATCTCTGAGCAGATTGTCATA
TTCCATGTATGGCACACATTCACATGGTTTTCTAAGAGAATTTGCCAATG
TCTTCGGACCGCTTCAATCTCTTTCAATTTCATCTAGTTTTAGTATGAAT
ATTAAAAAAGAGTACAGTGTTtgactaaagcaaaacaatggcACAAAATC
ATAAACGGAAACATAAGAACCAAGTTacatttactttgattttaaggcaa
aaaaaaacaacaacaaggcTTTGAATGTTTTGGTCTAAAAGGTTTTGTGA
CAACTGGAACCTAAAAATGACCTTAGGTTCGTGGCCAACTTCCTAACTAG
GgttaaattttattcaaatctaACTGGGGGCTTTATTCTGATAAAGTGCA
TTTTAAAAACTAACCCATCATTTTAGGAGCCAGATCCATATAAATAAATg
cataaaataataaaataatgacACAATATCCTGCAATATCTGTCAAAATT
TTCCTATACAAAAGGTCATGCCCTAATTTTTTGAGCCAAATATGAAAAGT
TAGGTCTGAACAATATTGGTCATTTCCTGACCTTGTGTACACTGCTTGTA
ATTCTGTGTAATTGATTATGTTATTTTGTTTCATATTCTGAAAAAATGGT
TCAGGAATTAGGAACTTGATAAATCTCCTGTTTTTAGGGCCATGCCTGAA
TGTTGTTTGCTTTTTCATgttccaaaaaaaaatgaaaaattgaccaatta
aCAAGTTTaccttcaaaaattgtttttcagtTCACTGAAGAAAGGATTGG
CAGTGCTGAAAAGACAGTCTACGATGCTCAATTTGAGAACCTCAATCTTC
GTGCTGATCGAACCAAAAACATCACTGAGAAACTTCTACGTCAGGGAGAA
GCTATGGTTCAACCCAATCCAAGTAAGAGTTTTAGTTCACTTtgagtttg
aaaaaagaaaataagttcTTCGcacaattttaaatttcattttcacagaT
TACATAACTCAAATTATTTGTTATCAATAgcaattgggctattccagaaa
aatttgTATCCCATATGCTGATGAGGTCTTTTTTAGAAAAGGTGACCTCc
ctggattttgaaaaatgaaaattggattttttcatatttttgaccACCCT
GGATCACCACCCTGGATCTTTTTAATAAATTCCAGATCCCCCTAGACATC
ATACCTCCCGAACAATTCAAAGAGgatacagactatttctggaatagccc
aatgatACTAATGGGTTTTTTTCATAGCTTTCAAAAAAGGTTTAGAGCGT
GGAAGTAAACCTGCGAATGCCGAAATGCAAAGAAATCTTTGTTTAAAATC
TCGACTTTATTTTAGGTGTAAGGATAGAAGAATATATGTATGAGAAATTG
GATAAGAAAAATCCTCCACGTCCAACCAATGCTTTCATACTGGGCCAAAC
AATGCAAGATGCAAGTCAAGATATCGGCCCCGGTACAGCTTATGGTAAGA
CGGTTTGATATGATACCTTATTGAATAGGATGCTTTTACGTCCTAtattt
ttcgcgaattttagccgTTTACTTGAACTGAATCTCTATTCAGGACTAGG
AATCTTAAGGCCTAAAATAATGGAAATTAGTTAAAAAGGGGCCGATTTGC
GAAATTTGGTTCACgcgaaaatttaaaatcttcaatttGCGAGAAAGTCC
GCGCAAAAATGTAACGTCCACGCAACGCATTTGAATGCCACGGTATATGG
AATAGATCATGATGTTTTTGATTTAACagtttaaatataaaaaaagatcC
CCTTTTCTTCCGTTCACACAGGTTCACAAACTTCTTGAATTTGCTTGAAC
TCTCCCTCAGACTCGCTGTATATTCATGCTTAAGTAATTTCgacattgtt
tttattttcgaatATTTCAGGTTCAGCTCTGTCACAATGTGGAGGTACAA
TGAAGAAGATGGGAAACGCTGAAAAAGATTTTATGCAGAAGTCCATGTCT
CACTTCTTACACCCTCTCAAAAGCTTCTTGgataatgaaatgaaaaccaT
TATGGTGAGATATCTTTTCTTTTCCcattaattttttgatttggtaTCAG
TCTTAAATAATTTGCTATTATCTATGAATTCGTTACAGTGTAAATTTGTA
TTGCATTTTTGATGTCAGTTGTCTTTTATTGACTCTTTTGTTTGCCACAG
TGTTGACCTTATACGTCACAAAAAACGTGTGTATCGTCAGAAGGGTTCCT
TTAAAATGTGACATCTTgattttttaactgttttacaGGATGTCCACGTT
TTGAATAACCTTTAGTTTCTAACGAGcctttagaccatgttcagacgtta
cggttccatttcgctccgaaacgaaacggttccgaaacaagtgtgaacgt
caaaattcaaaacgccaaaaaagaagacgttacacagTAAGAAAATATCG
CGAAACGGTtttgctccacttttttcatcggaatgGAACTGCTCCGTTTN
GAAACgttaaaaaagaagacgttacacagTAAGAAAATATcgcgaaacgg
tttcgctccacttttttaaTCGCGGAAcagaactgctccgttttcttgct
ccgttttcttgctccgaaacgttccgaaactaatatgaacactctcgatc
cgtaacgaaaatcacaccgaagcgaaacggaaccgtaacgtctgaataTG
ATCTTAGTTTCTAACGAACCTTGATTGCCTTTTTATACGAATTCTCCCct
tttacagaaagaaaaacgagcACTGGAAGTGAAGCGACTTGATTTAGACG
CGTGTAAAAACAAAGTCAAGAAATCTCAAACCCCTGAAAAAATGCGACAG
GTAAGAAATAAacttaatatttttaaagacttcTCTCCAGCTAAACTGAT
TCTCAAAAAGTACTctgcttcttcatttttcattcttcCATTCTTCGTTT
CAACCTTCCTAAGGCCAACTTTTTGggtaaaattgataaatttgacGGAA
NCTAAGGTAAACCTCTCCAAACAACCTTCCTATGGCCAACTTTTTGggta
aaattgataaattagaCGGAAATCTTTTATGTCATGTGGATGTAATAGTA
ATATGGATAGACAAGTTCGCAGACCTATCTGTGAGCACACGGGCCTTCTC
TATGAACCGCACTTGATAtcgtttacatttttttttaaaaagtagaGTAT
TTTTCTTGGGCTCCATCGGACTTTCAACTTGAAATTCTTATCCTTGATTT
TTTCGTTCATTTCGTTGGCTTCTTGGCACAGTTCCTTAATTATTTATCAT
TCATTTTAGGTCAGATCTTCTATCATTCGGTATTGCTGAAAACCGTTTCG
TTCGGTGATGGGTTTCAGCAAAGTTTTTTTTGTCTTCCTCATTTGCTCAT
TTACTTAACTCTTTTTTTTCAGGCTGAATCCGAATTACGAGCTGCTCAAT
CAGATTTCGACCGACAACAAGAAATTACGAGGTTGCTTTTAGAAGGCGTC
TCCACTGCACATGTGagtatcattttcactgaaaccAAAATTCATTAGTA
GATCATCTGAGTTACGGAGGGAAAAGAAGACCCGAAGGCACTAAGACAAG
CGGGCAGAAATGTGCGCCAATAGAATTGATTTCTGAAATTGCACCTTTAC
TTTACATTGCAGTTGAGAATTTGGTGGGGTTCATATCTTCCCTATTCTAA
AATGGAAGTTGTGAGTGAAGAAAAATTATGCGATTCGCATTATTTTATTC
TTCCTCTTTAGAGAATATTTCACTCAGCAAATCTTTTCATAATCGAAAAA
TGTTTGCTCACTTCTTTTGCTTGTTGTTTAGGGCAACCATTTAACAGCTT
TACATAGTTACGTTGAAGCCTTAGGAACCTACCATCAACAATGCCAATCG
TATANgtgtcaaaatttgaatcaTTGTAGGAAATCCACAAAGGCGGTTTT
TCGACGATAGACCCTCCGAAAAGCCACCCAGACACACCCTTTAAGGCTTT
CACTGATAATGACACTTTGGTAAGNCTCTTATTTCGTTTTATTTTTTGGA
TGAATAAAATTCATTAAATGTCCTTTTTTAAGGTTTTAGGAAAAAAACAT
GCTAGGGTTAAACAAAGAAAACTACTTGCTAGTTCCCTTGTTTTTTGAGG
TATCAATATCAACCGCTTGACAATCTGCTATACTATTatatacagtggaa
cctctaattagcggacaccatcggggaaaggggttggtgtccgctaatta
gaagtgtccgccttttagaaacttttgatctcggagctccaattttgaaa
ttaggctatcccagggtgtcgaaataccaaattggggtctaaagtactta
tctgcagacactaggccatagaagaacaagagaaaggttaATAAAACGCa
acaattcaatttttaacaaataaaagaaaatctagaaatataacaccaaa
attgaaaatacaattcgttgaatgggtcaagggaaaactggaaatttgtN
CCAATTCTTAATTCGTCTTTTTTTCTGCTTTGCTCAAACTTTTACCCTTT
AAAGCGACAAGAAGCTTATGCTATATGCTAAGCTAATGTGAATACatgtt
ttcgaaaaatttatgatttttgaacTTGGGTAAATTAttgtcaaaagttt
tcaaatacCATTTTGGGTAATTTACAGACAAGGATAAACGCCCAAGATTT
TNcctaaattaattttttcgattttggacgtctgtgacccgtttgatatt
caatgtccgctaattggagagctaaaataggggttttggccatttcgtgc
gaaaaaatttNTTTACAGACAAGGATAAACGCCCAAGATTTTAGAACTAA
AACATAAAACTAAAACGGTACTAACCTCAAGTAATATTAACTTGTAATGC
TACATCTCTATAGCTAATATGTAAACTCTACATTTAACAACGGTCATGAC
TAAAAAAGGTGAAAGTGGTTTCTACGAAGCCAATCTCTTCTAACTAACTT
CAATAATGTTGAAATCGAATACAACACGATANtaattgtccgctaatcag
aggtgtccgccttttagagtgtccgttaattagaggttttactgtactAC
TATCCTTTAAGTGGTTCTGCTTAAGTTATTGAGCACAAGCTTCTTGCATC
ATTGTAAAGTGTATAGGAAAATATTTGCAAGTATGCTAGTCTGCGTATAG
TCACNATTTTTTTCATCTCACCAGGTCGTAAATGTGTACAGTATTGAGGG
AATGCATTCGGATTACATGATGGCACAACGTGGACAGCAAAAAGGAAAAG
TACCAATCTCCTATCTCGAACTtttgtaaattgtaaaaatccattaaaaa
cataatttaattTATTACAATTATACATACCTAAATAGTTTGATTCGATT
TTTTGTTCTGTTATGAGTTGAATGGTAATATTTTGAAGTAATTAACATTT
TTGCAGTAAGGGGTTTGGTCTGATCTTGTTGATGCGATGTAGTAAGACCA
TAGTGAGATTTGGTTTCGTAATTTTATTGGACCGGTCCTTTGAAGATTCC
TCTTGTTTGAGATTCTGCAAAATGTAACACTGTAAAGTCTCATTCTTACA
GAACTTGATATTCACATTCAAGTATGGCAGTGTAGGTTTCCGGGTTTTTA
ATTAGGAATATTCTTCGAAATTTTGTTTAGTTaagaaaagttatttttca
GTACTTGAAATAATTTGGTGATTTTAATTCATTTTCTTACAAATTACTTT
TAATGTTAAATTCTTATGTTATAATGAATTGAATATAGCATTTTTATACC
GAAAATGTTGATGGTTTATTCTTCCCGTTTATCTTTTACGACCCTCTTGA
TTAttttcacacccctgtctcacagccctggtggaaTTCTTTT

Coding sequence (CDS) from alignment at scaffold_288:245898..256490+

>TCONS_00057325 ID=TCONS_00057325|Name=TCONS_00057325|organism=Clytia hemisphaerica|type=CDS|length=5691bp|location=Sequence derived from alignment at scaffold_288:245898..256490+ (Clytia hemisphaerica)
ATGGCCGAAGATGGGAATGATTACAAAGATTCTTTTATGAAGATGGCCAG
CTCAGCCTTTACTGCAAGCAAGACTGGTTGGACAAGAGCAAGACAGtTCA
CTGAAGAAAGGATTGGCAGTGCTGAAAAGACAGTCTACGATGCTCAATTT
GAGAACCTCAATCTTCGTGCTGATCGAACCAAAAACATCACTGAGAAACT
TCTACGTCAGGGAGAAGCTATGGTTCAACCCAATCCAAGTGTAAGGATAG
AAGAATATATGTATGAGAAATTGGATAAGAAAAATCCTCCACGTCCAACC
AATGCTTTCATACTGGGCCAAACAATGCAAGATGCAAGTCAAGATATCGG
CCCCGGTACAGCTTATGGTTCAGCTCTGTCACAATGTGGAGGTACAATGA
AGAAGATGGGAAACGCTGAAAAAGATTTTATGCAGAAGTCCATGTCTCAC
TTCTTACACCCTCTCAAAAGCTTCTTGgataatgaaatgaaaaccaTTAT
GaaagaaaaacgagcACTGGAAGTGAAGCGACTTGATTTAGACGCGTGTA
AAAACAAAGTCAAGAAATCTCAAACCCCTGAAAAAATGCGACAGGCTGAA
TCCGAATTACGAGCTGCTCAATCAGATTTCGACCGACAACAAGAAATTAC
GAGGTTGCTTTTAGAAGGCGTCTCCACTGCACATGGCAACCATTTAACAG
CTTTACATAGTTACGTTGAAGCCTTAGGAACCTACCATCAACAATGCCAA
TCGTATANgtgtcaaaatttgaatcaTTGTAGGAAATCCACAAAGGCGGT
TTTTCGACGATAGATGGCCGAAGATGGGAATGATTACAAAGATTCTTTTA
TGAAGATGGCCAGCTCAGCCTTTACTGCAAGCAAGACTGGTTGGACAAGA
GCAAGACAGtTCACTGAAGAAAGGATTGGCAGTGCTGAAAAGACAGTCTA
CGATGCTCAATTTGAGAACCTCAATCTTCGTGCTGATCGAACCAAAAACA
TCACTGAGAAACTTCTACGTCAGGGAGAAGCTATGGTTCAACCCAATCCA
AGTGTAAGGATAGAAGAATATATGTATGAGAAATTGGATAAGAAAAATCC
TCCACGTCCAACCAATGCTTTCATACTGGGCCAAACAATGCAAGATGCAA
GTCAAGATATCGGCCCCGGTACAGCTTATGGTTCAGCTCTGTCACAATGT
GGAGGTACAATGAAGAAGATGGGAAACGCTGAAAAAGATTTTATGCAGAA
GTCCATGTCTCACTTCTTACACCCTCTCAAAAGCTTCTTGgataatgaaa
tgaaaaccaTTATGaaagaaaaacgagcACTGGAAGTGAAGCGACTTGAT
TTAGACGCGTGTAAAAACAAAGTCAAGAAATCTCAAACCCCTGAAAAAAT
GCGACAGGCTGAATCCGAATTACGAGCTGCTCAATCAGATTTCGACCGAC
AACAAGAAATTACGAGGTTGCTTTTAGAAGGCGTCTCCACTGCACATGGC
AACCATTTAACAGCTTTACATAGTTACGTTGAAGCCTTAGGAACCTACCA
TCAACAATGCCAATCGTATANgtgtcaaaatttgaatcaTTGTAGGAAAT
CCACAAAGGCGGTTTTTCGACGATAGATGGCCGAAGATGGGAATGATTAC
AAAGATTCTTTTATGAAGATGGCCAGCTCAGCCTTTACTGCAAGCAAGAC
TGGTTGGACAAGAGCAAGACAGtTCACTGAAGAAAGGATTGGCAGTGCTG
AAAAGACAGTCTACGATGCTCAATTTGAGAACCTCAATCTTCGTGCTGAT
CGAACCAAAAACATCACTGAGAAACTTCTACGTCAGGGAGAAGCTATGGT
TCAACCCAATCCAAGTGTAAGGATAGAAGAATATATGTATGAGAAATTGG
ATAAGAAAAATCCTCCACGTCCAACCAATGCTTTCATACTGGGCCAAACA
ATGCAAGATGCAAGTCAAGATATCGGCCCCGGTACAGCTTATGGTTCAGC
TCTGTCACAATGTGGAGGTACAATGAAGAAGATGGGAAACGCTGAAAAAG
ATTTTATGCAGAAGTCCATGTCTCACTTCTTACACCCTCTCAAAAGCTTC
TTGgataatgaaatgaaaaccaTTATGaaagaaaaacgagcACTGGAAGT
GAAGCGACTTGATTTAGACGCGTGTAAAAACAAAGTCAAGAAATCTCAAA
CCCCTGAAAAAATGCGACAGGCTGAATCCGAATTACGAGCTGCTCAATCA
GATTTCGACCGACAACAAGAAATTACGAGGTTGCTTTTAGAAGGCGTCTC
CACTGCACATGGCAACCATTTAACAGCTTTACATAGTTACGTTGAAGCCT
TAGGAACCTACCATCAACAATGCCAATCGTATANgtgtcaaaatttgaat
caTTGTAGGAAATCCACAAAGGCGGTTTTTCGACGATAGATGGCCGAAGA
TGGGAATGATTACAAAGATTCTTTTATGAAGATGGCCAGCTCAGCCTTTA
CTGCAAGCAAGACTGGTTGGACAAGAGCAAGACAGtTCACTGAAGAAAGG
ATTGGCAGTGCTGAAAAGACAGTCTACGATGCTCAATTTGAGAACCTCAA
TCTTCGTGCTGATCGAACCAAAAACATCACTGAGAAACTTCTACGTCAGG
GAGAAGCTATGGTTCAACCCAATCCAAGTGTAAGGATAGAAGAATATATG
TATGAGAAATTGGATAAGAAAAATCCTCCACGTCCAACCAATGCTTTCAT
ACTGGGCCAAACAATGCAAGATGCAAGTCAAGATATCGGCCCCGGTACAG
CTTATGGTTCAGCTCTGTCACAATGTGGAGGTACAATGAAGAAGATGGGA
AACGCTGAAAAAGATTTTATGCAGAAGTCCATGTCTCACTTCTTACACCC
TCTCAAAAGCTTCTTGgataatgaaatgaaaaccaTTATGaaagaaaaac
gagcACTGGAAGTGAAGCGACTTGATTTAGACGCGTGTAAAAACAAAGTC
AAGAAATCTCAAACCCCTGAAAAAATGCGACAGGCTGAATCCGAATTACG
AGCTGCTCAATCAGATTTCGACCGACAACAAGAAATTACGAGGTTGCTTT
TAGAAGGCGTCTCCACTGCACATGGCAACCATTTAACAGCTTTACATAGT
TACGTTGAAGCCTTAGGAACCTACCATCAACAATGCCAATCGTATANgtg
tcaaaatttgaatcaTTGTAGGAAATCCACAAAGGCGGTTTTTCGACGAT
AGATGGCCGAAGATGGGAATGATTACAAAGATTCTTTTATGAAGATGGCC
AGCTCAGCCTTTACTGCAAGCAAGACTGGTTGGACAAGAGCAAGACAGtT
CACTGAAGAAAGGATTGGCAGTGCTGAAAAGACAGTCTACGATGCTCAAT
TTGAGAACCTCAATCTTCGTGCTGATCGAACCAAAAACATCACTGAGAAA
CTTCTACGTCAGGGAGAAGCTATGGTTCAACCCAATCCAAGTGTAAGGAT
AGAAGAATATATGTATGAGAAATTGGATAAGAAAAATCCTCCACGTCCAA
CCAATGCTTTCATACTGGGCCAAACAATGCAAGATGCAAGTCAAGATATC
GGCCCCGGTACAGCTTATGGTTCAGCTCTGTCACAATGTGGAGGTACAAT
GAAGAAGATGGGAAACGCTGAAAAAGATTTTATGCAGAAGTCCATGTCTC
ACTTCTTACACCCTCTCAAAAGCTTCTTGgataatgaaatgaaaaccaTT
ATGaaagaaaaacgagcACTGGAAGTGAAGCGACTTGATTTAGACGCGTG
TAAAAACAAAGTCAAGAAATCTCAAACCCCTGAAAAAATGCGACAGGCTG
AATCCGAATTACGAGCTGCTCAATCAGATTTCGACCGACAACAAGAAATT
ACGAGGTTGCTTTTAGAAGGCGTCTCCACTGCACATGGCAACCATTTAAC
AGCTTTACATAGTTACGTTGAAGCCTTAGGAACCTACCATCAACAATGCC
AATCGTATANgtgtcaaaatttgaatcaTTGTAGGAAATCCACAAAGGCG
GTTTTTCGACGATAGATGGCCGAAGATGGGAATGATTACAAAGATTCTTT
TATGAAGATGGCCAGCTCAGCCTTTACTGCAAGCAAGACTGGTTGGACAA
GAGCAAGACAGtTCACTGAAGAAAGGATTGGCAGTGCTGAAAAGACAGTC
TACGATGCTCAATTTGAGAACCTCAATCTTCGTGCTGATCGAACCAAAAA
CATCACTGAGAAACTTCTACGTCAGGGAGAAGCTATGGTTCAACCCAATC
CAAGTGTAAGGATAGAAGAATATATGTATGAGAAATTGGATAAGAAAAAT
CCTCCACGTCCAACCAATGCTTTCATACTGGGCCAAACAATGCAAGATGC
AAGTCAAGATATCGGCCCCGGTACAGCTTATGGTTCAGCTCTGTCACAAT
GTGGAGGTACAATGAAGAAGATGGGAAACGCTGAAAAAGATTTTATGCAG
AAGTCCATGTCTCACTTCTTACACCCTCTCAAAAGCTTCTTGgataatga
aatgaaaaccaTTATGaaagaaaaacgagcACTGGAAGTGAAGCGACTTG
ATTTAGACGCGTGTAAAAACAAAGTCAAGAAATCTCAAACCCCTGAAAAA
ATGCGACAGGCTGAATCCGAATTACGAGCTGCTCAATCAGATTTCGACCG
ACAACAAGAAATTACGAGGTTGCTTTTAGAAGGCGTCTCCACTGCACATG
GCAACCATTTAACAGCTTTACATAGTTACGTTGAAGCCTTAGGAACCTAC
CATCAACAATGCCAATCGTATANgtgtcaaaatttgaatcaTTGTAGGAA
ATCCACAAAGGCGGTTTTTCGACGATAGATGGCCGAAGATGGGAATGATT
ACAAAGATTCTTTTATGAAGATGGCCAGCTCAGCCTTTACTGCAAGCAAG
ACTGGTTGGACAAGAGCAAGACAGtTCACTGAAGAAAGGATTGGCAGTGC
TGAAAAGACAGTCTACGATGCTCAATTTGAGAACCTCAATCTTCGTGCTG
ATCGAACCAAAAACATCACTGAGAAACTTCTACGTCAGGGAGAAGCTATG
GTTCAACCCAATCCAAGTGTAAGGATAGAAGAATATATGTATGAGAAATT
GGATAAGAAAAATCCTCCACGTCCAACCAATGCTTTCATACTGGGCCAAA
CAATGCAAGATGCAAGTCAAGATATCGGCCCCGGTACAGCTTATGGTTCA
GCTCTGTCACAATGTGGAGGTACAATGAAGAAGATGGGAAACGCTGAAAA
AGATTTTATGCAGAAGTCCATGTCTCACTTCTTACACCCTCTCAAAAGCT
TCTTGgataatgaaatgaaaaccaTTATGaaagaaaaacgagcACTGGAA
GTGAAGCGACTTGATTTAGACGCGTGTAAAAACAAAGTCAAGAAATCTCA
AACCCCTGAAAAAATGCGACAGGCTGAATCCGAATTACGAGCTGCTCAAT
CAGATTTCGACCGACAACAAGAAATTACGAGGTTGCTTTTAGAAGGCGTC
TCCACTGCACATGGCAACCATTTAACAGCTTTACATAGTTACGTTGAAGC
CTTAGGAACCTACCATCAACAATGCCAATCGTATANgtgtcaaaatttga
atcaTTGTAGGAAATCCACAAAGGCGGTTTTTCGACGATAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_036124	XLOC_036124	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00057325-protein	TCONS_00057325-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_288	supercontig	scaffold_288:245898..256490 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
121.472	121.176	122.57	115.66	15.5866	13.051	33.0719	33.6593	45.9609	45.998	47.2979	37.289	38.2961	34.3208	51.3686	46.4037	45.7928	48.0373	39.2121	42.5361	37.1656	36.328	55.5462	56.0872	43.7492	43.2674	69.9885	67.6551	88.1537	88.9641

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR004148	BAR_dom
IPR027267	AH/BAR-dom

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005515	protein binding

Blast

[Close]

BLAST of TCONS_00057325 vs. Swiss-Prot (Human)
Match: SHLB1 (Endophilin-B1 OS=Homo sapiens GN=SH3GLB1 PE=1 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 4.199e-74
Identity = 120/228 (52.63%), Postives = 165/228 (72.37%), Query Frame = 3

Query:  348 TGWTRARQFTEERIGSAEKTVYDAQFENLNLRADRTKNITEKLLRQGEAMVQPNPSVRIEEYMYEKLDKKNPPRPTNAFILGQTMQDASQDIGPGTAYGSALSQCGGTMKKMGNAEKDFMQKSMSHFLHPLKSFLDNEMKTIMKEKRALEVKRLDLDACKNKVKKSQTPEKMRQAESELRAAQSDFDRQQEITRLLLEGVSTAHGNHLTALHSYVEALGTYHQQCQSY 1031
            T  +RA QFTEE++G AEKT  DA  ENL  +A+ TK  TEK+++Q E ++QPNP+ RIEE++YEKLD+K P R  N  +LGQ M DA  + GPGTAYG+AL +CG T K++G A+++ +Q S  +FL PL++F++ + KTI KE++ L+ KRLDLDA K ++KK++  E    +E ELR  QS+FDRQ EITRLLLEG+S+ H +HL  L+ +VEA  TY+ QC  Y
Sbjct:   17 TFLSRAVQFTEEKLGQAEKTELDAHLENLLSKAECTKIWTEKIMKQTEVLLQPNPNARIEEFVYEKLDRKAPSRINNPELLGQYMIDAGTEFGPGTAYGNALIKCGETQKRIGTADRELIQTSALNFLTPLRNFIEGDYKTIAKERKLLQNKRLDLDAAKTRLKKAKAAETRNSSEQELRITQSEFDRQAEITRLLLEGISSTHAHHLRCLNDFVEAQMTYYAQCYQY 244

The following BLAST results are available for this feature:

BLAST of TCONS_00057325 vs. Swiss-Prot (Human)

BLAST of TCONS_00057325 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SHLB1	4.199e-74	52.63	Endophilin-B1 OS=Homo sapiens GN=SH3GLB1 PE=1 SV=1	[more]

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TCONS_00057325 (transcript) - C. hemisphaerica