TCONS_00057324 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057324
Unique NameTCONS_00057324
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length428

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057324 ID=TCONS_00057324|Name=TCONS_00057324|organism=Clytia hemisphaerica|type=transcript|length=428bp
CTTCGGTTTAATATCAAAATGTCTGGTCGAAAGTTTGTTCTAGGGGAAAA
TAATACAATGAAACGTAATACCCtaataaaatatttacaattacACGATA
ATAATAAGATTGCTTTGATTATACATAATAATAAAATTGCATGGTGAAAT
AAATGATAAAAGCGCTGATTTAATGTCACATGTTCGACGCTTACGAAGGG
ACCCTTTTATACTTCTGGTACTGGTTTATAATGTTGCATGGAATTCTTTG
TGACAAGTTGAGTATTCGATATAAAAGTACAGCAAACATCAGATTGTAAT
GAGCAGTTGTATGGATAATATGAAAAAATGCTTCGTGGTCGTTCAAGGGA
GTGATGAAAGGTCTCGTTTCGGAGCGACACCTGTTTTCTTTTCAGGTCCA
GCCATCGCTTTTTCGAACTTCAAAATTC
Run BLAST on NCBI

transcript from alignment at scaffold_288:238020..238505+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057324 ID=TCONS_00057324|Name=TCONS_00057324|organism=Clytia hemisphaerica|type=transcript|length=486bp|location=Sequence derived from alignment at scaffold_288:238020..238505+ (Clytia hemisphaerica)
CTTCGGTTTAATATCAAAATGTCTGGTCGAAAGTTTGTTCTAGGGGAAAA
TAATACAATGAAACGTAATACCCtaataaaatatttacaattacACGATA
ATAATAAGATTGCTTTGATTATACATAATAATAAAATTGCATGGTGAAAT
AAATGATAAAAGCGCTGATTTAATGTCACATGTTCGACGCTTACGAAGGG
ACCCTTTTATACTTCTGGTACTGGTTTATAATGTTGCATGGAATTCTTTG
TGACAAGTTGAGTATTCGATATAAAAGTACAGCAAACATCAGATTGTAAT
GAGCAGTTGTATGGATAATATGAAAAAATGCTTCGTGGTCGTTCAAGGGA
GTGATGAAAGGTCTCGTTTCGGAGCGACACCTGTTNTGCTTCGTGGTAGT
TCAAGGGAGTGATGAAAGGTCTCGTTTCGGAGCGACACCTGTTTTCTTTT
CAGGTCCAGCCATCGCTTTTTCGAACTTCAAAATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036123XLOC_036123Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057324-exon-scaffold_288-1491911889:238020..238379TCONS_00057324-exon-scaffold_288-1491911889:238020..238379Clytia hemisphaericaexon
TCONS_00057324-exon-scaffold_288-1510915933:238020..238379TCONS_00057324-exon-scaffold_288-1510915933:238020..238379Clytia hemisphaericaexon
TCONS_00057324-exon-scaffold_288-1575043694:238020..238379TCONS_00057324-exon-scaffold_288-1575043694:238020..238379Clytia hemisphaericaexon
TCONS_00057324-exon-scaffold_288-1491911889:238438..238505TCONS_00057324-exon-scaffold_288-1491911889:238438..238505Clytia hemisphaericaexon
TCONS_00057324-exon-scaffold_288-1510915933:238438..238505TCONS_00057324-exon-scaffold_288-1510915933:238438..238505Clytia hemisphaericaexon
TCONS_00057324-exon-scaffold_288-1575043694:238438..238505TCONS_00057324-exon-scaffold_288-1575043694:238438..238505Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:238020..238505 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.12087	0	0	0	0	0	0.73964	2.29584	0	1.03075	1.50264	5.68183	0	0	4.67149	0	4.78811	2.20764	0	0.537064	0.561836	0	0	0	1.30507	0	0.553284	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057324 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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