TCONS_00057323 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057323
Unique NameTCONS_00057323
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3284

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057323 ID=TCONS_00057323|Name=TCONS_00057323|organism=Clytia hemisphaerica|type=transcript|length=3284bp
gaacttttaaataATCAACAACGGTACACTAAAAAAATAAGTCTAGTTCT
TTAAAATTCTTCCAAAACTTGTTTGTAAATATATGCGATTCATATATAAG
ACATTCACATAAAAACACTTTATTATAAATTTCCATTTGCAAAAATGGAC
GGTTAAGGTTCCGATGAAATGTGTCGTCTACGATACGTCACCAACGCGAA
CATGAAGATGAAGAGGACAAGAATGACCAGAGTGACCACATTCAATACCA
TCAATGTTGATACGTCATCTTTTAAAGATTTCTCAGAATCATCTCTCTGT
CCATCGTTCTCCCCTACGCCAGGTGTTAAAGTGGTTGTGGTTGTGCCACT
AGAAGTTGTAGAGTTGTTGTCTCCTTGGTAATCGTCAGTTCGTGTTGGAT
GATAATTATCCGTAGTATGGTTCGAAAGTGTTTCAGTGTTATATGTACGA
TCGTGTTCTTCAGTAGTAACAAGGAAAGGTCGTCCGGTTGTATCGTGTTC
CCTTTTTTCACACAATGTACCGGTATATGTAAAAAAACATGAACATCTCG
CTCCATTTTTATCTTGCACACATTTACCAAAATTCCGACACGGGTCTTGC
GAACAAACATCACACCCAATCTTTCCGCCAATGATAAACATAGAAGCTCG
ATCGCTCAACTTTTGGAGGTCGTTTGTAGCATTAGAGCGACAATCGCCGA
TAACGGTAGCTTCTCTCGTGACTTGTTTGATTGCAGATAAAACGTTACAA
CTGCACCGAAAATCATTATTTGATAAATCCAACACACCGCTTATTTTCTC
AGTATTATATCTCAAGAAATTTTTCGGTAAGTCTGTAAGTTTGGTATTTC
GTAAGTTCAGATTACGAAATTTGTTGAATCCGTTGAACGAGTTTTCGGTT
ACTTCCTTAAGCGAGTTTCCCGATAAATCAATAGTTACCAAATCTATCAA
GCTCGGGAAAAAGGTAGGCACCTTAGTAAAACTATTCGTCCCGAGATTTA
TCGTTTTTAGTTTATTGGAGAGTTCCAAACGCAATGAGTCATTAAGTTTG
TTTCCTTTGAGATTCAGATAGCGGAGTTGAGAAAAAGCACTGAACGCATC
GACATCGATATGCTGAAtggaattatgtgaaaaatccaAACTTTGTCCTT
GGCGTAAATGATATGGACCCGTTGGACTGATTTCAATAACACTAGAGAAT
CTCCTGATCGTAGTTAAACGATTATGACTGCAGTTCAAATTTCCAAGCCA
AACATTGGGATTGATCTTAATGTCGGTTATATCTTCTATCAAATTATGGG
AAAGATCAACAGTTTTAAAATCCTTCTTGATTTCAATGGTTTGGATTTGG
TTGTAAGATAAATTGACGTACCCTTCAGTGTTTATAAAGTCAAGTACAAC
TTTGGAAAGGTTATTGAAACTTAAATCAAGGTACTTTGAATTGAAGGAGG
GTAAAGTTTTTTGACACGAGTTACTGATATTCACAATATTTGCATTGGAT
AAATAAAATCTGGACACTAACCAAGGCGAAGCGCAGTTGCTGGAGATGTC
AACTTCTCGCAGGTACGACAAACGACGAAGATCAAGTTCAAAATGAACCA
AATCAGATCCTATATTTTNGCCGATAACGGTAGCTTCTCTCGTGACTTGT
TTGATTGCAGATAAAACGTTACAACTGCACCGAAAATCATTATTTGATAA
ATCCAACACACCGCTTATTTTCTCAGTATTATATCTCAAGAAATTTTTCG
GTAAGTCTGTAAGGTTGGTATTTCGTAAGTTCAGATTACGAAGTTTGTTG
AATCCGTTGAACGAGTTTTCGGTTACTTCCTTAAGCGAGTTTCCCGATAA
ATCAATAGTTACCAAATCTATCAAGCTCGGGAAAAAGGTAGGCACCTTAG
TAAAACTATTCGTCCCGAGATTTATCGTTTTCAGTTTATTGGAGAGTTCC
AAACGCAATGAGTCATTAAGTTTGTTTCCTTTGAGATTCAGATAGCGGAG
TTGAGAAAAAGCACTGAACGCATCGAGATCGATATGCTGAAtggaattat
gtgaaaaatccaAACTTTGTCCTTGGCGTAAATGATACGGACCCGTTGGA
CTGATTTCAATGACATTAGAGAATCTCCTGATCGTAGTTAGATGATTATG
ACTGCAGTTCAAATTTNGGCAAATATTTGAAGTCAGTTGTGTTTAAGCTT
TTGAAGTTATTGAAGCTGAGATCCAAAATACTTAAGTGTTcactatttcc
aaaaaaatgtcgtGGCAGTCGATTTATCAAGTTATTGTTTAGACGCAGTT
CCTTTAATTTCTTCTTCGGTAACATTGCAAGTGCATCTCTTGGCAAGGCT
GATGTCAAACGTATTCCATTATTTGATAGATCCAATTTCTCAAGACTTTT
AAAACCTTGAAGCATTTCTTCATTGATGGTGGAGAGCTGATTAAAGCTGA
GATCTAGATCTGCTAACAGCCTTGCGTTCTTGGTGATTGGGCCagtaagt
tttttcaaattgttgtCCTTTAATAAGATGAGCTGTAATAGATTTGGAGT
ATTCTGGATGGCTTCGAATCCAATAGTTTCCAGGTTCTTGTTACCTTTGA
ATTCAAGTTTCTTAAGTCTATAAAATCCATCCATAAAAAATGTAGGGAGC
GTTGTCAGGTTGGTGTAAAGAACTTCCAGCTGTTCTAGTTGTTTTAATTC
ACTTAATACCTTCATATTGATGTTGGTCAAAGTGTTATCGCCATGAATAA
CCAATTTTCTTAACAAATGAAATCCATTCAGTGAAGCAGTGTCCAAGGAT
CCTGATTGGAGTCGAAGCTCGAAAAGCGCTGGTAACGGTTCTTTGAATAT
CTTTCTTTCTGTGATCGGGTTACTGGTCAAATCCAAATATCTCAATTTGG
TAAACTTTGAGATGAGTTGATCGCTTACAGTGGTAATATAGTTGTTTGCC
AAGTTGAGCGATACTAGATTATGGATCGGAATGTTTGAAGGAATTTGCGT
CATATTCCGATGACTGCAATCGCATATTTGACCATAAGTGCACTCTCCAC
GATCAATATACCCATTGGTGGGCTGTTTTAGAGTAAAAGGTTTATAGCAA
TATTCACCATATTCACACGAACAATTTCCGATGTTAGATTCAGAGCTGGA
GACTGGTGCTACAATGAGTAGCATTACCAGAGGTATGAGATCCAACTTCA
TCAACTTGACCGTCATTTCAATTTCTGTTGAAAGAGCTCTCAGACTATAA
ATAAACTGACAGTCCGATAGCACCTAGCTTAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_288:186016..190315+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057323 ID=TCONS_00057323|Name=TCONS_00057323|organism=Clytia hemisphaerica|type=transcript|length=4300bp|location=Sequence derived from alignment at scaffold_288:186016..190315+ (Clytia hemisphaerica)
gaacttttaaataATCAACAACGGTACACTAAAAAAATAAGTCTAGTTCT
TTAAAATTCTTCCAAAACTTGTTTGTAAATATATGCGATTCATATATAAG
ACATTCACATAAAAACACTTTATTATAAATTTCCATTTGCAAAAATGGAC
GGTTAAGGTTCCGATGAAATGTGTCGTCTACGATACGTCACCAACGCGAA
CATGAAGATGAAGAGGACAAAAATGACCAGAGTGACCACATTCAATACCA
TCAATGTTGTTACGTCATCTTTTAAAGAGTTCTCAATATCATCTCTCTGC
CCCTCGTTCTCCCCTCTGCCAGGTGTTAAAGTGGTTGTGGGTGCGCCGCC
AGAAGTTGTAGAGTTGTTGTCTCCTTGGTAATCGTCAGTTCGTGTTGGAT
GATAATTATCCGTAGTATGGTTCGAAAGTGTTTCAGTGTTATATGTACGA
TCGTGTTCTTCAGTAGTAACAAGGAAAGGTCGTCCGGTTGTATCGTGTTC
CCTTTTTTCACACAATGTACCGGTATATGTAAAAAAACATGAACATCTCG
CTCCATTTTTATCTTGCACACATTTACCAAAATTCCGACACGGGTCTTGC
GAACAAACATCACACCCAATCTTTCCGCCAATGATAAACATAGAAGCTCG
ATCGCTCAACTTTTGGAGGTCGTTTGTAGCATTAGAGCGACAATCGCCGA
TAACGGTAGCTTCTCTCGTGACTTGTTTGATTGCAGATAAAACGTTACAA
CTGCACCGAAAATCATTATTTGATAAATCCAACACACCGCTTATTTTCTC
AGTATTATATCTCAAGAAATTTTTCGGTAAGTCTGTAAGTTTGGTATTTC
GTAAGTTCAGATTACGAAATTTGTTGAATCCGTTGAACGAGTTTTCGGTT
ACTTCCTTAAGCGAGTTTCCCGATAAATCAATAGTTACCAAATCTATCAA
GCTCGGGAAAANAGAAAAACACCTTTGTAATATTTTCCACAACTTCAAAA
TTATTGGGTATataatgaacttttaaataATCAACAACGGTACACTAAAA
AATAAGTCTAGTTGTTTAAAATTCTTCCAAAACTTGTTTGTAAATATATG
CGATTCATATATAAGACATTAACATAAAAAACACTTTATTATAAATTTCC
ATTTGCAGAAATGGAGGGTTTAGGTTCCGATGAAATCTGTCGTCTACGAT
ACGTCACGAAAGTGAACATGAAGATGAAGAGGACAAGAATGACCAGAGTG
ACCACATTCAATACCATCAATGTTGATACGTCATCTTTTAAAGATTTCTC
AGAATCATCTCTCTGTCCATCGTTCTCCCCTACGCCAGGTGTTAAAGTGG
TTGTGGTTGTGCCACTAGAAGTTGTAGAGTTGTTGTCTCCTTGGTAATCG
TCAGTTCGTGTTGGATGATAATTATCCGTAGTATGGTTCGAAAGTGTTTC
AGTGTTATATGTACGATCGTGTTCTTCAGTAGTAACAAGGAAAGGTCGTC
CGGTTGTATCGTGTTCCCTTTTTTCACACAATGTACCGGTATATGTAAAA
AAACATGAACATCTCGCTCCATTTTTATCTTGCACACATTTACCAAAATT
CCGACACGGGTCTTGCGAACAAACATCACACCCAATCTTTCCGCCAATGA
TAAACATAGAAGCTCGATCGCTCAACTTTTGGAGGTCGTTTGTAGCATTA
GAGCGACAATCGCCGATAACGGTAGCTTCTCTCGTGACTTGTTTGATTGC
AGATAAAACGTTACAACTGCACCGAAAATCATTATTTGATAAATCCAACA
CACCGCTTATTTTCTCAGTATTATATCTCAAGAAATTTTTCGGTAAGTCT
GTAAGTTTGGTATTTCGTAAGTTCAGATTACGAAATTTGTTGAATCCGTT
GAACGAGTTTTCGGTTACTTCCTTAAGCGAGTTTCCCGATAAATCAATAG
TTACCAAATCTATCAAGCTCGGGAAAAAGGTAGGCACCTTAGTAAAACTA
TTCGTCCCGAGATTTATCGTTTTTAGTTTATTGGAGAGTTCCAAACGCAA
TGAGTCATTAAGTTTGTTTCCTTTGAGATTCAGATAGCGGAGTTGAGAAA
AAGCACTGAACGCATCGACATCGATATGCTGAAtggaattatgtgaaaaa
tccaAACTTTGTCCTTGGCGTAAATGATATGGACCCGTTGGACTGATTTC
AATAACACTAGAGAATCTCCTGATCGTAGTTAAACGATTATGACTGCAGT
TCAAATTTCCAAGCCAAACATTGGGATTGATCTTAATGTCGGTTATATCT
TCTATCAAATTATGGGAAAGATCAACAGTTTTAAAATCCTTCTTGATTTC
AATGGTTTGGATTTGGTTGTAAGATAAATTGACGTACCCTTCAGTGTTTA
TAAAGTCAAGTACAACTTTGGAAAGGTTATTGAAACTTAAATCAAGGTAC
TTTGAATTGAAGGAGGGTAAAGTTTTTTGACACGAGTTACTGATATTCAC
AATATTTGCATTGGATAAATAAAATCTGGACACTAACCAAGGCGAAGCGC
AGTTGCTGGAGATGTCAACTTCTCGCAGGTACGACAAACGACGAAGATCA
AGTTCAAAATGAACCAAATCAGATCCTATATTTTNGCCGATAACGGTAGC
TTCTCTCGTGACTTGTTTGATTGCAGATAAAACGTTACAACTGCACCGAA
AATCATTATTTGATAAATCCAACACACCGCTTATTTTCTCAGTATTATAT
CTCAAGAAATTTTTCGGTAAGTCTGTAAGGTTGGTATTTCGTAAGTTCAG
ATTACGAAGTTTGTTGAATCCGTTGAACGAGTTTTCGGTTACTTCCTTAA
GCGAGTTTCCCGATAAATCAATAGTTACCAAATCTATCAAGCTCGGGAAA
AAGGTAGGCACCTTAGTAAAACTATTCGTCCCGAGATTTATCGTTTTCAG
TTTATTGGAGAGTTCCAAACGCAATGAGTCATTAAGTTTGTTTCCTTTGA
GATTCAGATAGCGGAGTTGAGAAAAAGCACTGAACGCATCGAGATCGATA
TGCTGAAtggaattatgtgaaaaatccaAACTTTGTCCTTGGCGTAAATG
ATACGGACCCGTTGGACTGATTTCAATGACATTAGAGAATCTCCTGATCG
TAGTTAGATGATTATGACTGCAGTTCAAATTTNGGCAAATATTTGAAGTC
AGTTGTGTTTAAGCTTTTGAAGTTATTGAAGCTGAGATCCAAAATACTTA
AGTGTTcactatttccaaaaaaatgtcgtGGCAGTCGATTTATCAAGTTA
TTGTTTAGACGCAGTTCCTTTAATTTCTTCTTCGGTAACATTGCAAGTGC
ATCTCTTGGCAAGGCTGATGTCAAACGTATTCCATTATTTGATAGATCCA
ATTTCTCAAGACTTTTAAAACCTTGAAGCATTTCTTCATTGATGGTGGAG
AGCTGATTAAAGCTGAGATCTAGATCTGCTAACAGCCTTGCGTTCTTGGT
GATTGGGCCagtaagttttttcaaattgttgtCCTTTAATAAGATGAGCT
GTAATAGATTTGGAGTATTCTGGATGGCTTCGAATCCAATAGTTTCCAGG
TTCTTGTTACCTTTGAATTCAAGTTTCTTAAGTCTATAAAATCCATCCAT
AAAAAATGTAGGGAGCGTTGTCAGGTTGGTGTAAAGAACTTCCAGCTGTT
CTAGTTGTTTTAATTCACTTAATACCTTCATATTGATGTTGGTCAAAGTG
TTATCGCCATGAATAACCAATTTTCTTAACAAATGAAATCCATTCAGTGA
AGCAGTGTCCAAGGATCCTGATTGGAGTCGAAGCTCGAAAAGCGCTGGTA
ACGGTTCTTTGAATATCTTTCTTTCTGTGATCGGGTTACTGGTCAAATCC
AAATATCTCAATTTGGTAAACTTTGAGATGAGTTGATCGCTTACAGTGGT
AATATAGTTGTTTGCCAAGTTGAGCGATACTAGATTATGGATCGGAATGT
TTGAAGGAATTTGCGTCATATTCCGATGACTGCAATCGCATATTTGACCA
TAAGTGCACTCTCCACGATCAATATACCCATTGGTGGGCTGTTTTAGAGT
AAAAGGTTTATAGCAATATTCACCATATTCACACGAACAATTTCCGATGT
TAGATTCAGAGCTGGAGACTGGTGCTACAATGAGTAGCATTACCAGAGGT
ATGAGATCCAACTTCATCAACTTGACCGTCATTTCAATTTCTGTTGAAAG
AGCTCTCAGACTATAAATAAACTGACAGTCCGATAGCACCTAGCTTAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036122XLOC_036122Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057323-exon-scaffold_288-1491911889:186016..186216TCONS_00057323-exon-scaffold_288-1491911889:186016..186216Clytia hemisphaericaexon
TCONS_00057323-exon-scaffold_288-1510915933:186016..186216TCONS_00057323-exon-scaffold_288-1510915933:186016..186216Clytia hemisphaericaexon
TCONS_00057323-exon-scaffold_288-1575043694:186016..186216TCONS_00057323-exon-scaffold_288-1575043694:186016..186216Clytia hemisphaericaexon
TCONS_00057323-exon-scaffold_288-1491911889:187233..190315TCONS_00057323-exon-scaffold_288-1491911889:187233..190315Clytia hemisphaericaexon
TCONS_00057323-exon-scaffold_288-1510915933:187233..190315TCONS_00057323-exon-scaffold_288-1510915933:187233..190315Clytia hemisphaericaexon
TCONS_00057323-exon-scaffold_288-1575043694:187233..190315TCONS_00057323-exon-scaffold_288-1575043694:187233..190315Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:186016..190315 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0302151	0.0522533	0.063902	2.53016	1.62876	0.327812	0.294466	0.493257	5.12897	1.08708	1.81378e-07	10.5097	2.79833	1.6301	8.91734	1.98709	7.37418	1.70168	2.73417	0	0.0163232	0	0.0240535	0.582202	0.066332	1.11863	1.68798e-06	0.0384171	0.0130469
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675L_dom-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057323 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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