TCONS_00057317 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057317
Unique NameTCONS_00057317
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1541

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057317 ID=TCONS_00057317|Name=TCONS_00057317|organism=Clytia hemisphaerica|type=transcript|length=1541bp
TGTTGATACACTCTTAGAGTGTATTCATGAAGGGTCAAATTAGTTGGTTA
GTTCGTACTTATTAAAGTTAAGAATGGCTAGATTGATGAAAAGATCTATT
TTGAGGAATCTTCAAAGTGCAATATATGGCCAGAAGCAGCCTTTAAGCAG
CGCATCGTATTTTCTGGCGAAAAGTATTTCTAGAATCGAAGATGATAAAA
GCACAAGGCTGTTAAAAGTACAATGGGAAAACGGGAAAGAAAACCTATAC
CCATATCTCTTTTTGAGAGATCACTGCCAATGTCCCGAATGTTTTCATCC
GTTTACAAAATCCCGGAAACTGGATACAGTCGCTGCTGTAGATTTAGGAA
TCACAATCGATGACTTCGCTTATGACGCAAGCGATGACGTTGTCGAGGTC
ACGTGGCCTGATGGACACCAAAGTCGATTCACGGCAAAATGGCTGAAATC
CCGATTTCTATCTCGGAAAGGAGAACAAATCAATGATCGAACTGGTTTAG
ATTCAGTTCAACGAGTttcttggacttcaatggaaaTCCGTGAAAATACT
CCGTTTGTTGATTTTCATGAAATCGAAAGCGATGAAAAAGCTTTGAAGGG
ACACTTGGAAAATCTTTTAAGATATGGCTTAAGTATTGTCAGAAATGCAC
CTTTGGAGTTATCAGTGTTACAAAAGATGGCAGATTTAATGTGCTTATCC
ATTGTGAGACACACGAATTATGGACCGTTTTTCACTGTTGAATCCAAACC
ATCACCTAGCAACTTGGCATACACAGGAAGTGCGCTACCAATGCACACAG
ATCTTCCTTTTTACGACTATCAACCAGGCGTTCAACTTCTACATTGCATT
CGCCAATCAAGTGGAGGTGAATCAGACGGTGCAAGTCTTCTTGTGGACGG
AATGAAAGTCGTTGAAGACCTCAAAGAAAATTCTCCTGAAGATTATCATT
TGCTGACAACGACAAATTTCAGATTCAATGACGAGGGAACGGACTTCTAC
GGTGAATTTGATCTGCGATTTGAGAGACCTATTATTGAactCGACAAGAA
CGGAAAATTCGTCCACATAGCTTACAACAATCCAGTCCGAGATTTTATCA
ACGCTCCGGCAGAAAATATACAGCGAATATATGAAGCGTATTACAAACTT
TCAGCCATGCTCCGAGACAAACACTACCAATTTCAATATAAAATGGCGCC
AGGGGATATGTTAGTATTCGATAATAATAGAGTCTTGCACGGGAGAATGG
CTTTTGATGCGACATCGTCAGATCGTAAGCTACACGGCTCTTTTTTGGAT
TGGGACGATATTCGGTCAACGTGGAGAGTGCTACATAACCGATAAGGATA
AACAAATTGATTTCCGGATTGGCAGTGTTGAAGATATATGAGGAAAAAAT
GATCATTCATTACATACCCATTACCGGACTATTAAATTCAGGATATACTT
ATACTTGTCAACAGTATttctaagaaattttaaaagtcttttgttcattg
gagtctctataactcgaacctctacaactcgaacatctatt
Run BLAST on NCBI

protein sequence of TCONS_00057317-protein

>TCONS_00057317-protein ID=TCONS_00057317-protein|Name=TCONS_00057317-protein|organism=Clytia hemisphaerica|type=polypeptide|length=423bp
MARLMKRSILRNLQSAIYGQKQPLSSASYFLAKSISRIEDDKSTRLLKVQ
WENGKENLYPYLFLRDHCQCPECFHPFTKSRKLDTVAAVDLGITIDDFAY
DASDDVVEVTWPDGHQSRFTAKWLKSRFLSRKGEQINDRTGLDSVQRVSW
TSMEIRENTPFVDFHEIESDEKALKGHLENLLRYGLSIVRNAPLELSVLQ
KMADLMCLSIVRHTNYGPFFTVESKPSPSNLAYTGSALPMHTDLPFYDYQ
PGVQLLHCIRQSSGGESDGASLLVDGMKVVEDLKENSPEDYHLLTTTNFR
FNDEGTDFYGEFDLRFERPIIELDKNGKFVHIAYNNPVRDFINAPAENIQ
RIYEAYYKLSAMLRDKHYQFQYKMAPGDMLVFDNNRVLHGRMAFDATSSD
RKLHGSFLDWDDIRSTWRVLHNR
Run BLAST on NCBI

transcript from alignment at scaffold_288:66784..77452+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057317 ID=TCONS_00057317|Name=TCONS_00057317|organism=Clytia hemisphaerica|type=transcript|length=10669bp|location=Sequence derived from alignment at scaffold_288:66784..77452+ (Clytia hemisphaerica)
TGTTGATACACTCTTAGAGTGTATTCATGAAGGGTCAAATTAGTTGGTTA
GTTCGTACTTATTAAAGTTAAGAATGGCTAGATTGATGAAAAGATCTATT
TTGAGGAATCTTCAAAGTGCAATATATGGCCAGAAGCAGCCTTTAAGCAG
CGCATCGTATTTTCTGGCGAAAAGTATTTCTAGAATCGAAGATGATAAAA
GCACAAGGCTGTTAAAAGTACAATGGGAAAACGGGAAAGAAAACCTATAC
CCATATCTCTTTTTGAGAGATCACTGCCAATGTCCCGAATGTTTTCATCC
GTTTACAAAATCCCGGAAACTGGATACAGTCGCTGCTGTAGATTTAGGAA
TCACAATCGATGACTTCGCTTATGACGCAAGCGATGACGTTGTCGAGGTC
ACGTGGCCTGATGGACACAAAAGTCGATTCACGGCAGNATGAAGCAAGCG
ATGACGTTGTCGAGGTCACGTGGCCTGATGGACACCAAAGTCGATTCACG
GCAAAATGGCTGAAATCCCGATTTCTATCTCGGAAAGGAGAACAAATCAA
TGATCGAACTGGTTTAGATTCAGTTCAACGAGTttcttggacttcaatgg
aaaTCCGTGAAAATACTCCGTTTGTTGATTTTCATGAAATCGAAAGCGAT
GAAAAAGCTTTGAAGGGACACTTGGAAAATCTTTTAAGATATGGCTTAAG
TATTGTCAGAAATGCACCTTTGGAGTTATCAGTGTTACAAAAGATGGCAG
ATTTAATGTGCTTATCCATTGTGAGACACACGAATTATGGGTAAGTGGAA
ATAAAATGGTTTTATCAATTATACAAAACGGCAAACTACTCACATACAAG
CAACATAAGCAATAGAGAGCGTCTAGATACCTCCATTCCAATAGAATACT
TTATAAAAAGATAGATATCGAGTTCAGAAATTACGTCATAATTTTCCGAG
TCTTTAGGtgaggaaaatatagaaaactctgaacgagaaaaatatatccT
ATATTGTACGAGaaaagtgtgataactggtttattgtcaacttgaaaaat
atcaacaaacttttccCTCTCCATTCAGGCCAATCTcgcacttatttcta
ccatatgtgtagatatgtaaacatccgtaaatctaccatatgtgtagata
ttagaatccgtaaatctaccatatgcgNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAACGATGACAAACCTTA
ACCCTAACTAtccaaagaacgacatatttcaaaccctaaccctaactatc
aaagaacgaaacGACATATTTTGCCCtccacaaccccgaccaaaaagtga
ctgtaccacccctagcgATTCATTCCTTTTTGTTCATCACGCTATTTAAC
TACATGTGGTGTTAACATTACGCATGCGCATAACTCTTTATGTTAAGCAT
TTACcgtatctacacatatggtagatttacgatatctacacatatggtag
attgacggattctaatatctacacatatggtagatttacggatgtttaca
tatctacacatatggtagaaataagtgtGAGAATGTGTTGCTCCATTTGT
GTCtctttctttgtgttttttttttacttcctgTATTTTGGTGAAATCGA
CATCAAAACAGTCGACTTTTCGTAAATGATTcgaatggtcattaaaatat
caaaacaatttttaaaaacttttctgaGTATTGAGAgtagaaaagaaaac
attcctTAGAATAAATTTTGGGATAAGATACCAAGGAATTATAAGAGACA
CTGGATATATGactcataaaacggtggagagcgaccattgtattttcttt
gttttagaaaacaattgGTGTTCCAGctatgtccgcaaaggacaactgtc
atggcggctcaaatgtatctgattttgaaaaatgtttattaNtgggaatt
ggatgagtgatttttaataagaaatgcaataaaaatgcttcgaaaaatca
tttaatgagggaaggagagtgaacaataatatcattactgcggacttgta
tatccagtgtataataaatccttgaagATACAAAAGTAAgtacaaaatat
gatctctcgcttaccagacTTCTTTTTTGAACGCAGTCTTGTATCAGctt
gtatttgtacggtacaatatgaaatacagcatttattagcctgggaatcc
aagcgttaaacttttttcacagtctagtttatgatattttggctgctggt
ttaacgcttggcgcaggtaactcgcctgcagggagatttttccctgcaat
gcaggttcggcctgattggccagctctcggcgtattacttagcagtactt
tcgcgcgcattttgataatttcgatgcgcacgcataatttatggaaaaag
ctgactctgcagaaaaaaggaaaacaaatgaaaatgaaaacatatagatt
catttaaaaacaaaatggctgttggctggatgtctaaatacatgtggctg
atgttttgatgtggtttttagtagttttgaaagtctttagagcNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNctgtgtcagactaatctacctgcacc
aagctctataattttagaactttgtgaggtgaggtattttttgttttttc
taaaattatgagcttggattcccaggctaagcatttatgtacgcgttttt
aACCAAttagattgctcatatttttcatgctgataaTAAACGcgtttaaa
cgccccctcgaataaacactccttctaaaattcaaaaaaattgatttagg
TGTCATCCACGAAAATAAGTTCAACAGCGAAATTATTCCCATTAAAGTAA
GCGCTTAATGGGTAAAGCTCTCTGTTTTTATTTCACAGACCGTTTTTCAC
TGTTGAATCCAAACCATCACCTAGCAACTTGGCATACACAGGAAGTGCGC
TACCAATGCACACAGATCTTCCTTTTTACGACTATCAACCAGGCGTAAGt
aacaagaaaaacattttctacTCAATCTAAAATGTATCTCTGCAATATCC
TCTCAGAATTACATCACTATTCCAAcatctgattggttgtaagtgacgta
ttaGGTAAAAAAGCCCAGAAAGGTTTACATAATGTCGTAATCACATAACA
tacttttttcaaagggataatcagatggtctgagatttTAAGGGTACCTg
ttccccgggggggggcactcgatctgaaaacgaccatacgttcggcccaa
aatttggcttctaaaatcggacccttacagtgcagtgaatttccatgaaa
aatcgtacccttacagtgcactttttcaaaatttctcgcccgtgcCGTAA
GGGCGAAAACTTTTGCaactttccaagaaaatgtggaatttttcctccaa
aattggccttttatcacaatttcctacccttacagtgcagttcagtgcag
ttttgtaatttcctacccttacagtgcactagctgaactatgaaaaacct
accNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNaatacccgaagttttcctcttcgt
cggtcaaatcgctataaaatcgcttaaatttcctcattcgccgtaccaga
tataaaaagcttccgtcgtgcctgaaTATTAATAAAGTTTTGGGTAAAGA
AAAATACAGTTCGTTATTTCCTGTAGGTTCAGTACTGAAATATCTCAATT
ATGGCAATACCATCTGATAATCTCTTTAGTGTTATCAGAATTTAAAGAAA
TTCAATGGAGATTTACTTTCATTATATATTTCGATTTCGGAGGGGTTAAA
GTGGCTTCAGGGTCAATTCAGGCCTTTTTAGAGTTTTTGGATCTTGTGAT
CTTAAGACTTATGTTAAAACTAAGACTTAAACTATCATATTCTAGGAGTA
AGttagaaaactttgaaattttgcagggAATTCCCTTTTTATCTCAAATA
CCATGACAATGCTTGTAGGTTCAACTTCTACATTGCATTCGCCAATCAAG
TGGATCTGAATCAGACGGTGCAAGTCTTCTTGTGGACGCCATGAAAGTCG
TTGAAGACCTCAAAGGAAATTCTCCTGAAGATTATCATTTGCTGACGACA
ACAAATTTCAGATTCAATGACGAGGGGACTGACCTCTACGGTGAATTCGA
TCTTCAATTTGAGAGACCTACTATTGGGTAAGCTTtaattgttgattttt
ttttaattaacacATCAAAGAATAATAACGGGTAAAAATTTGATACTACT
TTTTTCcgttgaaatatatttttcatattacTTAGAATATCTGGTACTAT
CTTCTTTCAGAATTACCTAAAAGATATTAGTTTCTTAGGGTATACAAAGC
AGGCAGTTCTAATGCTTTTTCTTTCACCTAAAAATGTAGTGATGTGAATG
ATTGTAGAGACGTTAAACAATTGAACATTTTTACGTTCAAGAAAGAAGTT
TAATGTTACTGTGATCACTCCACGCTAATCAGAATAAGTGCAGATTTTTT
AAATCAGAGCTCTTCtgctttttttccggacacacaTTTCACTCTGCaaa
cttttcaaacttcttttcagACTTGACAAGAACGGAAAATTTGTTCACAT
GGCTTACAACAATGTAGTCCGAGATTTCATCAACGCTCCGGCAGAAAATA
TACAGCGAATATATGAAGCGTATTACAAACTCTCAGCCATGCTCCGAGAC
AAACACTACCAATTTCAATATAAAATGGCACCAGGGGATATGTTAGTATT
CGATAATAAGAGACTCATGCACGGGAGGACAGCTTTTGATCCAACAACGG
CAGATCGTATGCTGAACGGCTGTTATTTGGATTGGGACGATATTCGGTCA
ACGTGGAGAGTTTTACATAGCCGACACGAATAAACAAAATGATTTTCGGA
ATGACTGTATTGCCCGTTCCTTTATTATATGAAAGATTCGGTGTGAGCTT
AGAACAGTTGTTCAACCTAGGAATAGGGATTAGTaaaattttatataata
atagacaaaaattcttaattcagcaaatatcaatcaaaagaggtgaaatc
atattcaaagagtgctcgataaaCCAACCATGAGTAGAGCTtcggaaaat
gaagatgagCAATGAAGAAGTCTGAATCAAACGACTTTATCTTGAGCCGA
ATATAGACCTTCAATTTTTCGCGTGACTTGTCTACTTGAAATTTTAACCT
TGATAaggcatggaggtataaagaaaaacaggagttgaatgtgtcggtaa
ttggtcgttaaagtcttttgatttcttttataaaatgtatcaaaagaaat
tttaagttcgctcgatgaaataagactttttagtagaactcaagtttgct
ctgaacaatctaattatcagtattgaagattctagccttttaatatacga
aaattgaataaaacTTCGTACACGacacaagtttatgttccatttcgtta
tccgttcaattttgttttgaaaagatattttctcaagccagaaaatgaaa
agttatttataagcacacacaatttcagactcaatttgtagacataaagt
cgttGGAGAATTtcggaggaaagtatcaagcaatagagttcaccttaaag
aaaacattgatcgaaaactCTTATTAATTGACGAGGGATTATCAAATttt
caggcctttttttagtccaaatattttcttaaactgatgtcagaaacaat
gaatctcgtttcaactaatttttaaagcttcaaTGACCCAATAAAATTTT
ACCAATGAATAAAAGAGCTCATttaaaatgcacgatatatgagattattg
TCCAGCatacatacatcgtaacttttttaatcgtagggcgagttggttac
aatagcatacttctccagTTTCTTTAAATCATACATCCATGGATAAGGAC
ACTtctaaaatttaaagaaataaatGGCTGGGAAAtaacaatgtttttct
tttgaagataCTACAAGTACTGCACAGTCAAATAACGAGATGTAACTAAC
TCAGTTGATAAGGCTTTAAATTGAAAACAAACTCAAAATTTGCCAATTGT
AAAGAGTTTTCATATATAAGTAGCAAACGTCGGTTTACATTGGAAAAAat
acttgtttttatttctcGTTTAGCCTGTTGTTAGTGcagattaaaatttt
ttaatcatttgttGATGCACTCTAAGAATTAAAGTATGACTTTTTCATGA
AGGGTCAAATTAGTTGGTTAGTTCGTACTTATTAAAGTTAAGAATGGCTA
GATTAATGAAAAGAGCTATTTTGAGGAATCTTCAAAGTGCAATCTATGGC
CAGAAGCAGCCTTTCAGCAGCACATCGTTTATTCTGGCGAAAAGTATTTC
TAGAATCGAAGATGATAAAAGCACCAGGCTGTTAAAAGTGCAGTGGGAAA
ACGGGAAAGAAAACCTATACCCACATCTGTTTTTGAGAGATCACTGCNGG
AAAACGGGAAAGAAAACCTATACCCATATCTCTTTTTGAGAGATCACTGC
CAATGTCCCGAATGTTTTCATCCGTTTACGAAATCCCGGAAACTGGATAC
AGTCGCTGCTGTAGATTTAGGAATCAcaatcgatgacgtcacttatgAAG
CAAGCGATGACGTTGTCGAGGTCACGTGGCCTGATGGACACCAAAGTCGA
TTCACAGCAAAATGGCTGAAATCCCGATTTCTATCTCGAAAAGGAGAACA
AATCAATGATCGGACTGGTTTAGATACAGTTCAACGAGTTTCTTGGACTT
CAATAGAAATCCGTGAAAATACTCCGTTTGTTGATTTTCATGAAATCGAA
AGCGATGAAAAAGCTTTGAAGGGACACTTGGAAAATCTTTTAAGATATGG
TTTGAGTATTGTCAGAAATGCACCTTTGGAGTTATCAGTGTTACAAAAGA
TGGCAGATTTAATGTGTCTATCCATTGTGAGACACGTAAATTATGGGTAA
GTAGAATTGGAATGGTTTTATCAATTATACAAAACGGCAAACTACTCACA
TACAAGCAACATAAGCAATATACAGCGTGTAGATACCTGCAGTCCAATAG
AATACTTTATAAAAAGATAGACACCATGTttctttgaataaacgcccctt
ctttTTAACACCCCCTTAGAATAAACACCCCTCCGTAAAGGAAAAAACCC
CGAAATAAACGCCCCTCGAACAAACGCTTCCCCCCCCCCTTACGAGGGGC
GTTTAAACAAGTAGCTGTTAGGGAGAActaaatggagaaaaatttagata
TATGTTAGTAATTGTACTCTTTCATTATTCAAACTACTGATCTTGAACAA
GGTTTCCAATCACTCTATCAAATTAACCTTAGTTGAAGATTATTTAATCA
ATGCCCTCTGCTTTTAAACGCCCCTTCGAGTAAACGCCCCttctaaaatc
caaaaatatatataatataaaatagGTATAATAAACGCCGGgggtttatt
cgaagtaatgcgATAGATGGATATAAAgaagtactttaatgggattaatt
ttggtggggaccaaatttcgcggatttcacGGATTTAGCTGTCATCCGTG
AAAATATGTCAAAGCTCAATAGCAAAATTTGATAACCATTTATCCAACAA
ATTATTTCCATTAAAGTAAACGCTTTAAGGGTAAagctcttttattttgt
ttcacaGACCAACTAACACTGTTGAATCCAAACCATCACCTAGTAACTTG
GCATACACAGGAAGTGCGCTACCAATGCACACAGATCTTCCTTACTACGA
CTATCGACCAGGCGTAAGTAACAAGAAAGAACATTTTCTACTAAATTCAT
TTATTTCTGCAATATCCTCTCACAATATCCtctttttcgcccgaacttta
aattgctgaaaacgaagaattaattaaaattcccaatatattttgaccga
gattgtcccttttgtctcaaatatcaTGACACATTGTAGGTTCAACTTCT
ACATTGCATTCGCCAATCAAGTGGAGGTGAATCAGACGGTGCAAGTCTTC
TTGTGGACGGAATGAAAGTCGTTGAAGACCTCAAAGAAAATTCTCCTGAA
GATTATCATTTGCTGACAACGACAAATTTCAGATTCAATGACGAGGGAAC
GGACTTCTACGGTGAATTTGATCTGCGATTTGAGAGACCTATTATTGAGT
AAGCAtttattgttgatttttttcactTAACACATCAAAAATGAAACTTC
ACAGTCGGTAGAAATTTTATAGTACTTTTCCGTTGAACATATTTTCTATA
TTACTTAGAAGATCTGGTATAGGGTATTTAGGGTATACAAAGCAGGCACG
CTTCAAATGGGTTTTCTTTCATCTAAAAATGCAGTGTATGAGAATGGTTG
TAGAGACgttaaaaagttgagaacattttcacattcaaaaaacaagttta
atGTTACTGTGATCACTCCACGAAAGTCCGAATACCttaagagaaagaaa
ttttggcgcgAAGAGATTTTGGCGAAGAAGCCCATTCGCAAAATTTCGGC
GGAATTTATTTTGACGactaaataaaatttctaaatttgacgataattaa
ttttggcgaacgtTGAATATTTAAGCTTATAAAAAGGatgaaaaacaggt
ttttttaaggagaaatagagactagtgtgaaagaaatttaaatttgacga
taattaattttagcgaacgTTGAATATTTAAGCTTATAAAAAGGatgaaa
aacaggtttttttaggagaaatagagactagtgtgaaagaaatttaaatt
tgacgataattaattttagcgaacgTTGAATATTTAAGCTTATAAAAAGG
atgaaaaacaggtttttttaggagaaatagagactaGTGTGAAGGAAATT
TAAATTTGacaagaattaattttggcgaattgcATATAAATGtaaatttc
tttccgccaaaatttcttctcttaagttAAGTGCAGATTCTTTATATAAG
AGCTCTTCCgttttttttccggacacaccAATTTCACTCTgcaaactttt
caaatttctttttcagactCGACAAGAACGGAAAATTCGTCCACATAGCT
TACAACAATCCAGTCCGAGATTTTATCAACGCTCCGGCAGAAAATATACA
GCGAATATATGAAGCGTATTACAAACTTTCAGCCATGCTCCGAGACAAAC
ACTACCAATTTCAATATAAAATGGCGCCAGGGGATATGTTAGTATTCGAT
AATAATAGAGTCTTGCACGGGAGAATGGCTTTTGATGCGACATCGTCAGA
TCGTAAGCTACACGGCTCTTTTTTGGATTGGGACGATATTCGGTCAACGT
GGAGAGTGCTACATAACCGATAAGGATAAACAAATTGATTTCCGGATTGG
CAGTGTTGAAGATATATGAGGAAAAAATGATCATTCATTACATACCCATT
ACCGGACTATTAAATTCAGGATATACTTATACTTGTCAACAGTATttcta
agaaattttaaaagtcttttgttcattggagtctctataactcgaacctc
tacaactcgaacatctatt

Coding sequence (CDS) from alignment at scaffold_288:66784..77452+

>TCONS_00057317 ID=TCONS_00057317|Name=TCONS_00057317|organism=Clytia hemisphaerica|type=CDS|length=6360bp|location=Sequence derived from alignment at scaffold_288:66784..77452+ (Clytia hemisphaerica)
ATGGCTAGATTGATGAAAAGATCTATTTTGAGGAATCTTCAAAGTGCAAT
ATATGGCCAGAAGCAGCCTTTAAGCAGCGCATCGTATTTTCTGGCGAAAA
GTATTTCTAGAATCGAAGATGATAAAAGCACAAGGCTGTTAAAAGTACAA
TGGGAAAACGGGAAAGAAAACCTATACCCATATCTCTTTTTGAGAGATCA
CTGCCAATGTCCCGAATGTTTTCATCCGTTTACAAAATCCCGGAAACTGG
ATACAGTCGCTGCTGTAGATTTAGGAATCACAATCGATGACTTCGCTTAT
GACGCAAGCGATGACGTTGTCGAGGTCACGTGGCCTGATGGACACCAAAG
TCGATTCACGGCAAAATGGCTGAAATCCCGATTTCTATCTCGGAAAGGAG
AACAAATCAATGATCGAACTGGTTTAGATTCAGTTCAACGAGTttcttgg
acttcaatggaaaTCCGTGAAAATACTCCGTTTGTTGATTTTCATGAAAT
CGAAAGCGATGAAAAAGCTTTGAAGGGACACTTGGAAAATCTTTTAAGAT
ATGGCTTAAGTATTGTCAGAAATGCACCTTTGGAGTTATCAGTGTTACAA
AAGATGGCAGATTTAATGTGCTTATCCATTGTGAGACACACGAATTATGG
ACCGTTTTTCACTGTTGAATCCAAACCATCACCTAGCAACTTGGCATACA
CAGGAAGTGCGCTACCAATGCACACAGATCTTCCTTTTTACGACTATCAA
CCAGGCGTTCAACTTCTACATTGCATTCGCCAATCAAGTGGAGGTGAATC
AGACGGTGCAAGTCTTCTTGTGGACGGAATGAAAGTCGTTGAAGACCTCA
AAGAAAATTCTCCTGAAGATTATCATTTGCTGACAACGACAAATTTCAGA
TTCAATGACGAGGGAACGGACTTCTACGGTGAATTTGATCTGCGATTTGA
GAGACCTATTATTGAactCGACAAGAACGGAAAATTCGTCCACATAGCTT
ACAACAATCCAGTCCGAGATTTTATCAACGCTCCGGCAGAAAATATACAG
CGAATATATGAAGCGTATTACAAACTTTCAGCCATGCTCCGAGACAAACA
CTACCAATTTCAATATAAAATGGCGCCAGGGGATATGTTAGTATTCGATA
ATAATAGAGTCTTGCACGGGAGAATGGCTTTTGATGCGACATCGTCAGAT
CGTAAGCTACACGGCTCTTTTTTGGATTGGGACGATATTCGGTCAACGTG
GAGAGTGCTACATAACCGATAAATGGCTAGATTGATGAAAAGATCTATTT
TGAGGAATCTTCAAAGTGCAATATATGGCCAGAAGCAGCCTTTAAGCAGC
GCATCGTATTTTCTGGCGAAAAGTATTTCTAGAATCGAAGATGATAAAAG
CACAAGGCTGTTAAAAGTACAATGGGAAAACGGGAAAGAAAACCTATACC
CATATCTCTTTTTGAGAGATCACTGCCAATGTCCCGAATGTTTTCATCCG
TTTACAAAATCCCGGAAACTGGATACAGTCGCTGCTGTAGATTTAGGAAT
CACAATCGATGACTTCGCTTATGACGCAAGCGATGACGTTGTCGAGGTCA
CGTGGCCTGATGGACACCAAAGTCGATTCACGGCAAAATGGCTGAAATCC
CGATTTCTATCTCGGAAAGGAGAACAAATCAATGATCGAACTGGTTTAGA
TTCAGTTCAACGAGTttcttggacttcaatggaaaTCCGTGAAAATACTC
CGTTTGTTGATTTTCATGAAATCGAAAGCGATGAAAAAGCTTTGAAGGGA
CACTTGGAAAATCTTTTAAGATATGGCTTAAGTATTGTCAGAAATGCACC
TTTGGAGTTATCAGTGTTACAAAAGATGGCAGATTTAATGTGCTTATCCA
TTGTGAGACACACGAATTATGGACCGTTTTTCACTGTTGAATCCAAACCA
TCACCTAGCAACTTGGCATACACAGGAAGTGCGCTACCAATGCACACAGA
TCTTCCTTTTTACGACTATCAACCAGGCGTTCAACTTCTACATTGCATTC
GCCAATCAAGTGGAGGTGAATCAGACGGTGCAAGTCTTCTTGTGGACGGA
ATGAAAGTCGTTGAAGACCTCAAAGAAAATTCTCCTGAAGATTATCATTT
GCTGACAACGACAAATTTCAGATTCAATGACGAGGGAACGGACTTCTACG
GTGAATTTGATCTGCGATTTGAGAGACCTATTATTGAactCGACAAGAAC
GGAAAATTCGTCCACATAGCTTACAACAATCCAGTCCGAGATTTTATCAA
CGCTCCGGCAGAAAATATACAGCGAATATATGAAGCGTATTACAAACTTT
CAGCCATGCTCCGAGACAAACACTACCAATTTCAATATAAAATGGCGCCA
GGGGATATGTTAGTATTCGATAATAATAGAGTCTTGCACGGGAGAATGGC
TTTTGATGCGACATCGTCAGATCGTAAGCTACACGGCTCTTTTTTGGATT
GGGACGATATTCGGTCAACGTGGAGAGTGCTACATAACCGATAAATGGCT
AGATTGATGAAAAGATCTATTTTGAGGAATCTTCAAAGTGCAATATATGG
CCAGAAGCAGCCTTTAAGCAGCGCATCGTATTTTCTGGCGAAAAGTATTT
CTAGAATCGAAGATGATAAAAGCACAAGGCTGTTAAAAGTACAATGGGAA
AACGGGAAAGAAAACCTATACCCATATCTCTTTTTGAGAGATCACTGCCA
ATGTCCCGAATGTTTTCATCCGTTTACAAAATCCCGGAAACTGGATACAG
TCGCTGCTGTAGATTTAGGAATCACAATCGATGACTTCGCTTATGACGCA
AGCGATGACGTTGTCGAGGTCACGTGGCCTGATGGACACCAAAGTCGATT
CACGGCAAAATGGCTGAAATCCCGATTTCTATCTCGGAAAGGAGAACAAA
TCAATGATCGAACTGGTTTAGATTCAGTTCAACGAGTttcttggacttca
atggaaaTCCGTGAAAATACTCCGTTTGTTGATTTTCATGAAATCGAAAG
CGATGAAAAAGCTTTGAAGGGACACTTGGAAAATCTTTTAAGATATGGCT
TAAGTATTGTCAGAAATGCACCTTTGGAGTTATCAGTGTTACAAAAGATG
GCAGATTTAATGTGCTTATCCATTGTGAGACACACGAATTATGGACCGTT
TTTCACTGTTGAATCCAAACCATCACCTAGCAACTTGGCATACACAGGAA
GTGCGCTACCAATGCACACAGATCTTCCTTTTTACGACTATCAACCAGGC
GTTCAACTTCTACATTGCATTCGCCAATCAAGTGGAGGTGAATCAGACGG
TGCAAGTCTTCTTGTGGACGGAATGAAAGTCGTTGAAGACCTCAAAGAAA
ATTCTCCTGAAGATTATCATTTGCTGACAACGACAAATTTCAGATTCAAT
GACGAGGGAACGGACTTCTACGGTGAATTTGATCTGCGATTTGAGAGACC
TATTATTGAactCGACAAGAACGGAAAATTCGTCCACATAGCTTACAACA
ATCCAGTCCGAGATTTTATCAACGCTCCGGCAGAAAATATACAGCGAATA
TATGAAGCGTATTACAAACTTTCAGCCATGCTCCGAGACAAACACTACCA
ATTTCAATATAAAATGGCGCCAGGGGATATGTTAGTATTCGATAATAATA
GAGTCTTGCACGGGAGAATGGCTTTTGATGCGACATCGTCAGATCGTAAG
CTACACGGCTCTTTTTTGGATTGGGACGATATTCGGTCAACGTGGAGAGT
GCTACATAACCGATAAATGGCTAGATTGATGAAAAGATCTATTTTGAGGA
ATCTTCAAAGTGCAATATATGGCCAGAAGCAGCCTTTAAGCAGCGCATCG
TATTTTCTGGCGAAAAGTATTTCTAGAATCGAAGATGATAAAAGCACAAG
GCTGTTAAAAGTACAATGGGAAAACGGGAAAGAAAACCTATACCCATATC
TCTTTTTGAGAGATCACTGCCAATGTCCCGAATGTTTTCATCCGTTTACA
AAATCCCGGAAACTGGATACAGTCGCTGCTGTAGATTTAGGAATCACAAT
CGATGACTTCGCTTATGACGCAAGCGATGACGTTGTCGAGGTCACGTGGC
CTGATGGACACCAAAGTCGATTCACGGCAAAATGGCTGAAATCCCGATTT
CTATCTCGGAAAGGAGAACAAATCAATGATCGAACTGGTTTAGATTCAGT
TCAACGAGTttcttggacttcaatggaaaTCCGTGAAAATACTCCGTTTG
TTGATTTTCATGAAATCGAAAGCGATGAAAAAGCTTTGAAGGGACACTTG
GAAAATCTTTTAAGATATGGCTTAAGTATTGTCAGAAATGCACCTTTGGA
GTTATCAGTGTTACAAAAGATGGCAGATTTAATGTGCTTATCCATTGTGA
GACACACGAATTATGGACCGTTTTTCACTGTTGAATCCAAACCATCACCT
AGCAACTTGGCATACACAGGAAGTGCGCTACCAATGCACACAGATCTTCC
TTTTTACGACTATCAACCAGGCGTTCAACTTCTACATTGCATTCGCCAAT
CAAGTGGAGGTGAATCAGACGGTGCAAGTCTTCTTGTGGACGGAATGAAA
GTCGTTGAAGACCTCAAAGAAAATTCTCCTGAAGATTATCATTTGCTGAC
AACGACAAATTTCAGATTCAATGACGAGGGAACGGACTTCTACGGTGAAT
TTGATCTGCGATTTGAGAGACCTATTATTGAactCGACAAGAACGGAAAA
TTCGTCCACATAGCTTACAACAATCCAGTCCGAGATTTTATCAACGCTCC
GGCAGAAAATATACAGCGAATATATGAAGCGTATTACAAACTTTCAGCCA
TGCTCCGAGACAAACACTACCAATTTCAATATAAAATGGCGCCAGGGGAT
ATGTTAGTATTCGATAATAATAGAGTCTTGCACGGGAGAATGGCTTTTGA
TGCGACATCGTCAGATCGTAAGCTACACGGCTCTTTTTTGGATTGGGACG
ATATTCGGTCAACGTGGAGAGTGCTACATAACCGATAAATGGCTAGATTG
ATGAAAAGATCTATTTTGAGGAATCTTCAAAGTGCAATATATGGCCAGAA
GCAGCCTTTAAGCAGCGCATCGTATTTTCTGGCGAAAAGTATTTCTAGAA
TCGAAGATGATAAAAGCACAAGGCTGTTAAAAGTACAATGGGAAAACGGG
AAAGAAAACCTATACCCATATCTCTTTTTGAGAGATCACTGCCAATGTCC
CGAATGTTTTCATCCGTTTACAAAATCCCGGAAACTGGATACAGTCGCTG
CTGTAGATTTAGGAATCACAATCGATGACTTCGCTTATGACGCAAGCGAT
GACGTTGTCGAGGTCACGTGGCCTGATGGACACCAAAGTCGATTCACGGC
AAAATGGCTGAAATCCCGATTTCTATCTCGGAAAGGAGAACAAATCAATG
ATCGAACTGGTTTAGATTCAGTTCAACGAGTttcttggacttcaatggaa
aTCCGTGAAAATACTCCGTTTGTTGATTTTCATGAAATCGAAAGCGATGA
AAAAGCTTTGAAGGGACACTTGGAAAATCTTTTAAGATATGGCTTAAGTA
TTGTCAGAAATGCACCTTTGGAGTTATCAGTGTTACAAAAGATGGCAGAT
TTAATGTGCTTATCCATTGTGAGACACACGAATTATGGACCGTTTTTCAC
TGTTGAATCCAAACCATCACCTAGCAACTTGGCATACACAGGAAGTGCGC
TACCAATGCACACAGATCTTCCTTTTTACGACTATCAACCAGGCGTTCAA
CTTCTACATTGCATTCGCCAATCAAGTGGAGGTGAATCAGACGGTGCAAG
TCTTCTTGTGGACGGAATGAAAGTCGTTGAAGACCTCAAAGAAAATTCTC
CTGAAGATTATCATTTGCTGACAACGACAAATTTCAGATTCAATGACGAG
GGAACGGACTTCTACGGTGAATTTGATCTGCGATTTGAGAGACCTATTAT
TGAactCGACAAGAACGGAAAATTCGTCCACATAGCTTACAACAATCCAG
TCCGAGATTTTATCAACGCTCCGGCAGAAAATATACAGCGAATATATGAA
GCGTATTACAAACTTTCAGCCATGCTCCGAGACAAACACTACCAATTTCA
ATATAAAATGGCGCCAGGGGATATGTTAGTATTCGATAATAATAGAGTCT
TGCACGGGAGAATGGCTTTTGATGCGACATCGTCAGATCGTAAGCTACAC
GGCTCTTTTTTGGATTGGGACGATATTCGGTCAACGTGGAGAGTGCTACA
TAACCGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036120XLOC_036120Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057317-exon-scaffold_288-1491911889:66784..67180TCONS_00057317-exon-scaffold_288-1491911889:66784..67180Clytia hemisphaericaexon
TCONS_00057317-exon-scaffold_288-1510915933:66784..67180TCONS_00057317-exon-scaffold_288-1510915933:66784..67180Clytia hemisphaericaexon
TCONS_00057317-exon-scaffold_288-1575043694:66784..67180TCONS_00057317-exon-scaffold_288-1575043694:66784..67180Clytia hemisphaericaexon
TCONS_00057317-exon-scaffold_288-1491911889:67248..67573TCONS_00057317-exon-scaffold_288-1491911889:67248..67573Clytia hemisphaericaexon
TCONS_00057317-exon-scaffold_288-1510915933:67248..67573TCONS_00057317-exon-scaffold_288-1510915933:67248..67573Clytia hemisphaericaexon
TCONS_00057317-exon-scaffold_288-1575043694:67248..67573TCONS_00057317-exon-scaffold_288-1575043694:67248..67573Clytia hemisphaericaexon
TCONS_00057317-exon-scaffold_288-1491911889:70122..70227TCONS_00057317-exon-scaffold_288-1491911889:70122..70227Clytia hemisphaericaexon
TCONS_00057317-exon-scaffold_288-1510915933:70122..70227TCONS_00057317-exon-scaffold_288-1510915933:70122..70227Clytia hemisphaericaexon
TCONS_00057317-exon-scaffold_288-1575043694:70122..70227TCONS_00057317-exon-scaffold_288-1575043694:70122..70227Clytia hemisphaericaexon
TCONS_00057317-exon-scaffold_288-1491911889:75873..76081TCONS_00057317-exon-scaffold_288-1491911889:75873..76081Clytia hemisphaericaexon
TCONS_00057317-exon-scaffold_288-1510915933:75873..76081TCONS_00057317-exon-scaffold_288-1510915933:75873..76081Clytia hemisphaericaexon
TCONS_00057317-exon-scaffold_288-1575043694:75873..76081TCONS_00057317-exon-scaffold_288-1575043694:75873..76081Clytia hemisphaericaexon
TCONS_00057317-exon-scaffold_288-1491911889:76950..77452TCONS_00057317-exon-scaffold_288-1491911889:76950..77452Clytia hemisphaericaexon
TCONS_00057317-exon-scaffold_288-1510915933:76950..77452TCONS_00057317-exon-scaffold_288-1510915933:76950..77452Clytia hemisphaericaexon
TCONS_00057317-exon-scaffold_288-1575043694:76950..77452TCONS_00057317-exon-scaffold_288-1575043694:76950..77452Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057317-proteinTCONS_00057317-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:66784..77452 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0359187	0	0.903226	1.1895	0.756927	0.313972	0.59399	0.631993	0	0.301082	0.175559	0.00590642	0.0523015	0	0.751498	0.1201	0	0.123393	3.96771e-10	0	0.537805	0.769744	0.0858513	0	0.100432	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003819TauD/TfdA-like
IPR010376DUF971
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0016491 oxidoreductase activity
Blast
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BLAST of TCONS_00057317 vs. Swiss-Prot (Human)
Match: BODG (Gamma-butyrobetaine dioxygenase OS=Homo sapiens GN=BBOX1 PE=1 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.527e-71
Identity = 144/399 (36.09%), Postives = 218/399 (54.64%), Query Frame = 2 
Query:  164 LAKSISRIEDDKSTRLLKVQWENGKENLYPYLFLRDHCQCPECFHPFTKSRKLDTVAAVDLGITIDDFAYDASDDVVEVTWPDGHQSRFTAKWLKSRFLSRKGEQINDRTGLDSVQRVSWTSMEIRENTPFVDFHEI-ESDEKALKGHLENLLRYGLSIVRNA---PLELSVLQKMADLMCLSIVRHTNYGPFFTVESKPSPSNLAYTGSALPMHTDLPFYDYQPGVQLLHCIRQSSGGESDGASLLVDGMKVVEDLKENSPEDYHLLTTTNFRFNDEGTDFYGEFDLRFERPIIELDKNGKFVHIAYNNPVRDFI-NAPAENIQRIYEAYYKLSAMLRDKHYQFQYKMAPGDMLVFDNNRVLHGRMAFDA-TSSDRKLHGSFLDWDDIRSTWRVLHNR 1342
            +A +I + E      L+++ W + +E+LYP ++LRD+C C +C+    K+RKL  V A+D+ I I    +D     V +TWPD H S F A WLK R  S++      R       +   + +++    P +DF ++   DE A K  L  L + G+  +  A   P E+S L K    + L+   HT     + V+ K   +N+AYT   L  HTD P   + PGVQLLHCI+Q+  G   G S +VDG  V + LK+N+P+ + +L++T   F D G D Y +F ++ +  IIELD  G+ V I +NN  RD I + P E +Q  Y A  +   ++  K  +F +KM PGD++ FDN R+LHGR +++A T   R L G++ DWD + S  R+L  R
Sbjct:    1 MACTIQKAEALDGAHLMQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKL-LVEALDVNIGIKGLIFDRKK--VYITWPDEHYSEFQADWLKKRCFSKQARAKLQRELFFPECQYWGSELQL----PTLDFEDVLRYDEHAYKW-LSTLKKVGIVRLTGASDKPGEVSKLGKRMGFLYLTFYGHT-----WQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVTG---GDSEIVDGFNVCQKLKKNNPQAFQILSSTFVDFTDIGVD-YCDFSVQSKHKIIELDDKGQVVRINFNNATRDTIFDVPVERVQPFYAALKEFVDLMNSKESKFTFKMNPGDVITFDNWRLLHGRRSYEAGTEISRHLEGAYADWDVVMSRLRILRQR 382
The following BLAST results are available for this feature:
BLAST of TCONS_00057317 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BODG3.527e-7136.09Gamma-butyrobetaine dioxygenase OS=Homo sapiens GN... [more]
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