TCONS_00057315 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057315
Unique NameTCONS_00057315
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1341

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057315 ID=TCONS_00057315|Name=TCONS_00057315|organism=Clytia hemisphaerica|type=transcript|length=1341bp
attttaatcattTGTTGATACACTCTTAGAGTGTATTCATGAAGGGTCAA
ATTAGTTGGTTAGTTCGTACTTATTAAAGTTAAGAATGGCTAGATTGATG
AAAAGATCTATTTTGAGGAATCTTCAAAGTGCAATATATGGCCAGAAGCA
GCCTTTAAGCAGCGCATCGTATTTTCTGGCGAAAAGTATTTCTAGAATCG
AAGATGATAAAAGCACAAGGCTGTTAAAAGTACAATGGGAAAACGGGAAA
GAAAACCTATACCCATATCTCTTTTTGAGAGATCACTGCCAATGTCCCGA
ATGTTTTCATCCGTTTACAAAATCCCGGAAACTGGATACAGTCGCTGCTG
TAGATTTAGGAATCACAATCGATGACTTCGCTTATGACGCAAGCGATGAC
GTTGTCGAGGTCACGTGGCCTGATGGACACCAAAGTCGATTCACGGCAAA
ATGGCTGAAATCCCGATTTCTATCTCGGAAAGGAGAACAAATCAATGATC
GAACTGGTTTAGATTCAGTTCAACGAGTttcttggacttcaatggaaaTC
CGTGAAAATACTCCGTTTGTTGATTTTCATGAAATCGAAAGCGATGAAAA
AGCTTTGAAGGGACACTTGGAAAATCTTTTAAGATATGGCTTAAGTATTG
TCAGAAATGCACCTTTGGAGTTATCAGTGTTACAAAAGATGGCAGATTTA
ATGTGCTTATCCATTGTGAGACACACGAATTATGGACCGTTTTTCACTGT
TGAATCCAAACCATCACCTAGCAACTTGGCATACACAGGAAGTGCGCTAC
CAATGCACACAGATCTTCCTTTTTACGACTATCAACCAGGCGTTCAACTT
CTACATTGCATTCGCCAATCAAGTGGATCTGAATCAGACGGTGCAAGTCT
TCTTGTGGACGCCATGAAAGTCGTTGAAGACCTCAAAGGAAATTCTCCTG
AAGATTATCATTTGCTGACGACAACAAATTTCAGATTCAATGACGAGGGG
ACTGACCTCTACGGTGAATTCGATCTTCAATTTGAGAGACCTACTATTGG
ACTTGACAAGAACGGAAAATTTGTTCACATGGCTTACAACAATGTAGTCC
GAGATTTCATCAACGCTCCGGCAGAAAATATACAGCGAATATATGAAGCG
TATTACAAACTCTCAGCCATGCTCCGAGACAAACACTACCAATTTCAATA
TAAAATGGCACCAGGGGATATGTTAGTATTCGATAATAAGAGACTCATGC
ACGGGAGGACAGCTTTTGATCCAACAACGGCAGATCGTATGCTGAACGGC
TGTTATTTGGATTGGGACGATATTCGGTCAACGTGGAGAGT
Run BLAST on NCBI

transcript from alignment at scaffold_288:66772..72794+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057315 ID=TCONS_00057315|Name=TCONS_00057315|organism=Clytia hemisphaerica|type=transcript|length=6023bp|location=Sequence derived from alignment at scaffold_288:66772..72794+ (Clytia hemisphaerica)
attttaatcattTGTTGATACACTCTTAGAGTGTATTCATGAAGGGTCAA
ATTAGTTGGTTAGTTCGTACTTATTAAAGTTAAGAATGGCTAGATTGATG
AAAAGATCTATTTTGAGGAATCTTCAAAGTGCAATATATGGCCAGAAGCA
GCCTTTAAGCAGCGCATCGTATTTTCTGGCGAAAAGTATTTCTAGAATCG
AAGATGATAAAAGCACAAGGCTGTTAAAAGTACAATGGGAAAACGGGAAA
GAAAACCTATACCCATATCTCTTTTTGAGAGATCACTGCCAATGTCCCGA
ATGTTTTCATCCGTTTACAAAATCCCGGAAACTGGATACAGTCGCTGCTG
TAGATTTAGGAATCACAATCGATGACTTCGCTTATGACGCAAGCGATGAC
GTTGTCGAGGTCACGTGGCCTGATGGACACAAAAGTCGATTCACGGCAGN
ATGAAGCAAGCGATGACGTTGTCGAGGTCACGTGGCCTGATGGACACCAA
AGTCGATTCACGGCAAAATGGCTGAAATCCCGATTTCTATCTCGGAAAGG
AGAACAAATCAATGATCGAACTGGTTTAGATTCAGTTCAACGAGTttctt
ggacttcaatggaaaTCCGTGAAAATACTCCGTTTGTTGATTTTCATGAA
ATCGAAAGCGATGAAAAAGCTTTGAAGGGACACTTGGAAAATCTTTTAAG
ATATGGCTTAAGTATTGTCAGAAATGCACCTTTGGAGTTATCAGTGTTAC
AAAAGATGGCAGATTTAATGTGCTTATCCATTGTGAGACACACGAATTAT
GGGTAAGTGGAAATAAAATGGTTTTATCAATTATACAAAACGGCAAACTA
CTCACATACAAGCAACATAAGCAATAGAGAGCGTCTAGATACCTCCATTC
CAATAGAATACTTTATAAAAAGATAGATATCGAGTTCAGAAATTACGTCA
TAATTTTCCGAGTCTTTAGGtgaggaaaatatagaaaactctgaacgaga
aaaatatatccTATATTGTACGAGaaaagtgtgataactggtttattgtc
aacttgaaaaatatcaacaaacttttccCTCTCCATTCAGGCCAATCTcg
cacttatttctaccatatgtgtagatatgtaaacatccgtaaatctacca
tatgtgtagatattagaatccgtaaatctaccatatgcgNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAACGA
TGACAAACCTTAACCCTAACTAtccaaagaacgacatatttcaaacccta
accctaactatcaaagaacgaaacGACATATTTTGCCCtccacaaccccg
accaaaaagtgactgtaccacccctagcgATTCATTCCTTTTTGTTCATC
ACGCTATTTAACTACATGTGGTGTTAACATTACGCATGCGCATAACTCTT
TATGTTAAGCATTTACcgtatctacacatatggtagatttacgatatcta
cacatatggtagattgacggattctaatatctacacatatggtagattta
cggatgtttacatatctacacatatggtagaaataagtgtGAGAATGTGT
TGCTCCATTTGTGTCtctttctttgtgttttttttttacttcctgTATTT
TGGTGAAATCGACATCAAAACAGTCGACTTTTCGTAAATGATTcgaatgg
tcattaaaatatcaaaacaatttttaaaaacttttctgaGTATTGAGAgt
agaaaagaaaacattcctTAGAATAAATTTTGGGATAAGATACCAAGGAA
TTATAAGAGACACTGGATATATGactcataaaacggtggagagcgaccat
tgtattttctttgttttagaaaacaattgGTGTTCCAGctatgtccgcaa
aggacaactgtcatggcggctcaaatgtatctgattttgaaaaatgttta
ttaNtgggaattggatgagtgatttttaataagaaatgcaataaaaatgc
ttcgaaaaatcatttaatgagggaaggagagtgaacaataatatcattac
tgcggacttgtatatccagtgtataataaatccttgaagATACAAAAGTA
AgtacaaaatatgatctctcgcttaccagacTTCTTTTTTGAACGCAGTC
TTGTATCAGcttgtatttgtacggtacaatatgaaatacagcatttatta
gcctgggaatccaagcgttaaacttttttcacagtctagtttatgatatt
ttggctgctggtttaacgcttggcgcaggtaactcgcctgcagggagatt
tttccctgcaatgcaggttcggcctgattggccagctctcggcgtattac
ttagcagtactttcgcgcgcattttgataatttcgatgcgcacgcataat
ttatggaaaaagctgactctgcagaaaaaaggaaaacaaatgaaaatgaa
aacatatagattcatttaaaaacaaaatggctgttggctggatgtctaaa
tacatgtggctgatgttttgatgtggtttttagtagttttgaaagtcttt
agagcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctgtgtcagactaa
tctacctgcaccaagctctataattttagaactttgtgaggtgaggtatt
ttttgttttttctaaaattatgagcttggattcccaggctaagcatttat
gtacgcgtttttaACCAAttagattgctcatatttttcatgctgataaTA
AACGcgtttaaacgccccctcgaataaacactccttctaaaattcaaaaa
aattgatttaggTGTCATCCACGAAAATAAGTTCAACAGCGAAATTATTC
CCATTAAAGTAAGCGCTTAATGGGTAAAGCTCTCTGTTTTTATTTCACAG
ACCGTTTTTCACTGTTGAATCCAAACCATCACCTAGCAACTTGGCATACA
CAGGAAGTGCGCTACCAATGCACACAGATCTTCCTTTTTACGACTATCAA
CCAGGCGTAAGtaacaagaaaaacattttctacTCAATCTAAAATGTATC
TCTGCAATATCCTCTCAGAATTACATCACTATTCCAAcatctgattggtt
gtaagtgacgtattaGGTAAAAAAGCCCAGAAAGGTTTACATAATGTCGT
AATCACATAACAtacttttttcaaagggataatcagatggtctgagattt
TAAGGGTACCTgttccccgggggggggcactcgatctgaaaacgaccata
cgttcggcccaaaatttggcttctaaaatcggacccttacagtgcagtga
atttccatgaaaaatcgtacccttacagtgcactttttcaaaatttctcg
cccgtgcCGTAAGGGCGAAAACTTTTGCaactttccaagaaaatgtggaa
tttttcctccaaaattggccttttatcacaatttcctacccttacagtgc
agttcagtgcagttttgtaatttcctacccttacagtgcactagctgaac
tatgaaaaacctaccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaatacccgaagt
tttcctcttcgtcggtcaaatcgctataaaatcgcttaaatttcctcatt
cgccgtaccagatataaaaagcttccgtcgtgcctgaaTATTAATAAAGT
TTTGGGTAAAGAAAAATACAGTTCGTTATTTCCTGTAGGTTCAGTACTGA
AATATCTCAATTATGGCAATACCATCTGATAATCTCTTTAGTGTTATCAG
AATTTAAAGAAATTCAATGGAGATTTACTTTCATTATATATTTCGATTTC
GGAGGGGTTAAAGTGGCTTCAGGGTCAATTCAGGCCTTTTTAGAGTTTTT
GGATCTTGTGATCTTAAGACTTATGTTAAAACTAAGACTTAAACTATCAT
ATTCTAGGAGTAAGttagaaaactttgaaattttgcagggAATTCCCTTT
TTATCTCAAATACCATGACAATGCTTGTAGGTTCAACTTCTACATTGCAT
TCGCCAATCAAGTGGATCTGAATCAGACGGTGCAAGTCTTCTTGTGGACG
CCATGAAAGTCGTTGAAGACCTCAAAGGAAATTCTCCTGAAGATTATCAT
TTGCTGACGACAACAAATTTCAGATTCAATGACGAGGGGACTGACCTCTA
CGGTGAATTCGATCTTCAATTTGAGAGACCTACTATTGGGTAAGCTTtaa
ttgttgatttttttttaattaacacATCAAAGAATAATAACGGGTAAAAA
TTTGATACTACTTTTTTCcgttgaaatatatttttcatattacTTAGAAT
ATCTGGTACTATCTTCTTTCAGAATTACCTAAAAGATATTAGTTTCTTAG
GGTATACAAAGCAGGCAGTTCTAATGCTTTTTCTTTCACCTAAAAATGTA
GTGATGTGAATGATTGTAGAGACGTTAAACAATTGAACATTTTTACGTTC
AAGAAAGAAGTTTAATGTTACTGTGATCACTCCACGCTAATCAGAATAAG
TGCAGATTTTTTAAATCAGAGCTCTTCtgctttttttccggacacacaTT
TCACTCTGCaaacttttcaaacttcttttcagACTTGACAAGAACGGAAA
ATTTGTTCACATGGCTTACAACAATGTAGTCCGAGATTTCATCAACGCTC
CGGCAGAAAATATACAGCGAATATATGAAGCGTATTACAAACTCTCAGCC
ATGCTCCGAGACAAACACTACCAATTTCAATATAAAATGGCACCAGGGGA
TATGTTAGTATTCGATAATAAGAGACTCATGCACGGGAGGACAGCTTTTG
ATCCAACAACGGCAGATCGTATGCTGAACGGCTGTTATTTGGATTGGGAC
GATATTCGGTCAACGTGGAGAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036120XLOC_036120Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057315-exon-scaffold_288-1491911889:66772..67180TCONS_00057315-exon-scaffold_288-1491911889:66772..67180Clytia hemisphaericaexon
TCONS_00057315-exon-scaffold_288-1510915933:66772..67180TCONS_00057315-exon-scaffold_288-1510915933:66772..67180Clytia hemisphaericaexon
TCONS_00057315-exon-scaffold_288-1575043694:66772..67180TCONS_00057315-exon-scaffold_288-1575043694:66772..67180Clytia hemisphaericaexon
TCONS_00057315-exon-scaffold_288-1491911889:67248..67573TCONS_00057315-exon-scaffold_288-1491911889:67248..67573Clytia hemisphaericaexon
TCONS_00057315-exon-scaffold_288-1510915933:67248..67573TCONS_00057315-exon-scaffold_288-1510915933:67248..67573Clytia hemisphaericaexon
TCONS_00057315-exon-scaffold_288-1575043694:67248..67573TCONS_00057315-exon-scaffold_288-1575043694:67248..67573Clytia hemisphaericaexon
TCONS_00057315-exon-scaffold_288-1491911889:70122..70227TCONS_00057315-exon-scaffold_288-1491911889:70122..70227Clytia hemisphaericaexon
TCONS_00057315-exon-scaffold_288-1510915933:70122..70227TCONS_00057315-exon-scaffold_288-1510915933:70122..70227Clytia hemisphaericaexon
TCONS_00057315-exon-scaffold_288-1575043694:70122..70227TCONS_00057315-exon-scaffold_288-1575043694:70122..70227Clytia hemisphaericaexon
TCONS_00057315-exon-scaffold_288-1491911889:71902..72110TCONS_00057315-exon-scaffold_288-1491911889:71902..72110Clytia hemisphaericaexon
TCONS_00057315-exon-scaffold_288-1510915933:71902..72110TCONS_00057315-exon-scaffold_288-1510915933:71902..72110Clytia hemisphaericaexon
TCONS_00057315-exon-scaffold_288-1575043694:71902..72110TCONS_00057315-exon-scaffold_288-1575043694:71902..72110Clytia hemisphaericaexon
TCONS_00057315-exon-scaffold_288-1491911889:72504..72794TCONS_00057315-exon-scaffold_288-1491911889:72504..72794Clytia hemisphaericaexon
TCONS_00057315-exon-scaffold_288-1510915933:72504..72794TCONS_00057315-exon-scaffold_288-1510915933:72504..72794Clytia hemisphaericaexon
TCONS_00057315-exon-scaffold_288-1575043694:72504..72794TCONS_00057315-exon-scaffold_288-1575043694:72504..72794Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:66772..72794 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.250726	0.122249	0.179037	0.547324	0	0	21.7224	23.8698	12.866	8.53589	7.55157	16.0474	18.4987	19.4495	35.1124	32.1776	12.5551	6.84143	43.6073	36.2966	15.3706	13.9096	15.9703	15.6564	3.31977	1.89163	4.67023	7.37247	43.4882	34.8687
Blast
[Close]
BLAST of TCONS_00057315 vs. Swiss-Prot (Human)
Match: BODG (Gamma-butyrobetaine dioxygenase OS=Homo sapiens GN=BBOX1 PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 1.566e-66
Identity = 138/394 (35.03%), Postives = 209/394 (53.05%), Query Frame = 2 
Query:  176 LAKSISRIEDDKSTRLLKVQWENGKENLYPYLFLRDHCQCPECFHPFTKSRKLDTVAAVDLGITIDDFAYDASDDVVEVTWPDGHQSRFTAKWLKSRFLSRKGEQINDRTGLDSVQRVSWTSMEIRENTPFVDFHEI-ESDEKALKGHLENLLRYGLSIVRNA---PLELSVLQKMADLMCLSIVRHTNYGPFFTVESKPSPSNLAYTGSALPMHTDLPFYDYQPGVQLLHCIRQSSGSESDGASLLVDAMKVVEDLKGNSPEDYHLLTTTNFRFNDEGTDLYGEFDLQFERPTIGLDKNGKFVHMAYNNVVRDFI-NAPAENIQRIYEAYYKLSAMLRDKHYQFQYKMAPGDMLVFDNKRLMHGRTAFDP-TTADRMLNGCYLDWDDIRSTWR 1339
            +A +I + E      L+++ W + +E+LYP ++LRD+C C +C+    K+RKL  V A+D+ I I    +D     V +TWPD H S F A WLK R  S++      R       +   + +++    P +DF ++   DE A K  L  L + G+  +  A   P E+S L K    + L+   HT     + V+ K   +N+AYT   L  HTD P   + PGVQLLHCI+Q+    + G S +VD   V + LK N+P+ + +L++T   F D G D Y +F +Q +   I LD  G+ V + +NN  RD I + P E +Q  Y A  +   ++  K  +F +KM PGD++ FDN RL+HGR +++  T   R L G Y DWD + S  R
Sbjct:    1 MACTIQKAEALDGAHLMQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKL-LVEALDVNIGIKGLIFDRKK--VYITWPDEHYSEFQADWLKKRCFSKQARAKLQRELFFPECQYWGSELQL----PTLDFEDVLRYDEHAYKW-LSTLKKVGIVRLTGASDKPGEVSKLGKRMGFLYLTFYGHT-----WQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQTV---TGGDSEIVDGFNVCQKLKKNNPQAFQILSSTFVDFTDIGVD-YCDFSVQSKHKIIELDDKGQVVRINFNNATRDTIFDVPVERVQPFYAALKEFVDLMNSKESKFTFKMNPGDVITFDNWRLLHGRRSYEAGTEISRHLEGAYADWDVVMSRLR 377
The following BLAST results are available for this feature:
BLAST of TCONS_00057315 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BODG1.566e-6635.03Gamma-butyrobetaine dioxygenase OS=Homo sapiens GN... [more]
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