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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057314 ID=TCONS_00057314|Name=TCONS_00057314|organism=Clytia hemisphaerica|type=transcript|length=2154bp
AAAAACTGTCCGTATGGGAATATACATTTGCTGAAcactgtttttcttct
tttttttttaaacagagATTGATGGTtttgtaaaagtttttgaaCTTCGA
AAGAAATatcagaaatttgaaaaaaaaaaggaaaatttttaaaattttgc
tatCAGAGAAAATATATATTAATCACAAAAGAGGAATTTTAGGATCAAAT
CAGGGATGATTTCGCttcttttgtttacatttttgatcTGCATTAATGCT
TTGATTCTACCGGGTACCAAATACTGCGGCATAGGCGAAGACGAGGACAT
GTCTGAATTCGGGCGTTACGAACATACGGATTACTGTTGTCAACAACATG
ACCTTTGTCCCCTGTCAATCAAGAAGTTCGGGTGGCGTTTCGGTATTATG
AATTGGCGCCCTTACACCCTCTCGTCTTGCGATTGCAACCAGAGATTTTT
AAGATGTCTACAAGATGTTGATTCTCCGGTTTCTTCATTTGTGGAACGGA
TCTTTTTCAAAGTATTGAAAGTACCCTGTATCGTAAAACTTGAAGAGAGG
AAAGGATATAAAGTGAAGAATTCGTTATTTGGGAAATAActtgtttgaaa
ttttgtaagACTGTGTGTATGATACTTCGTGGTAATTATAGAAAAGTTTT
CTGGTGAAAATATAATTGACTTGGGGAGTTTTAATTTGAATTGGTCATTA
TCTAGGAATACAGAGGAGGAAAAGCTAAAAAGAAACTACAAAtataattt
tgaatattttagagatgaatatattatttaaaaaaaaaaattaattaaga
gATTTAAAATTATATGTTtgttagaaaaataatttatgctACCAAgaata
ttttatcttttgattGTACATCCTTAGCCCGTACGCGTTCCATCAAATAC
TTATCACGGCTAGCGTCCCAGCGTTTAGTGTTAGATTTAAAAGCACTTTC
ATTTCCATTTTTATGTTGTTTGGAATTCCACGTGGTCAAATGATAACGGC
CCGGGCCGACCGTGTTACCACCTGAGAACAAGCGACTATCGTTACGCGCG
GCCGATGAACCGAAGGGCGGGTGTTTTGAATTAGTCGTCGTCTTCTTTAT
CTGTTTATTCAAATCATATGTACCAGGCCCCGGTTCATCAAACTTGCGCG
GCCATTGCGATAAGGTTTTACAGTAAATACGATCAGATGGCACATCCGGT
GCGCGATTGACTTTCCCGAATTTGCCATGACGTTTTTTATGTTCACTGTT
AAAATCATCAAGAAATGATTTCACTTCGTATTGGCCTGGCCCTAAATCAG
CTCGATTAGGTGCTGCCAAATGACCAACAGCGATTGGTTTATTACGATCA
CCTGTGAACAGATCATATGGTCCACGTTTGCTTATGACGCGTTCGTTCAA
CTCATCGATAAAGCTTTTAGTATTGTACTGTCCGGGACATAAGGCGGATC
CGACATCTGGTAATTGTCGTTTTCCAGATGCTCTTGAATCTAACATACCG
ATGGTGCTTgctgattttaattgtttttcctCCATCAAAGCATGCGGTAT
ACCGCCTTTTCCGTATGTTCCAGGGCCCGGTACATCCTTAGCAACGGTTC
TAAAACGTTCGGCACGTGTTTGACAAATACCAAGTTTGCTGGCTGGTTTT
TTAATTAAACCATCAAAAGCGTCAGGTAGGTCATAGGTTCCAGGACCAAG
TTGACatttttgtaattgttttttttcccATTCTTCCCTATAAAGTAAGT
GAGGAATTTTAGCCTCTTGGCTGGTTTCATAAGCACGCCTCCAGCCTGTG
TCCGCTGATGAAGATACATCATTCTTTTTATCAAAGCATCCGTTATCAAT
ATTGTAGGTTCCTGGACCCAATTTCCGACTCATCGGCGACATAGATTTTT
TATCGTAACATACTTGAGTTAACGTGCCAGGTGGTCTTCTTTTGGGATGT
ATACCAGCGACTTCAAAACGTTGTTTTTGCGTACCAAAAGGAGCACCATC
GTATTTTTTGCTGTCCATGATAGATAATCTGCTTCTGtttttattatgtt
tttcttttaagtacgatttaaatatttgttttgaataatctaaagaaaaa
aatttatatttgacgtcaatttcaaTCTTGAGAAGAGAGAAAGATGATTC
AAAA Run BLAST on NCBI transcript from alignment at scaffold_288:49757..52371+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057314 ID=TCONS_00057314|Name=TCONS_00057314|organism=Clytia hemisphaerica|type=transcript|length=2615bp|location=Sequence derived from alignment at scaffold_288:49757..52371+ (Clytia hemisphaerica)
AAAAACTGTCCGTATGGGAATATACATTTGCTGAAcactgtttttcttct
tttttttttaaacagagATTGATGGTtttgtaaaagtttttgaaCTTCGA
AAGAAATatcagaaatttgaaaaaaaaaaggaaaatttttaaaattttgc
tatCAGAGAAAATATATATTAATCACAAAAGAGGAATTTTAGGATCAAAT
CAGGGATGATTTCGCttcttttgtttacatttttgatcTGCATTAATGCT
TTGATTCTACCGGGTAAGTTTTACATGTTTCTTggtattaattatttttg
attgttttattaCACAACCCTGTATCACGGATCCGGTGGGACCCGCACCC
CATTGGAAAATTtatgccaaaattgaaaaaatcattttcagttggaaaaa
tactaatttagtcccaatgggaaattgactttttttgtaaaagatccACC
CCACTGTATTTTTTTAGCTTCCTCTCCGGGTAATCGCGGGTATCGCAGGT
ATCAGACCAATGGCCTcgtccaaaattttgaagattctgCGCTTGACCAA
AATAATGGAAGTCGTATAAATCAACGCGTCAGCCCTGATGATTACCTACC
ATATATTCATCATTACTGTAAAAATCATCCCCTTTTTTCTACAGGTACCA
AATACTGCGGCATAGGCGAAGACGAGGACATGTCTGAATTCGGGCGTTAC
GAACATACGGATTACTGTTGTCAACAACATGACCTTTGTCCCCTGTCAAT
CAAGAAGTTCGGGTGGCGTTTCGGTATTATGAATTGGCGCCCTTACACCC
TCTCGTCTTGCGATTGCAACCAGAGATTTTTAAGATGTCTACAAGATGTT
GATTCTCCGGTTTCTTCATTTGTGGAACGGATCTTTTTCAAAGTATTGAA
AGTACCCTGTATCGTAAAACTTGAAGAGAGGAAAGGATATAAAGTGAAGA
ATTCGTTATTTGGGAAATAActtgtttgaaattttgtaagACTGTGTGTA
TGATACTTCGTGGTAATTATAGAAAAGTTTTCTGGTGAAAATATAATTGA
CTTGGGGAGTTTTAATTTGAATTGGTCATTATCTAGGAATACAGAGGAGG
AAAAGCTAAAAAGAAACTACAAAtataattttgaatattttagagatgaa
tatattatttaaaaaaaaaaattaattaagagATTTAAAATTATATGTTt
gttagaaaaataatttatgctACCAAgaatattttatcttttgattGTAC
ATCCTTAGCCCGTACGCGTTCCATCAAATACTTATCACGGCTAGCGTCCC
AGCGTTTAGTGTTAGATTTAAAAGCACTTTCATTTCCATTTTTATGTTGT
TTGGAATTCCACGTGGTCAAATGATAACGGCCCGGGCCGACCGTGTTACC
ACCTGAGAACAAGCGACTATCGTTACGCGCGGCCGATGAACCGAAGGGCG
GGTGTTTTGAATTAGTCGTCGTCTTCTTTATCTGTTTATTCAAATCATAT
GTACCAGGCCCCGGTTCATCAAACTTGCGCGGCCATTGTGATAAGGTTTT
ACAGTAAATACGATCTGATGGCACATCCGGTGCGCNGGCCCCGGTTCATC
AAACTTGCGCGGCCATTGCGATAAGGTTTTACAGTAAATACGATCAGATG
GCACATCCGGTGCGCGATTGACTTTCCCGAATTTGCCATGACGTTTTTTA
TGTTCACTGTTAAAATCATCAAGAAATGATTTCACTTCGTATTGGCCTGG
CCCTAAATCAGCTCGATTAGGTGCTGCCAAATGACCAACAGCGATTGGTT
TATTACGATCACCTGTGAACAGATCATATGGTCCACGTTTGCTTATGACG
CGTTCGTTCAACTCATCGATAAAGCTTTTAGTATTGTACTGTCCGGGACA
TAAGGCGGATCCGACATCTGGTAATTGTCGTTTTCCAGATGCTCTTGAAT
CTAACATACCGATGGTGCTTgctgattttaattgtttttcctCCATCAAA
GCATGCGGTATACCGCCTTTTCCGTATGTTCCAGGGCCCGGTACATCCTT
AGCAACGGTTCTAAAACGTTCGGCACGTGTTTGACAAATACCAAGTTTGC
TGGCTGGTTTTTTAATTAAACCATCAAAAGCGTCAGGTAGGTCATAGGTT
CCAGGACCAAGTTGACatttttgtaattgttttttttcccATTCTTCCCT
ATAAAGTAAGTGAGGAATTTTAGCCTCTTGGCTGGTTTCATAAGCACGCC
TCCAGCCTGTGTCCGCTGATGAAGATACATCATTCTTTTTATCAAAGCAT
CCGTTATCAATATTGTAGGTTCCTGGACCCAATTTCCGACTCATCGGCGA
CATAGATTTTTTATCGTAACATACTTGAGTTAACGTGCCAGGTGGTCTTC
TTTTGGGATGTATACCAGCGACTTCAAAACGTTGTTTTTGCGTACCAAAA
GGAGCACCATCGTATTTTTTGCTGTCCATGATAGATAATCTGCTTCTGtt
tttattatgtttttcttttaagtacgatttaaatatttgttttgaataat
ctaaagaaaaaaatttatatttgacgtcaatttcaaTCTTGAGAAGAGAG
AAAGATGATTCAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057314-exon-scaffold_288-1491911889:49757..50019 | TCONS_00057314-exon-scaffold_288-1491911889:49757..50019 | Clytia hemisphaerica | exon |
| TCONS_00057314-exon-scaffold_288-1510915933:49757..50019 | TCONS_00057314-exon-scaffold_288-1510915933:49757..50019 | Clytia hemisphaerica | exon |
| TCONS_00057314-exon-scaffold_288-1575043694:49757..50019 | TCONS_00057314-exon-scaffold_288-1575043694:49757..50019 | Clytia hemisphaerica | exon |
| TCONS_00057314-exon-scaffold_288-1491911889:50401..51263 | TCONS_00057314-exon-scaffold_288-1491911889:50401..51263 | Clytia hemisphaerica | exon |
| TCONS_00057314-exon-scaffold_288-1510915933:50401..51263 | TCONS_00057314-exon-scaffold_288-1510915933:50401..51263 | Clytia hemisphaerica | exon |
| TCONS_00057314-exon-scaffold_288-1575043694:50401..51263 | TCONS_00057314-exon-scaffold_288-1575043694:50401..51263 | Clytia hemisphaerica | exon |
| TCONS_00057314-exon-scaffold_288-1491911889:51344..52371 | TCONS_00057314-exon-scaffold_288-1491911889:51344..52371 | Clytia hemisphaerica | exon |
| TCONS_00057314-exon-scaffold_288-1510915933:51344..52371 | TCONS_00057314-exon-scaffold_288-1510915933:51344..52371 | Clytia hemisphaerica | exon |
| TCONS_00057314-exon-scaffold_288-1575043694:51344..52371 | TCONS_00057314-exon-scaffold_288-1575043694:51344..52371 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_288 | supercontig | scaffold_288:49757..52371 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR010736 | SHIPPO-rpt |
Blast
BLAST of TCONS_00057314 vs. Swiss-Prot (Human)
Match: LEXM (Lymphocyte expansion molecule OS=Homo sapiens GN=LEXM PE=2 SV=3) HSP 1 Score: 220.32 bits (560), Expect = 1.162e-63 Identity = 137/394 (34.77%), Postives = 212/394 (53.81%), Query Frame = -2
Query: 882 SRLSIMDSKKYDGAPFGTQKQRFEVAGIHPKRRPPGTLTQVCYDKKSMSPMSRKLGPGTYNIDNGCFDKKNDVSSSADTGWRRAYETSQEAKIPHLLYREEWEKKQLQKCQLGPGTYDLPDAFDGLIKKPASKLGICQTRAERFRTVAKDV-PGPGTYGKGGIPHALMEEKQLKSASTIGMLDSRASGKRQLPDVGSALCPGQYNTKSFIDELNERVISKRGPYDLFTGDRNKPIAVGHLAAPNRADLGPGQ-YEVKSFLDDFNSEHKKRHGKFGKVNRAPDVPSDRIYCKTLSQWPRKFDEPGPGTYDLNKQIKKTTTNSKHPPF----GSSAARNDSRLFSGGNTVGPGRYHLTTW--NSKQHKNGNESAFKSNTKRW--DASRDKYLMERV 2033
+R+ +K + GAPFG Q RF+++ ++P + T T+ Y + + +S +GPGTY+ CF KK + DTGW +A E ++ ++PH Y+ ++K+L++ +LGPG+Y+L D + L +KP S G+ + RFR + + PGPG YG+ G P+ +EE + + G++ ++ P GS L PG Y KS ++ R + RGPYD F+GDR+KP+ GH + + P + KSF+++ NS H K+HG F K+ R P P++RIY LSQ PR GP ++ L ++ K N PPF S A+ + N VG GRY L TW +K + S F S +KR+ D +RD + ER+
Sbjct: 14 NRVGSTATKWFTGAPFGVQSHRFDISAVYPNWKKFSTFTEAPYSTRYSTQVSH-IGPGTYSSKETCFSKKK-LMKEVDTGWAKAQEATRLTQLPHFQYQAIMKEKRLKEQKLGPGSYNLKDFLEQLREKPCSTRGLLSSGEVRFRGLTGNYYPGPGNYGEKGNPYTKLEENAWNRSHSEGLMCRMSNKPHPRPYQGSGLGPGTYFFKSDLETYVARSVGTRGPYDTFSGDRSKPLPYGHYSMQKKK---PRELMNFKSFVEELNSHHNKKHGVFSKLPRNPKTPTERIYWANLSQCPRTLATSGP-SFWLPQEKKCKPVN--QPPFLLTSKGSGAKACQMIMGSWNPVGVGRY-LNTWLMETKDRRQRYRSLFLSGSKRYLSDLARDMLMQERI 398
The following BLAST results are available for this feature:
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