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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057312 ID=TCONS_00057312|Name=TCONS_00057312|organism=Clytia hemisphaerica|type=transcript|length=930bp
TTGAGTGGAGGAATTCAATGTCTTTGTGTAGAAATCTATGCTCTTGAATA
CTGAGCACATCGATTTTGAATTTGGAAAAACACGAAAGAAGCTCTTGTTT
TCTACTAACAAGAGATAGAGAGCACACGTTGAAAGTGCTAAAAATGGCTG
GATGTTTGCAAACTAGTAGTCTTTGTGTTTTAGGTTTTGTTACAGACTCA
ATCCTATCACCGTCAACTCTCTCTGATGAGTTTGGAGAAGACGGTTCATT
GGTTTCGCGGGAAACAAGGTTTAAGTTTGAAACTGAGAAAGCAAGGGCTT
TAACCCTGGTGCTGTTTAAAGAGTTATTCATGGtatttctttcgatagct
aAATGTTTCTAATGCTCCGCGCCACTGGATACATCATAGGGAGAATGACA
GTAAATACTGTCTAAAGAGGTCAACCACCCCATGAGGCAAAAATAAAACA
CTGCAAGAAGCCAACCTATGCAGAGTGTGCAGTACCCAACTAACTTGGGC
AAAATCCCTTTAGCCTGGAGGCCAAACGGACAGATAGGAGAACCATACTA
ACGGTTTCTTGTTAAATGCTTCTACCACTATTCACTTTACCTGTAACAAA
GTGAGATTTAttggttttctccaggttttacAGTAATCCTTCTGTTTTGT
GGAACGAAATTTAATGTTAAAACTTGATAAAATACAGTATTTGCGTAATA
AAAGTGAATTCGCAGTTATATAgttaaaaaataagtttgtaTGTACAGGT
TGAAAAATACGGTTACTATTCACAGTCAAAAGTCTTAGTCAAATGAGGAG
CGTACTGACAATTTTCAACACCAAAGTGACTTGATGGAAAAAAGGGCATA
CTGTTAATCTGACTGAACTTTTGAAGATTGGCTCTGCAGGGCAAGGGCGC
CAGACTTCCAGAAGGAAGTCATCCTTGGGG Run BLAST on NCBI protein sequence of TCONS_00057312-protein >TCONS_00057312-protein ID=TCONS_00057312-protein|Name=TCONS_00057312-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
MNNSLNSTRVKALAFSVSNLNLVSRETNEPSSPNSSERVDGDRIESVTKP
KTQRLLVCKHPAIFSTFNVCSLSLVSRKQELLSCFSKFKIDVLSIQEHRF
LHKDIEFLHS Run BLAST on NCBI transcript from alignment at scaffold_287:27333..28262 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057312 ID=TCONS_00057312|Name=TCONS_00057312|organism=Clytia hemisphaerica|type=transcript|length=930bp|location=Sequence derived from alignment at scaffold_287:27333..28262 (Clytia hemisphaerica)
CCCCAAGGATGACTTCCTTCTGGAAGTCTGGCGCCCTTGCCCTGCAGAGC
CAATCTTCAAAAGTTCAGTCAGATTAACAGTATGCCCTTTTTTCCATCAA
GTCACTTTGGTGTTGAAAATTGTCAGTACGCTCCTCATTTGACTAAGACT
TTTGACTGTGAATAGTAACCGTATTTTTCAACCTGTACAtacaaacttat
tttttaacTATATAACTGCGAATTCACTTTTATTACGCAAATACTGTATT
TTATCAAGTTTTAACATTAAATTTCGTTCCACAAAACAGAAGGATTACTg
taaaacctggagaaaaccaaTAAATCTCACTTTGTTACAGGTAAAGTGAA
TAGTGGTAGAAGCATTTAACAAGAAACCGTTAGTATGGTTCTCCTATCTG
TCCGTTTGGCCTCCAGGCTAAAGGGATTTTGCCCAAGTTAGTTGGGTACT
GCACACTCTGCATAGGTTGGCTTCTTGCAGTGTTTTATTTTTGCCTCATG
GGGTGGTTGACCTCTTTAGACAGTATTTACTGTCATTCTCCCTATGATGT
ATCCAGTGGCGCGGAGCATTAGAAACATTtagctatcgaaagaaataCCA
TGAATAACTCTTTAAACAGCACCAGGGTTAAAGCCCTTGCTTTCTCAGTT
TCAAACTTAAACCTTGTTTCCCGCGAAACCAATGAACCGTCTTCTCCAAA
CTCATCAGAGAGAGTTGACGGTGATAGGATTGAGTCTGTAACAAAACCTA
AAACACAAAGACTACTAGTTTGCAAACATCCAGCCATTTTTAGCACTTTC
AACGTGTGCTCTCTATCTCTTGTTAGTAGAAAACAAGAGCTTCTTTCGTG
TTTTTCCAAATTCAAAATCGATGTGCTCAGTATTCAAGAGCATAGATTTC
TACACAAAGACATTGAATTCCTCCACTCAA Coding sequence (CDS) from alignment at scaffold_287:27333..28262 >TCONS_00057312 ID=TCONS_00057312|Name=TCONS_00057312|organism=Clytia hemisphaerica|type=CDS|length=330bp|location=Sequence derived from alignment at scaffold_287:27333..28262 (Clytia hemisphaerica)
ATGAATAACTCTTTAAACAGCACCAGGGTTAAAGCCCTTGCTTTCTCAGT
TTCAAACTTAAACCTTGTTTCCCGCGAAACCAATGAACCGTCTTCTCCAA
ACTCATCAGAGAGAGTTGACGGTGATAGGATTGAGTCTGTAACAAAACCT
AAAACACAAAGACTACTAGTTTGCAAACATCCAGCCATTTTTAGCACTTT
CAACGTGTGCTCTCTATCTCTTGTTAGTAGAAAACAAGAGCTTCTTTCGT
GTTTTTCCAAATTCAAAATCGATGTGCTCAGTATTCAAGAGCATAGATTT
CTACACAAAGACATTGAATTCCTCCACTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057312-exon-scaffold_287-1491911889:27333..28262 | TCONS_00057312-exon-scaffold_287-1491911889:27333..28262 | Clytia hemisphaerica | exon |
| TCONS_00057312-exon-scaffold_287-1510915933:27333..28262 | TCONS_00057312-exon-scaffold_287-1510915933:27333..28262 | Clytia hemisphaerica | exon |
| TCONS_00057312-exon-scaffold_287-1575043694:27333..28262 | TCONS_00057312-exon-scaffold_287-1575043694:27333..28262 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_287 | supercontig | scaffold_287:27333..28262 . |
Blast
The following BLAST results are available for this feature:
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