TCONS_00057306 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057306
Unique NameTCONS_00057306
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length599

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057306 ID=TCONS_00057306|Name=TCONS_00057306|organism=Clytia hemisphaerica|type=transcript|length=599bp
TTTCGACCGCGTGGTCAAAAGATGATGTTGATGCAGACATTGGGAAAATA
ATATTACTAAAGTTTAATACTTAATAaactaaaatatttgtttcaTCTTT
TGTAGCACAACCAGACGATGATGTGATCGATGCAGCTGATCGTTGTGTAG
CTTTGACTGATGCTGGATGTTGGAAAGTTTACGCTTGTAGTGTGACATCC
GATACTATAACCATCGGTACTGATACTACAATCAATCCTTTTCTTACTAT
GTGTGAGTTTGATATCCGTGAGTCAAATCCAACCAAACATGAATTATTCA
CTTTGATTCAAGTTTTAAGAGCAAATGTCAATGAAATCACTAAAGATTGT
AAACGATGCAAAGGTGTTGAATAGAACTATAAAAGTTTTCTTTCCTAGCC
GGAATTAAAACGTCAAGTCAAAGTTCATCTAACGTCAAACGTTAAATGCA
CGTTGACATAACATATTTTTCCGGCTGGATTGAATATCGAGATTGCCGGA
TATTGACAACATTGGACTGACCTTGATTTAAGAAAAACGATATTTTGATT
ATGTTTACCTGAAACTTTATTTATATTGCATGTACGTATTTTGTAAGTG
Run BLAST on NCBI

transcript from alignment at scaffold_286:827661..828259

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057306 ID=TCONS_00057306|Name=TCONS_00057306|organism=Clytia hemisphaerica|type=transcript|length=599bp|location=Sequence derived from alignment at scaffold_286:827661..828259 (Clytia hemisphaerica)
CACTTACAAAATACGTACATGCAATATAAATAAAGTTTCAGGTAAACATA
ATCAAAATATCGTTTTTCTTAAATCAAGGTCAGTCCAATGTTGTCAATAT
CCGGCAATCTCGATATTCAATCCAGCCGGAAAAATATGTTATGTCAACGT
GCATTTAACGTTTGACGTTAGATGAACTTTGACTTGACGTTTTAATTCCG
GCTAGGAAAGAAAACTTTTATAGTTCTATTCAACACCTTTGCATCGTTTA
CAATCTTTAGTGATTTCATTGACATTTGCTCTTAAAACTTGAATCAAAGT
GAATAATTCATGTTTGGTTGGATTTGACTCACGGATATCAAACTCACACA
TAGTAAGAAAAGGATTGATTGTAGTATCAGTACCGATGGTTATAGTATCG
GATGTCACACTACAAGCGTAAACTTTCCAACATCCAGCATCAGTCAAAGC
TACACAACGATCAGCTGCATCGATCACATCATCGTCTGGTTGTGCTACAA
AAGAtgaaacaaatattttagttTATTAAGTATTAAACTTTAGTAATATT
ATTTTCCCAATGTCTGCATCAACATCATCTTTTGACCACGCGGTCGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036111XLOC_036111Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057306-exon-scaffold_286-1491911889:827661..828259TCONS_00057306-exon-scaffold_286-1491911889:827661..828259Clytia hemisphaericaexon
TCONS_00057306-exon-scaffold_286-1510915933:827661..828259TCONS_00057306-exon-scaffold_286-1510915933:827661..828259Clytia hemisphaericaexon
TCONS_00057306-exon-scaffold_286-1575043694:827661..828259TCONS_00057306-exon-scaffold_286-1575043694:827661..828259Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_286supercontigscaffold_286:827661..828259 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0296445	0.100769	0.245352	0.290821	1.25998	1.20604	0.696126	0.0969803	0.772848	0.308842	1.80996	5.83732	0.545335	0.315097	1.02731	1.40973	0	0.42991	3.06492	3.24945	0.133058	0	0	0	1.05795	0	0	0.185743
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057306 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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