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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057296 ID=TCONS_00057296|Name=TCONS_00057296|organism=Clytia hemisphaerica|type=transcript|length=2235bp
TGTATCATTTCCTTGCTGACTCCATGATGAATTTATGGTGGAACTTGTGT
TGATGCTATGAGACGATGTCGTGTTCTCAGATGTATTGAAACTAATGTTC
AATGACGTAGAATTGATTGTTGGATTCAGATTGTCGGATGCATTGAAATT
CTTCAATGATGTAGAATTTATTGTTGAATTCAGATATTGATTTGTGGAAA
CTTTTGTAGTGCTCCTTGATGGTGTTTGAGTGTGGAGATCGTCGTAGAAC
ATAGATGACAATGATGGCGACGATTGAAAATAAGATGATTGGGATGATAG
GAAGCGTACAGATCTTTGAATGTAATCGTTAAGGTTCGTGGTTGAATCAA
TTGTTTGAGGTGTGATTAATGGGCTGGATGGTTGGATGGGTGAGCTATCA
TCAGATGAAATGGGCTCCTTTTTGTCAGAACCGGCTACGTCAGCATCtgc
atcttcttcttcttccttctcCTCATTGTCTTTTTCTTCCTCTTCTTTGG
TATCTTTACTTTTGAATAAGGATCTTTGGAGATAATCGATTGTTGATCGC
TCTGTTGTTCGAATAGTGCTCTCAAATGTAGATTCAAGATTTATAGCAGT
AGATTTATCGCTTGTAATTACTTCGGTGGTTGATGAAAAGGACATTTTAC
AGACCGGATCTTTATCATTAGAACATGTTTCCAGATTGCATTGAGTGTTA
TATTTTGCCAGAGATTTAGTTTTATGGATTGCTAAGGCAGTTGTGCAACA
ACATATTGCCATATCATACATGTCAGTTTGTATTGTTACGTCTGCCGGTA
GACCATCAAATACATCCGAGCGTAACACTTCAATTAGGTGCAGGGATACG
GTTAATGTCTCTAGACTACCAAGGCCGATCAGGGTCTGTTGGGACAGGCA
CCTAAATCTGTTGCCATTCAACTGCAGACTCTCGAGTTCTCCAAGCATTT
GAAAAGATCCATGCTCAATATTGATAAGTGTCCTTTTCGTATTAAGATTT
GAAAGTGAGAGATGATTTAAATTCTCAAGTCCTTGAAAGGTATGTGGACT
TATGTGATCGATGTGATTGTTCAACAGAAAGAGTGAAGTCAAATTCCCCA
ACTCCTCGAAGCATCCATCATCGAGTCTTTCAATGTTATTGTTATGCAAA
TATAGTTCCTTCAAATATGGCAAATCGTAGAAATCATATTTTCTGATTCG
AGTAATCAGATTATCATTCAGTATAAGTTTCTCAGTTTCATTTGGTATAT
TACCCGGTACTGcagataaaaaattttgatgacaaaGTACATCTTTAAAG
TCATTATAACATTTGCATTCTTCGGGACAGATACTGCTTTTTCTTGGAGT
TGCTGGTCGAACAGGCTCTGGTTCTGAAGGAGTTGTTGTAATTGGTGTTG
TTTGAACTACAGCATCTGTGGGTTTGGAAATGTCGGATTCTGGATTGTCC
GGGATAGACGTTGTTGGTGGTGTAAGTTTCCTAAGACACGTGGTGTCATA
TGGACGGTTACAGATACCTTCAGCATTATAACAGTCCTTGATGGTACATT
TAACCGAAGGCTTAATCATCAATGACTCAATTGCAGCTGCAGTCGAACAG
CAACATAAATAGCTACGACCTAAATGTACATCAACATCCTTTGAAAAATG
TGAGAACGCTAGGCTgttgattttattgatttgattcaatGAGATTGTTA
GATACTTCAGTTTTGATAACCCGGAGAAAAGATTATTGGATATGAAATGG
AAGTAATTTTTGGTTAAGAAAAGATCTTCCAAAGATGGTGTTTGAGTAAA
AACAAAATCGTCAATACATGGCACAATGTGTGAATGAATTTCAGATAACC
AGAGACTTTTTAATCTCCATAATCCAACGAAGGTGTATTGAGTGATATAT
GATAGATAATTCTTACTCAGATTCAGTTCTATCAAATTATGCAGGTCTGT
GAATGCATACTCATCTATATGAGCTATATGGTTTTTGTGTAGGTACAATT
TACGTAGATTGTTGAGTCCAGCCAAGTCAGCTCTGGAGATTTGCTGTATA
TTGTTATTGTTTAGATATAACTCTTCGGTGTCCCTTGGGATGTCTTTTGG
AATGGAATTGAGTGGCTTTTCTTTCCCAATACAAGTGACTGTCTTTGTGG
TTTGATCACAAGTACATTCTATAGGACATGAAAAGGATGTGATCACATGA
TGTCCAAAGATGATGGTGAAGATGATCAATGTCTT Run BLAST on NCBI protein sequence of TCONS_00057296-protein >TCONS_00057296-protein ID=TCONS_00057296-protein|Name=TCONS_00057296-protein|organism=Clytia hemisphaerica|type=polypeptide|length=745bp
KTLIIFTIIFGHHVITSFSCPIECTCDQTTKTVTCIGKEKPLNSIPKDIP
RDTEELYLNNNNIQQISRADLAGLNNLRKLYLHKNHIAHIDEYAFTDLHN
LIELNLSKNYLSYITQYTFVGLWRLKSLWLSEIHSHIVPCIDDFVFTQTP
SLEDLFLTKNYFHFISNNLFSGLSKLKYLTISLNQINKINSLAFSHFSKD
VDVHLGRSYLCCCSTAAAIESLMIKPSVKCTIKDCYNAEGICNRPYDTTC
LRKLTPPTTSIPDNPESDISKPTDAVVQTTPITTTPSEPEPVRPATPRKS
SICPEECKCYNDFKDVLCHQNFLSAVPGNIPNETEKLILNDNLITRIRKY
DFYDLPYLKELYLHNNNIERLDDGCFEELGNLTSLFLLNNHIDHISPHTF
QGLENLNHLSLSNLNTKRTLINIEHGSFQMLGELESLQLNGNRFRCLSQQ
TLIGLGSLETLTVSLHLIEVLRSDVFDGLPADVTIQTDMYDMAICCCTTA
LAIHKTKSLAKYNTQCNLETCSNDKDPVCKMSFSSTTEVITSDKSTAINL
ESTFESTIRTTERSTIDYLQRSLFKSKDTKEEEEKDNEEKEEEEDADADV
AGSDKKEPISSDDSSPIQPSSPLITPQTIDSTTNLNDYIQRSVRFLSSQS
SYFQSSPSLSSMFYDDLHTQTPSRSTTKVSTNQYLNSTINSTSLKNFNAS
DNLNPTINSTSLNISFNTSENTTSSHSINTSSTINSSWSQQGNDT Run BLAST on NCBI transcript from alignment at scaffold_286:477846..480080 Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057296 ID=TCONS_00057296|Name=TCONS_00057296|organism=Clytia hemisphaerica|type=transcript|length=2235bp|location=Sequence derived from alignment at scaffold_286:477846..480080 (Clytia hemisphaerica)
AAGACATTGATCATCTTCACCATCATCTTTGGACATCATGTGATCACATC
CTTTTCATGTCCTATAGAATGTACTTGTGATCAAACCACAAAGACAGTCA
CTTGTATTGGGAAAGAAAAGCCACTCAATTCCATTCCAAAAGACATCCCA
AGGGACACCGAAGAGTTATATCTAAACAATAACAATATACAGCAAATCTC
CAGAGCTGACTTGGCTGGACTCAACAATCTACGTAAATTGTACCTACACA
AAAACCATATAGCTCATATAGATGAGTATGCATTCACAGACCTGCATAAT
TTGATAGAACTGAATCTGAGTAAGAATTATCTATCATATATCACTCAATA
CACCTTCGTTGGATTATGGAGATTAAAAAGTCTCTGGTTATCTGAAATTC
ATTCACACATTGTGCCATGTATTGACGATTTTGTTTTTACTCAAACACCA
TCTTTGGAAGATCTTTTCTTAACCAAAAATTACTTCCATTTCATATCCAA
TAATCTTTTCTCCGGGTTATCAAAACTGAAGTATCTAACAATCTCattga
atcaaatcaataaaatcaacAGCCTAGCGTTCTCACATTTTTCAAAGGAT
GTTGATGTACATTTAGGTCGTAGCTATTTATGTTGCTGTTCGACTGCAGC
TGCAATTGAGTCATTGATGATTAAGCCTTCGGTTAAATGTACCATCAAGG
ACTGTTATAATGCTGAAGGTATCTGTAACCGTCCATATGACACCACGTGT
CTTAGGAAACTTACACCACCAACAACGTCTATCCCGGACAATCCAGAATC
CGACATTTCCAAACCCACAGATGCTGTAGTTCAAACAACACCAATTACAA
CAACTCCTTCAGAACCAGAGCCTGTTCGACCAGCAACTCCAAGAAAAAGC
AGTATCTGTCCCGAAGAATGCAAATGTTATAATGACTTTAAAGATGTACt
ttgtcatcaaaattttttatctgCAGTACCGGGTAATATACCAAATGAAA
CTGAGAAACTTATACTGAATGATAATCTGATTACTCGAATCAGAAAATAT
GATTTCTACGATTTGCCATATTTGAAGGAACTATATTTGCATAACAATAA
CATTGAAAGACTCGATGATGGATGCTTCGAGGAGTTGGGGAATTTGACTT
CACTCTTTCTGTTGAACAATCACATCGATCACATAAGTCCACATACCTTT
CAAGGACTTGAGAATTTAAATCATCTCTCACTTTCAAATCTTAATACGAA
AAGGACACTTATCAATATTGAGCATGGATCTTTTCAAATGCTTGGAGAAC
TCGAGAGTCTGCAGTTGAATGGCAACAGATTTAGGTGCCTGTCCCAACAG
ACCCTGATCGGCCTTGGTAGTCTAGAGACATTAACCGTATCCCTGCACCT
AATTGAAGTGTTACGCTCGGATGTATTTGATGGTCTACCGGCAGACGTAA
CAATACAAACTGACATGTATGATATGGCAATATGTTGTTGCACAACTGCC
TTAGCAATCCATAAAACTAAATCTCTGGCAAAATATAACACTCAATGCAA
TCTGGAAACATGTTCTAATGATAAAGATCCGGTCTGTAAAATGTCCTTTT
CATCAACCACCGAAGTAATTACAAGCGATAAATCTACTGCTATAAATCTT
GAATCTACATTTGAGAGCACTATTCGAACAACAGAGCGATCAACAATCGA
TTATCTCCAAAGATCCTTATTCAAAAGTAAAGATACCAAAGAAGAGGAAG
AAAAAGACAATGAGgagaaggaagaagaagaagatgcaGATGCTGACGTA
GCCGGTTCTGACAAAAAGGAGCCCATTTCATCTGATGATAGCTCACCCAT
CCAACCATCCAGCCCATTAATCACACCTCAAACAATTGATTCAACCACGA
ACCTTAACGATTACATTCAAAGATCTGTACGCTTCCTATCATCCCAATCA
TCTTATTTTCAATCGTCGCCATCATTGTCATCTATGTTCTACGACGATCT
CCACACTCAAACACCATCAAGGAGCACTACAAAAGTTTCCACAAATCAAT
ATCTGAATTCAACAATAAATTCTACATCATTGAAGAATTTCAATGCATCC
GACAATCTGAATCCAACAATCAATTCTACGTCATTGAACATTAGTTTCAA
TACATCTGAGAACACGACATCGTCTCATAGCATCAACACAAGTTCCACCA
TAAATTCATCATGGAGTCAGCAAGGAAATGATACA Coding sequence (CDS) from alignment at scaffold_286:477846..480080 >TCONS_00057296 ID=TCONS_00057296|Name=TCONS_00057296|organism=Clytia hemisphaerica|type=CDS|length=2235bp|location=Sequence derived from alignment at scaffold_286:477846..480080 (Clytia hemisphaerica)
AAGACATTGATCATCTTCACCATCATCTTTGGACATCATGTGATCACATC
CTTTTCATGTCCTATAGAATGTACTTGTGATCAAACCACAAAGACAGTCA
CTTGTATTGGGAAAGAAAAGCCACTCAATTCCATTCCAAAAGACATCCCA
AGGGACACCGAAGAGTTATATCTAAACAATAACAATATACAGCAAATCTC
CAGAGCTGACTTGGCTGGACTCAACAATCTACGTAAATTGTACCTACACA
AAAACCATATAGCTCATATAGATGAGTATGCATTCACAGACCTGCATAAT
TTGATAGAACTGAATCTGAGTAAGAATTATCTATCATATATCACTCAATA
CACCTTCGTTGGATTATGGAGATTAAAAAGTCTCTGGTTATCTGAAATTC
ATTCACACATTGTGCCATGTATTGACGATTTTGTTTTTACTCAAACACCA
TCTTTGGAAGATCTTTTCTTAACCAAAAATTACTTCCATTTCATATCCAA
TAATCTTTTCTCCGGGTTATCAAAACTGAAGTATCTAACAATCTCattga
atcaaatcaataaaatcaacAGCCTAGCGTTCTCACATTTTTCAAAGGAT
GTTGATGTACATTTAGGTCGTAGCTATTTATGTTGCTGTTCGACTGCAGC
TGCAATTGAGTCATTGATGATTAAGCCTTCGGTTAAATGTACCATCAAGG
ACTGTTATAATGCTGAAGGTATCTGTAACCGTCCATATGACACCACGTGT
CTTAGGAAACTTACACCACCAACAACGTCTATCCCGGACAATCCAGAATC
CGACATTTCCAAACCCACAGATGCTGTAGTTCAAACAACACCAATTACAA
CAACTCCTTCAGAACCAGAGCCTGTTCGACCAGCAACTCCAAGAAAAAGC
AGTATCTGTCCCGAAGAATGCAAATGTTATAATGACTTTAAAGATGTACt
ttgtcatcaaaattttttatctgCAGTACCGGGTAATATACCAAATGAAA
CTGAGAAACTTATACTGAATGATAATCTGATTACTCGAATCAGAAAATAT
GATTTCTACGATTTGCCATATTTGAAGGAACTATATTTGCATAACAATAA
CATTGAAAGACTCGATGATGGATGCTTCGAGGAGTTGGGGAATTTGACTT
CACTCTTTCTGTTGAACAATCACATCGATCACATAAGTCCACATACCTTT
CAAGGACTTGAGAATTTAAATCATCTCTCACTTTCAAATCTTAATACGAA
AAGGACACTTATCAATATTGAGCATGGATCTTTTCAAATGCTTGGAGAAC
TCGAGAGTCTGCAGTTGAATGGCAACAGATTTAGGTGCCTGTCCCAACAG
ACCCTGATCGGCCTTGGTAGTCTAGAGACATTAACCGTATCCCTGCACCT
AATTGAAGTGTTACGCTCGGATGTATTTGATGGTCTACCGGCAGACGTAA
CAATACAAACTGACATGTATGATATGGCAATATGTTGTTGCACAACTGCC
TTAGCAATCCATAAAACTAAATCTCTGGCAAAATATAACACTCAATGCAA
TCTGGAAACATGTTCTAATGATAAAGATCCGGTCTGTAAAATGTCCTTTT
CATCAACCACCGAAGTAATTACAAGCGATAAATCTACTGCTATAAATCTT
GAATCTACATTTGAGAGCACTATTCGAACAACAGAGCGATCAACAATCGA
TTATCTCCAAAGATCCTTATTCAAAAGTAAAGATACCAAAGAAGAGGAAG
AAAAAGACAATGAGgagaaggaagaagaagaagatgcaGATGCTGACGTA
GCCGGTTCTGACAAAAAGGAGCCCATTTCATCTGATGATAGCTCACCCAT
CCAACCATCCAGCCCATTAATCACACCTCAAACAATTGATTCAACCACGA
ACCTTAACGATTACATTCAAAGATCTGTACGCTTCCTATCATCCCAATCA
TCTTATTTTCAATCGTCGCCATCATTGTCATCTATGTTCTACGACGATCT
CCACACTCAAACACCATCAAGGAGCACTACAAAAGTTTCCACAAATCAAT
ATCTGAATTCAACAATAAATTCTACATCATTGAAGAATTTCAATGCATCC
GACAATCTGAATCCAACAATCAATTCTACGTCATTGAACATTAGTTTCAA
TACATCTGAGAACACGACATCGTCTCATAGCATCAACACAAGTTCCACCA
TAAATTCATCATGGAGTCAGCAAGGAAATGATACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00057296-exon-scaffold_286-1491911889:477846..480080 | TCONS_00057296-exon-scaffold_286-1491911889:477846..480080 | Clytia hemisphaerica | exon |
| TCONS_00057296-exon-scaffold_286-1510915933:477846..480080 | TCONS_00057296-exon-scaffold_286-1510915933:477846..480080 | Clytia hemisphaerica | exon |
| TCONS_00057296-exon-scaffold_286-1575043694:477846..480080 | TCONS_00057296-exon-scaffold_286-1575043694:477846..480080 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_286 | supercontig | scaffold_286:477846..480080 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00057296 vs. Swiss-Prot (Human)
Match: SLIT1 (Slit homolog 1 protein OS=Homo sapiens GN=SLIT1 PE=2 SV=4) HSP 1 Score: 140.198 bits (352), Expect = 5.907e-34 Identity = 133/451 (29.49%), Postives = 190/451 (42.13%), Query Frame = -1
Query: 844 ITSFSCPIECTCDQTTKTVTCIGKEKPLNSIPKDIPRDTEELYLNNNNIQQISRADLAGLNNLRKLYLHKNHIAHIDEYAFTDLHNLIELNLSKNYLSYITQYTFVGLWRLKSLWLSEIHSHIVPCIDDFVFTQTPSLEDLFLTKNYFHFISNNLFSGLSKLKYLTISLNQINKINSLAFSHFSKDVDVHLGRSYLCC-CSTAAAIESLMIKPSVKCTIKDCYNAEGICNRPYDTTCLRKLTPPTTSIPDNPESDISKPTDAVVQXXXXXXXXXXXXPVRPATPRKSSICPEECKCYNDFKDVLCHQNFLSAVPGNIPNETEKLILNDNLITRIRKYDFYDLPYLKELYLHNNNIERLDDGCFEELGNLTSLFLLNNHIDHISPHTFQGLEXXXXXXXXXXNTKRTLINIEHGSFQMLGELESLQLNGNRFRCLSQQTLIGLGSLETLTVS 2193
+ + +CP CTC T TV C G L +IPK+IPR+TE L LN NNI +I + D AGL LR L L +N I ++ AF D+ L L L++N L + + F L L LSE +P F L++L L KN I F L L+ LT++ N I I +F+H K L ++L C C A + L +P++ + C+ P LR L A VQ + + + P S CP C C N D C L+A+P N+P ++ L N I I F L+ + L NN I + F+ L +L SL L N I + F GL L + I +FQ L L L L N+ + L++ T L +++TL ++
Sbjct: 29 LGASACPALCTC--TGTTVDCHGTG--LQAIPKNIPRNTERLELNGNNITRIHKNDFAGLKQLRVLQLMENQIGAVERGAFDDMKELERLRLNRNQLHMLPELLFQNNQALSRLDLSENAIQAIP---RKAFRGATDLKNLQLDKNQISCIEEGAFRALRGLEVLTLNNNNITTIPVSSFNHMPKLRTFRLHSNHLFCDCHLAWLSQWLRQRPTIGLFTQ--------CSGPAS---LRGL------------------NVAEVQKSEFSCSGQGEAGRVPTCTLSSGSCPAMCTCSNGIVD--CRGKGLTAIPANLPETMTEIRLELNGIKSIPPGAFSPYRKLRRIDLSNNQIAEIAPDAFQGLRSLNSLVLYGNKITDLPRGVFGGLY----TLQLLLLNANKINCIRPDAFQDLQNLSLLSLYDNKIQSLAKGTFTSLRAIQTLHLA 437 HSP 2 Score: 83.5741 bits (205), Expect = 2.489e-16 Identity = 58/181 (32.04%), Postives = 87/181 (48.07%), Query Frame = -1
Query: 796 SSICPEECKCYNDFKDVLCHQNFLSAVPGNIPNETEKLILNDNLITRIRKYDFYDLPYLKELYLHNNNIERLDDGCFEELGNLTSLFLLNNHIDHISPHTFQGLEXXXXXXXXXXNTKRTLINIEHGSFQMLGELESLQLNGNRFRCLSQQTLIGLGSLETLTVSLHLIEVLRSDVFDGLP 1338
+S CP C C D CH L A+P NIP TE+L LN N ITRI K DF L L+ L L N I ++ G F+++ L L L N + + FQ N ++ + I +F+ +L++LQL+ N+ C+ + L LE LT++ + I + F+ +P
Sbjct: 31 ASACPALCTCTGTTVD--CHGTGLQAIPKNIPRNTERLELNGNNITRIHKNDFAGLKQLRVLQLMENQIGAVERGAFDDMKELERLRLNRNQLHMLPELLFQ----NNQALSRLDLSENAIQAIPRKAFRGATDLKNLQLDKNQISCIEEGAFRALRGLEVLTLNNNNITTIPVSSFNHMP 205
The following BLAST results are available for this feature:
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