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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057292 ID=TCONS_00057292|Name=TCONS_00057292|organism=Clytia hemisphaerica|type=transcript|length=931bp
GCCAGCCATTCCATATCTTTAGTACCTCTTCCTTTAATGAAAGTCAATGT
AAAGCTACCTGCGTATTTAGTGACGAATGTTACTGAAATTCGATTCCAGC
TTTTTATAATACCACCTGCGGCGTTCCTCAATATGTGAAGATTGTATTTA
TGCACATATTTAAAACAGTTCGTTCTCATGTAGTAGATAAAACTTAAAtg
attttcaacgtttatccCATGGCTGGTAAATCGTGATGCATTACCCAAGG
AAGATAAGTTTTGGTATTTACCGGCCAAACTTTTTCGTACCCAATATTGC
TTACCAGTATCTATTGAAATGTAATTATCAGCTTTTTTGTTACTGTTTTT
AAAGGCGTTAAAAATGTTATGGAGAATCCAAAAGTGACGTAACGATTCGT
CAAAGTCAAACTCGGCGTCCCTGACGAACTTCATTTGATCTTTGCGATCA
CCGAACAAGATTTTCGGTTTGCCGTAACTGAAATGTCCTTCCATCTTGAT
ATTGTGGATAACCTGATTATAATCCGTTAAGCTAGCCATGTTGACTTCTT
GTTCGATATAACATACTTTTAAACCTTTTATACTTTTCATAAAGTTTGTA
TAAGCTTCTTGGTCGACAGCATTTGTTGAAACGTTTCGCTTCAAAAAGAA
TACTGCAATCGTCTCCCAGTTGTAGAACTCCAATAAAGCTAACCAAGCTT
CATGTGGTTTTCTCTGAAAAGGCTCTTCAATCCTCTGATTCTTTGCCCAG
AAATAATCAAGTCCATAATTCTTATTTAAAGATACGATTCTTAATGACTT
AAAGTCAGGTAGCATCATTGATATAAGTGTTTTCAGTGAACTTTCGTCTA
GATGAGTCAAAACGAGTATAATGTTAGATTCGTTTTGTGTATTCCGGTAT
AGCGGGTCAAAAATGAGCTCTAAGCTAGCTT Run BLAST on NCBI protein sequence of TCONS_00057292-protein >TCONS_00057292-protein ID=TCONS_00057292-protein|Name=TCONS_00057292-protein|organism=Clytia hemisphaerica|type=polypeptide|length=309bp
ASLELIFDPLYRNTQNESNIILVLTHLDESSLKTLISMMLPDFKSLRIVS
LNKNYGLDYFWAKNQRIEEPFQRKPHEAWLALLEFYNWETIAVFFLKRNV
STNAVDQEAYTNFMKSIKGLKVCYIEQEVNMASLTDYNQVIHNIKMEGHF
SYGKPKILFGDRKDQMKFVRDAEFDFDESLRHFWILHNIFNAFKNSNKKA
DNYISIDTGKQYWVRKSLAGKYQNLSSLGNASRFTSHGINVENHLSFIYY
MRTNCFKYVHKYNLHILRNAAGGIIKSWNRISVTFVTKYAGSFTLTFIKG
RGTKDMEWL Run BLAST on NCBI transcript from alignment at scaffold_286:373766..374696 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057292 ID=TCONS_00057292|Name=TCONS_00057292|organism=Clytia hemisphaerica|type=transcript|length=931bp|location=Sequence derived from alignment at scaffold_286:373766..374696 (Clytia hemisphaerica)
AAGCTAGCTTAGAGCTCATTTTTGACCCGCTATACCGGAATACACAAAAC
GAATCTAACATTATACTCGTTTTGACTCATCTAGACGAAAGTTCACTGAA
AACACTTATATCAATGATGCTACCTGACTTTAAGTCATTAAGAATCGTAT
CTTTAAATAAGAATTATGGACTTGATTATTTCTGGGCAAAGAATCAGAGG
ATTGAAGAGCCTTTTCAGAGAAAACCACATGAAGCTTGGTTAGCTTTATT
GGAGTTCTACAACTGGGAGACGATTGCAGTATTCTTTTTGAAGCGAAACG
TTTCAACAAATGCTGTCGACCAAGAAGCTTATACAAACTTTATGAAAAGT
ATAAAAGGTTTAAAAGTATGTTATATCGAACAAGAAGTCAACATGGCTAG
CTTAACGGATTATAATCAGGTTATCCACAATATCAAGATGGAAGGACATT
TCAGTTACGGCAAACCGAAAATCTTGTTCGGTGATCGCAAAGATCAAATG
AAGTTCGTCAGGGACGCCGAGTTTGACTTTGACGAATCGTTACGTCACTT
TTGGATTCTCCATAACATTTTTAACGCCTTTAAAAACAGTAACAAAAAAG
CTGATAATTACATTTCAATAGATACTGGTAAGCAATATTGGGTACGAAAA
AGTTTGGCCGGTAAATACCAAAACTTATCTTCCTTGGGTAATGCATCACG
ATTTACCAGCCATGggataaacgttgaaaatcaTTTAAGTTTTATCTACT
ACATGAGAACGAACTGTTTTAAATATGTGCATAAATACAATCTTCACATA
TTGAGGAACGCCGCAGGTGGTATTATAAAAAGCTGGAATCGAATTTCAGT
AACATTCGTCACTAAATACGCAGGTAGCTTTACATTGACTTTCATTAAAG
GAAGAGGTACTAAAGATATGGAATGGCTGGC Coding sequence (CDS) from alignment at scaffold_286:373766..374696 >TCONS_00057292 ID=TCONS_00057292|Name=TCONS_00057292|organism=Clytia hemisphaerica|type=CDS|length=927bp|location=Sequence derived from alignment at scaffold_286:373766..374696 (Clytia hemisphaerica)
GCTAGCTTAGAGCTCATTTTTGACCCGCTATACCGGAATACACAAAACGA
ATCTAACATTATACTCGTTTTGACTCATCTAGACGAAAGTTCACTGAAAA
CACTTATATCAATGATGCTACCTGACTTTAAGTCATTAAGAATCGTATCT
TTAAATAAGAATTATGGACTTGATTATTTCTGGGCAAAGAATCAGAGGAT
TGAAGAGCCTTTTCAGAGAAAACCACATGAAGCTTGGTTAGCTTTATTGG
AGTTCTACAACTGGGAGACGATTGCAGTATTCTTTTTGAAGCGAAACGTT
TCAACAAATGCTGTCGACCAAGAAGCTTATACAAACTTTATGAAAAGTAT
AAAAGGTTTAAAAGTATGTTATATCGAACAAGAAGTCAACATGGCTAGCT
TAACGGATTATAATCAGGTTATCCACAATATCAAGATGGAAGGACATTTC
AGTTACGGCAAACCGAAAATCTTGTTCGGTGATCGCAAAGATCAAATGAA
GTTCGTCAGGGACGCCGAGTTTGACTTTGACGAATCGTTACGTCACTTTT
GGATTCTCCATAACATTTTTAACGCCTTTAAAAACAGTAACAAAAAAGCT
GATAATTACATTTCAATAGATACTGGTAAGCAATATTGGGTACGAAAAAG
TTTGGCCGGTAAATACCAAAACTTATCTTCCTTGGGTAATGCATCACGAT
TTACCAGCCATGggataaacgttgaaaatcaTTTAAGTTTTATCTACTAC
ATGAGAACGAACTGTTTTAAATATGTGCATAAATACAATCTTCACATATT
GAGGAACGCCGCAGGTGGTATTATAAAAAGCTGGAATCGAATTTCAGTAA
CATTCGTCACTAAATACGCAGGTAGCTTTACATTGACTTTCATTAAAGGA
AGAGGTACTAAAGATATGGAATGGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057292-exon-scaffold_286-1491911889:373766..374696 | TCONS_00057292-exon-scaffold_286-1491911889:373766..374696 | Clytia hemisphaerica | exon |
| TCONS_00057292-exon-scaffold_286-1510915933:373766..374696 | TCONS_00057292-exon-scaffold_286-1510915933:373766..374696 | Clytia hemisphaerica | exon |
| TCONS_00057292-exon-scaffold_286-1575043694:373766..374696 | TCONS_00057292-exon-scaffold_286-1575043694:373766..374696 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_286 | supercontig | scaffold_286:373766..374696 . |
Blast
The following BLAST results are available for this feature:
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