TCONS_00057283 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057283
Unique NameTCONS_00057283
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1536

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057283 ID=TCONS_00057283|Name=TCONS_00057283|organism=Clytia hemisphaerica|type=transcript|length=1536bp
CCAGAGCCAAAGTTCTGCCAGACCCCCTgctcaaattatttttgttgcGC
TCAAAAAATTACTAGCCATCTGAAATCttcttatttgcagcactggaTAC
AGTACTACCTTTTAAAATTTGGTGTGATGTTTAAGCATGTACCCTCATTT
ACTTCCCCTTATTTAATATTtattggccaaaaaagtttggactgttcaaa
agtttttttctgactttatTTTCTATTCTAGCTTGACCTGGATGGTTAAT
TTTTAATGTAACAACatcattgtattttcagatttttaaatcattttagt
GTGAAAATAAAACTACAAAAAACATTCATCTTGTATAAATGGAATCAAAT
AAGAGTGAATATTCTGAACGAATTGAGGCATTGGAACTGCAAGAACTAAC
AGCCCAAAATGGTGGAGCTTCATTGGAGGTTTATAAAGAGTTGTTACTTT
TGTATCTCATGGAGTTTGATTTAATCAACGCAAAATTCCTCTGGAAAAGG
ATACCACTTACCGTGAAACTTGATAACGAGCTGACCACAatttggaaaat
tggtcaaTGCTTATGGAGACGTGAATTCCCAGCAGTGtatgaaataataa
aatcacACGAATGGTCTGAAGCGTTTAAAGAACCTTTACTGAAGCTTTAT
TCAATCTTGCAAAATAGGATGACGTGTCTTATAGAAAACGCTTATTCACT
AGTCAAAGTTGAAGATTTGAGTCAAGCCTTGGGAATTAGCGAAGAGCAAC
AATTGTTAGACTTTATCAATAACAGAAAGTGGGTTTTACACTCTGATACA
AAATTAGTGAAAGTTGATTGTCAACCTGATGAATCCAACACTACTACTGC
CAATACACAAGATAAACTGGATAGCTCTACTTTAACGCAATCCTTGCATC
GGTTGACAGATTATGTttcctttttggaaaattgatgGCTTGGTTTTCTA
TTTTCTAGGTTTATTATTTCAATATAATTATTCTTACTGTTGAAACAAAC
AaaacgtttttgtttttattgcacaaaatttgtaaaatagaaTTGAATTA
CCTTAAATTCATTGGGTTTAGAATAAGTCTCGATAATAAGTAAGTTATAA
TGTTAGACATTCTTTCGAAACATTTTGGAGAGGGAAGGTTCTATAAACTT
TAGTGTAGCTGTTTTGACTGGTTTTAATCCTTTAACCCAGCAGGTCACTA
AAGGGCTAAGCTGATACCATTATAAGGGGCTAACCTTgtttcttatcaaa
aaatttgtttttttgatgGTTGAGaaaaatcctttaaaaaaatttgcaac
aTCACTGTTTTTGTAGTTTcattatgaaaaattttcaagatattttcaTA
ATGAATTTTGTCCGttctaaaataaaaagcttTGAGAATTTCTGATCTtg
tgtattttatttattagcTCCCTGAAATTCACATTTTTGGTTCCCGTTTA
CTATTATTGAACAACAGAAAATCTTTGTACAGTTTATAAAAGTATTATTT
CTATGGCATTTAGTTTCATTTAAATAAGAAAAGTAT
Run BLAST on NCBI

protein sequence of TCONS_00057283-protein

>TCONS_00057283-protein ID=TCONS_00057283-protein|Name=TCONS_00057283-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
MESNKSEYSERIEALELQELTAQNGGASLEVYKELLLLYLMEFDLINAKF
LWKRIPLTVKLDNELTTIWKIGQCLWRREFPAVYEIIKSHEWSEAFKEPL
LKLYSILQNRMTCLIENAYSLVKVEDLSQALGISEEQQLLDFINNRKWVL
HSDTKLVKVDCQPDESNTTTANTQDKLDSSTLTQSLHRLTDYVSFLEN
Run BLAST on NCBI

transcript from alignment at scaffold_286:230920..232455

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057283 ID=TCONS_00057283|Name=TCONS_00057283|organism=Clytia hemisphaerica|type=transcript|length=1536bp|location=Sequence derived from alignment at scaffold_286:230920..232455 (Clytia hemisphaerica)
ATACTTTTCTTATTTAAATGAAACTAAATGCCATAGAAATAATACTTTTA
TAAACTGTACAAAGATTTTCTGTTGTTCAATAATAGTAAACGGGAACCAA
AAATGTGAATTTCAGGGAgctaataaataaaatacacaAGATCAGAAATT
CTCAaagctttttattttagaaCGGACAAAATTCATTAtgaaaatatctt
gaaaatttttcataatgAAACTACAAAAACAGTGAtgttgcaaatttttt
taaaggatttttCTCAACcatcaaaaaaacaaattttttgataagaaacA
AGGTTAGCCCCTTATAATGGTATCAGCTTAGCCCTTTAGTGACCTGCTGG
GTTAAAGGATTAAAACCAGTCAAAACAGCTACACTAAAGTTTATAGAACC
TTCCCTCTCCAAAATGTTTCGAAAGAATGTCTAACATTATAACTTACTTA
TTATCGAGACTTATTCTAAACCCAATGAATTTAAGGTAATTCAAttctat
tttacaaattttgtgcaataaaaacaaaaacgtttTGTTTGTTTCAACAG
TAAGAATAATTATATTGAAATAATAAACCTAGAAAATAGAAAACCAAGCc
atcaattttccaaaaaggaaACATAATCTGTCAACCGATGCAAGGATTGC
GTTAAAGTAGAGCTATCCAGTTTATCTTGTGTATTGGCAGTAGTAGTGTT
GGATTCATCAGGTTGACAATCAACTTTCACTAATTTTGTATCAGAGTGTA
AAACCCACTTTCTGTTATTGATAAAGTCTAACAATTGTTGCTCTTCGCTA
ATTCCCAAGGCTTGACTCAAATCTTCAACTTTGACTAGTGAATAAGCGTT
TTCTATAAGACACGTCATCCTATTTTGCAAGATTGAATAAAGCTTCAGTA
AAGGTTCTTTAAACGCTTCAGACCATTCGTgtgattttattatttcataC
ACTGCTGGGAATTCACGTCTCCATAAGCAttgaccaattttccaaatTGT
GGTCAGCTCGTTATCAAGTTTCACGGTAAGTGGTATCCTTTTCCAGAGGA
ATTTTGCGTTGATTAAATCAAACTCCATGAGATACAAAAGTAACAACTCT
TTATAAACCTCCAATGAAGCTCCACCATTTTGGGCTGTTAGTTCTTGCAG
TTCCAATGCCTCAATTCGTTCAGAATATTCACTCTTATTTGATTCCATTT
ATACAAGATGAATGTTTTTTGTAGTTTTATTTTCACactaaaatgattta
aaaatctgaaaatacaatgatGTTGTTACATTAAAAATTAACCATCCAGG
TCAAGCTAGAATAGAAAataaagtcagaaaaaaacttttgaacagtccaa
acttttttggccaataAATATTAAATAAGGGGAAGTAAATGAGGGTACAT
GCTTAAACATCACACCAAATTTTAAAAGGTAGTACTGTAtccagtgctgc
aaataagaaGATTTCAGATGGCTAGTAATTTTTTGAGCgcaacaaaaata
atttgagcAGGGGGTCTGGCAGAACTTTGGCTCTGG

Coding sequence (CDS) from alignment at scaffold_286:230920..232455

>TCONS_00057283 ID=TCONS_00057283|Name=TCONS_00057283|organism=Clytia hemisphaerica|type=CDS|length=597bp|location=Sequence derived from alignment at scaffold_286:230920..232455 (Clytia hemisphaerica)
tcaattttccaaaaaggaaACATAATCTGTCAACCGATGCAAGGATTGCG
TTAAAGTAGAGCTATCCAGTTTATCTTGTGTATTGGCAGTAGTAGTGTTG
GATTCATCAGGTTGACAATCAACTTTCACTAATTTTGTATCAGAGTGTAA
AACCCACTTTCTGTTATTGATAAAGTCTAACAATTGTTGCTCTTCGCTAA
TTCCCAAGGCTTGACTCAAATCTTCAACTTTGACTAGTGAATAAGCGTTT
TCTATAAGACACGTCATCCTATTTTGCAAGATTGAATAAAGCTTCAGTAA
AGGTTCTTTAAACGCTTCAGACCATTCGTgtgattttattatttcataCA
CTGCTGGGAATTCACGTCTCCATAAGCAttgaccaattttccaaatTGTG
GTCAGCTCGTTATCAAGTTTCACGGTAAGTGGTATCCTTTTCCAGAGGAA
TTTTGCGTTGATTAAATCAAACTCCATGAGATACAAAAGTAACAACTCTT
TATAAACCTCCAATGAAGCTCCACCATTTTGGGCTGTTAGTTCTTGCAGT
TCCAATGCCTCAATTCGTTCAGAATATTCACTCTTATTTGATTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036088XLOC_036088Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057283-proteinTCONS_00057283-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057283-exon-scaffold_286-1491911889:230920..232455TCONS_00057283-exon-scaffold_286-1491911889:230920..232455Clytia hemisphaericaexon
TCONS_00057283-exon-scaffold_286-1510915933:230920..232455TCONS_00057283-exon-scaffold_286-1510915933:230920..232455Clytia hemisphaericaexon
TCONS_00057283-exon-scaffold_286-1575043694:230920..232455TCONS_00057283-exon-scaffold_286-1575043694:230920..232455Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_286supercontigscaffold_286:230920..232455 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
74.03	71.2003	45.9212	41.5802	13.1597	10.9403	11.8241	12.2602	11.3097	11.1625	8.07176	7.56736	5.81432	6.62913	9.03281	9.40033	12.6241	9.58618	3.49569	5.47211	10.8308	10.9314	49.9969	46.8201	12.4003	16.5493	8.79826	7.47267	22.0775	24.8819
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011991WHTH_DNA-bd_dom
IPR033464CSN8_PSD8_EIF3K
Blast
[Close]
BLAST of TCONS_00057283 vs. Swiss-Prot (Human)
Match: CSN8 (COP9 signalosome complex subunit 8 OS=Homo sapiens GN=COPS8 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.103e-24
Identity = 69/205 (33.66%), Postives = 107/205 (52.20%), Query Frame = 3 
Query:  339 MESNKSEYSERIEALELQELTAQNGGASXXXXXXXXXXXXMEFDLINAKFLWKRIPLTVKLDN-ELTTIWKIGQCLWRREFPAVYEIIKSHEWSEAFKEPLLKLYSILQNRMTCLIENAYSLVKVEDLSQALGISEEQQLLDFINNRKWVLHSDTKLV----KVDCQPDESNTTTANTQDKLDSSTLT--QSLHRLTDYVSFLEN 932
            M  +   + + ++  E QEL A  G A+  VY +LL LYL+  D+ NA++LWKRIP  +K  N EL  IW +GQ +W+R+FP +Y  I +H+WSE  +  +  L    + R   L+  AY+ +  +D +  +G+  E+ +   +  + W   S T++V     V    D S        +      +   Q L RLTDYV+FLEN
Sbjct:    6 MAESAFSFKKLLDQCENQELEAPGGIATPPVYGQLLALYLLHNDMNNARYLWKRIPPAIKSANSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFALVSQAYTSIIADDFAAFVGLPVEEAVKGIL-EQGWQADSTTRMVLPRKPVAGALDVSFNKFIPLSEPAPVPPIPNEQQLARLTDYVAFLEN 209
The following BLAST results are available for this feature:
BLAST of TCONS_00057283 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CSN83.103e-2433.66COP9 signalosome complex subunit 8 OS=Homo sapiens... [more]
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