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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057278 ID=TCONS_00057278|Name=TCONS_00057278|organism=Clytia hemisphaerica|type=transcript|length=2356bp
TATAATTTAGAATGGTGTCACTTACTTTTGAGCCGTAGATTTTACTAGGT
TACAAATCACCGGGAATGCTTCGTGGtcaaataaaaattcttatCCTGTG
ATTtctgataaatattttttgcggTATCATAATTCAAAGATTACTCCATG
TCTAATTGGCATAACAAaagaaatacaaattagtaATTAAAGAAAAAGAT
GCAAAACTGTAAatgtgtaaataaaaaaaactaaataaaatatttgtaaa
taaAGGTGCTTtggacaaaaaataaggtgtaGAAAGAAGTACAAAATATA
AGTTTATAGATAACCCTAAACTCTGAAAAAATGTCGACAGGTGGATGGAA
TGGATGGAATGGGTCTGTAAATTTACCACACGATTTATATAAAAAGCAGC
CTGGACCCAGTCGTAttatctgcttttcaaaatttactgatGATGCTGCA
TACGTCCTAATATAGTAAAAATCATTACATCTTAGTAAAAAAGAAGGAAT
GTGATCATGGGTAAAAATTAAAGATTCAAGACCGGAACATTAAATAGAAT
TCAGTAATCCCGATATAAGCGGAGGGCAACACAACAacaaaaagatttta
tcaaaaaatactatttccctattattattattgtatcAATAAATATATAT
AATGTATTACAAAAAATAATGGGTTGTTTGTTACACACTTCTtcatacac
acttttttttataagaatacactttatatgaatgtccatgatgaaaatgg
ccaaaaaattaagaataagttaagaatatcaccatcatggaattttgcta
ctaaagctTAGAATGgccatttttaaagcattttcaatcataaattgtca
agtaaggctcactcctttcacaaaaatgccattttatgcttgagacgtat
gtactaaatgttaaattttgGGTGAATTTCGAACCTAACCaaagaaaata
ccctaaaaatattttaggatgaatttcccaaaaaagttaagaatatccat
gatgaaatggatttacaccaatcttataaaaaaagcgtgtatttaaagAA
TCAAGTAGTTGCTACATCTCTGGGAAACTCTCAGGAAACTGAAGAATGAC
AATAGCACTCtacattttgaaagaattttgaggAGTTTGTAAACATCGGC
AGATGGTTAAAGGATAGAAAGGATAAaaattgacaccataatcaagctcc
aagagcgtcgaaatggttgttttacgCATTGGGCACGTGGCTCTAAAAAG
ATGAGACAGAGgtgagcttactcttcaatatgGTCAAATGATTAGAAAag
acactctacgttggagaaggggaaaaaactcgataaaccaaatttatctg
gtcgctggtcgtggtcgtcggtcgtggtcgccatttctagtcgatgttta
gaaactacCAGAGTTTTGACCTCAACAGAGTTTTTCTAATACAATGGTAA
TAAAAATCAGTTCCCTCAAGGTACACATCCCTTTCAGACTTATGGGCCAT
TCTgactttaataataataatgtgtTTGGCTGCAACATACTTTTCACAAC
ATTTTATAAAGATTTTCGAGAAATGTGTAACTAACTAAGGACAGTAAGAA
AGAATCATTCCCCTAACGTAAAATTGagtagaaaatagaaaaatagtaAA
GTAAAGTATCATAAATACAATCGTGGTCAAAACTGGTGTCCAATAACTCT
TTTCCACCGACAagtcccccctctccccccaaaatcaatgttggagttga
atttttgcacCTTTACAAGACTCAACATCAACACTGAtattggggggagg
ggggtggacaaacagttctgtccaggattgtagtaaaacataacaaaaaa
cACATATGTAATAGATTGGCAATATCGCTATATCTATAAAAAGGacaaaa
ttggttaattttctTTACGAATTTCACGttactattttttataaaatgta
aatttatCACACACTGACCCTCAAAAGGCTTCAATATCTAACACCACTAC
ATTTCTGCACACACACATTTTGTCATTTGTAGAGTTATTCCCAAATTGGG
TTATAAGGCGAGATCAACGGGACAGTGACAATGGGCTATCCTGACACAAA
TGACATTAGCGAAGTTAAGTATCAGTAGATATTTTGGAACGACGAACGTT
TTTTCTCtaatacaaaaaatcaagcggATATTTGTTCTAGAAGCAACGTA
GATTATTTTACGGGGTAAGTCTGTCTTTCTTTCGGACTACATACCCGTCG
GAACAAccgtggggaggctgaaggctcaaatggAATAAAATTCAATagga
atttgaggaaaaaatctcattttgtggtgaggctgaagtctccccccggg
gggggg Run BLAST on NCBI transcript from alignment at scaffold_286:120975..123330 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057278 ID=TCONS_00057278|Name=TCONS_00057278|organism=Clytia hemisphaerica|type=transcript|length=2356bp|location=Sequence derived from alignment at scaffold_286:120975..123330 (Clytia hemisphaerica)
cccccccccggggggagacttcagcctcaccacaaaatgagattttttcc
tcaaattcctATTGAATTTTATTccatttgagccttcagcctccccacgg
TTGTTCCGACGGGTATGTAGTCCGAAAGAAAGACAGACTTACCCCGTAAA
ATAATCTACGTTGCTTCTAGAACAAATATccgcttgattttttgtattaG
AGAAAAAACGTTCGTCGTTCCAAAATATCTACTGATACTTAACTTCGCTA
ATGTCATTTGTGTCAGGATAGCCCATTGTCACTGTCCCGTTGATCTCGCC
TTATAACCCAATTTGGGAATAACTCTACAAATGACAAAATGTGTGTGTGC
AGAAATGTAGTGGTGTTAGATATTGAAGCCTTTTGAGGGTCAGTGTGTGa
taaatttacattttataaaaaatagtaaCGTGAAATTCGTAAagaaaatt
aaccaattttgtCCTTTTTATAGATATAGCGATATTGCCAATCTATTACA
TATGTgttttttgttatgttttactacaatcctggacagaactgtttgtc
cacccccctccccccaataTCAGTGTTGATGTTGAGTCTTGTAAAGgtgc
aaaaattcaactccaacattgattttggggggagaggggggactTGTCGG
TGGAAAAGAGTTATTGGACACCAGTTTTGACCACGATTGTATTTATGATA
CTTTACTTtactatttttctattttctactCAATTTTACGTTAGGGGAAT
GATTCTTTCTTACTGTCCTTAGTTAGTTACACATTTCTCGAAAATCTTTA
TAAAATGTTGTGAAAAGTATGTTGCAGCCAAacacattattattattaaa
gtcAGAATGGCCCATAAGTCTGAAAGGGATGTGTACCTTGAGGGAACTGA
TTTTTATTACCATTGTATTAGAAAAACTCTGTTGAGGTCAAAACTCTGgt
agtttctaaacatcgactagaaatggcgaccacgaccgacgaccacgacc
agcgaccagataaatttggtttatcgagttttttccccttctccaacgta
gagtgtctTTTCTAATCATTTGACcatattgaagagtaagctcacCTCTG
TCTCATCTTTTTAGAGCCACGTGCCCAATGcgtaaaacaaccatttcgac
gctcttggagcttgattatggtgtcaatttTTATCCTTTCTATCCTTTAA
CCATCTGCCGATGTTTACAAACTcctcaaaattctttcaaaatgtaGAGT
GCTATTGTCATTCTTCAGTTTCCTGAGAGTTTCCCAGAGATGTAGCAACT
ACTTGATTctttaaatacacgctttttttataagattggtgtaaatccat
ttcatcatggatattcttaacttttttgggaaattcatcctaaaatattt
ttagggtattttctttGGTTAGGTTCGAAATTCACCcaaaatttaacatt
tagtacatacgtctcaagcataaaatggcatttttgtgaaaggagtgagc
cttacttgacaatttatgattgaaaatgctttaaaaatggcCATTCTAag
ctttagtagcaaaattccatgatggtgatattcttaacttattcttaatt
ttttggccattttcatcatggacattcatataaagtgtattcttataaaa
aaaagtgtgtatgaAGAAGTGTGTAACAAACAACCCATTATTTTTTGTAA
TACATTATATATATTTATTgatacaataataataatagggaaatagtatt
ttttgataaaatctttttgtTGTTGTGTTGCCCTCCGCTTATATCGGGAT
TACTGAATTCTATTTAATGTTCCGGTCTTGAATCTTTAATTTTTACCCAT
GATCACATTCCTTCTTTTTTACTAAGATGTAATGATTTTTACTATATTAG
GACGTATGCAGCATCatcagtaaattttgaaaagcagataaTACGACTGG
GTCCAGGCTGCTTTTTATATAAATCGTGTGGTAAATTTACAGACCCATTC
CATCCATTCCATCCACCTGTCGACATTTTTTCAGAGTTTAGGGTTATCTA
TAAACTTATATTTTGTACTTCTTTCtacaccttattttttgtccaAAGCA
CCTttatttacaaatattttatttagttttttttatttacacatTTACAG
TTTTGCATCTTTTTCTTTAATtactaatttgtatttcttTTGTTATGCCA
ATTAGACATGGAGTAATCTTTGAATTATGATAccgcaaaaaatatttatc
agaAATCACAGGataagaatttttatttgaCCACGAAGCATTCCCGGTGA
TTTGTAACCTAGTAAAATCTACGGCTCAAAAGTAAGTGACACCATTCTAA
ATTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057278-exon-scaffold_286-1491911889:120975..123330 | TCONS_00057278-exon-scaffold_286-1491911889:120975..123330 | Clytia hemisphaerica | exon |
| TCONS_00057278-exon-scaffold_286-1510915933:120975..123330 | TCONS_00057278-exon-scaffold_286-1510915933:120975..123330 | Clytia hemisphaerica | exon |
| TCONS_00057278-exon-scaffold_286-1575043694:120975..123330 | TCONS_00057278-exon-scaffold_286-1575043694:120975..123330 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_286 | supercontig | scaffold_286:120975..123330 . |
Blast
The following BLAST results are available for this feature:
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