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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057270 ID=TCONS_00057270|Name=TCONS_00057270|organism=Clytia hemisphaerica|type=transcript|length=1204bp
CAAAGACAGACAATTCAAAAGTTTTGCAATCTGTAACATATTTTATTGCT
CAATCTTAAAGGCAAACAATGCCAATGCCAACAAGTAAAACAGCTACATA
ATCAAGGAGTTTGTCACTATTACAAATAAATAAgtaacatttttcaattt
tgataaaactttAAGGTTATACTTATAGCAGAGTCTCGCTAAAACACTGg
cctggaagcttattgttttaactttttgtcggctttttcctttgtgttta
tcaaaagacaaaaatcgatttgctcagttttgatcacgttaccaaatatt
ccacttgggattggtttaagatttaatcacatgatcgaaaagcgagcaaa
aaaaactaatttctcaagGCAAgctcaagtaagaaacaattgaaagaaac
aaaaaagcttCGGACTATATTCGGACCTTCTCTATTAATCATAATTTTCG
AAATCCATCAGGATGAAGGTCCCTAAATTATAAAATTCTTTCTAATTTGA
ATCTCTCttttattcgaaaaaaaattccgtACGCTCGACGTTAAATTAGC
AAAAGTCAATAATGCTTGGTTTGAATCATTTGAATATTGGGTGGTTATCT
TTCTTATGAAGGTGGTTTTCAAGTCTGATCAGTACAGGTGGGAGTCTTCG
TTGAAAATGTTTATCACAAACTAAGGGATATCAATTGAAAACGAATTTCA
TGGTCGTTTCGAGCGTTCTCCGTGTGATAAAGACATCGATATATTATGGT
CGGTCATTAGCTTGGTTATTTCTTTGAGCGACAAACCGTATCTTATTACA
GTACGTTAGGTTCAGTTTTGATTGTCTATGTGTGTGCCACACCTTTTGTT
TTTCGCAAATAAACAGCGAAATACAGATTTCCTGTTAAGTCGgtgaaaat
aaatctattgttgTTAAATGTTCAAGATTATTATTGGGCAGCAGTCCAGC
AGTCCAGCAAAAACGTCTTGAACAATGATCTTTACCCAAAATCATTTATC
ACAATGAAAAAATCGGAAATCAGGATAACACGTTTGAATAGTATGAAAAG
GGGAAATCAAACCCAAAGAATCCACCGAAGACAGATACACATTTCTACCG
AGTGAcaccggaaaaaattttcgatttccaaggttggaaatttcaagttt
tcttagttggaaaaaagataaaatccaatggaaaatccaacctgaaaatg
tggg Run BLAST on NCBI transcript from alignment at scaffold_286:1031910..1033832- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057270 ID=TCONS_00057270|Name=TCONS_00057270|organism=Clytia hemisphaerica|type=transcript|length=1923bp|location=Sequence derived from alignment at scaffold_286:1031910..1033832- (Clytia hemisphaerica)
CAAAGACAGACAATTCAAAAGTTTTGCAATCTGTAACATATTTTATTGCT
CAATCTTAAAGGCAAACAATGCCAATGCCAACAAGTAAAACAGCTACATA
ATCAAGGAGTTTGTCACTATTACAAATAAATAAGTAACATTTTTCAATTT
TGATAAAACTTTAAGGTTATACTTATAGCAGAGTCTCGCTAAAACACTGG
CCTGGAAGCTTATTGTTTTAACTTTTTGTCGGCTTTTTCCTTTGTGTTTA
TCAAAAGACAAAAATCGATTTGCTCAGTTTTGATCACGTTACCAAATATT
CCACTTGGGATTGGTTTAAGATTTAATCACATGATCGAAAAGCGAGCAAA
AAAAACTAATTTCTCAAGGCAAGCTCAAGTAAGAAACAATTGAAAGAAAC
AAAAAAGCTTCGGACTATATTCGGACCTTCTCTATTAATCATAATTTTCG
AAATCCATCAGGATGAAGGTCCCTAAATTATAAAATTCTTTCTAATTTGA
ATCTCTCTTTTATTCGAAAAAAAATTCCGTACGCTCGACGTTAAATTAGC
AAAAGTCAATAATGCTTGGTTTGAATCATTTGAATATTGGGTGGTTATCT
TTCTTATGAAGGTGGTTTTCAAGTCTGATCAGTACAGGTGGGAGTCTTCG
TTGAAAATGTTTATCACAAACTAAGGGATATCAATTGAAAACGAATTTCA
TGGTCGTTTCGAGCGTTCTCCGTGTGATAAAGACATCGATATATTATGGT
CGGTCATTAGCTTGGTTATTTCTTTGAGCGACAAACCGTATCTTATTACA
GTACGTTAGGTTCAGTTTTGATTGTCTATGTGTGTGCCACACCTTTTGTT
TTTCGCAAATAAACAGCGAAATACAGATTTCCTGTTAAGTCGGTGAAAAT
AAATCTATTGTTGTTAAATGTTCAAGATTATTATTGGGCAGCAGTCCAGC
AGTCCAGCAAAAACGTCTTGAACAATGATCTTTACCCAAAATCATTTATC
ACAATGAAAAAATCGGAAATCAGGATAACACGTTTGAATAGTATGAAAAG
GGGAAATCAAACCCAAAGAATCCACCGAAGACAGATACANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTCTATTAAT
CATAATTTTCGAAATCCATCAGGATGAAGGTCCCTAAATCATAAAATTCT
TTCTAATTTGAATCTCTCTTTTATTCGAAAAAAAATTCCGTACGCTCGAC
GTTAAATTAAGAAATATCTTTCTTATGAAGGTGGTTTTCAAGTCTGATCA
GTACAGGTGGGAGTTTTCGTTGAAAATGTTTATCACAAACTAAGGGATAT
CAATTGAAAACGAATTTCATGGTCGTTTCGAGCGTTCTCCGTGTGATAAA
GACATCGATATATTATGGTCGGTCATTAGCTTGGTTATTTCTTTGAGCGA
CAAACCGTATCTTATTACAGTACGTTAGGTTCAGTTTTGATTGTCTATGT
GTGTGCCACACCTTTTGTTTTTCGCAAATAAACAGCGAAATACAGATTTC
CTGTTAAGTCGGTGAAAATAAATCTATTGTTGTTAAATGTTCAAGATTAT
TATTGGGCAGCAGTCCAGCAGTCCAGCAAGGACGTCTTGAACAATGATCT
TTACCCAAAATCATTTATCACAATGAAAAAATCGGAAATCAGGATAACAC
GTTTGAATAGTATGGAAAGGGGAAATCAAACCCAAAGAATCCACCGAAGA
CAGATACACATTTCTACCGAGTGACACCGGAAAAAATTTTCGATTTCCAA
GGTTGGAAATTTCAAGTTTTCTTAGTTGGAAAAAAGATAAAATCCAATGG
AAAATCCAACCTGAAAATGTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057270-exon-scaffold_286-1575043694:1032745..1033832 | TCONS_00057270-exon-scaffold_286-1575043694:1032745..1033832 | Clytia hemisphaerica | exon |
| TCONS_00057270-exon-scaffold_286-1575043694:1031910..1032025 | TCONS_00057270-exon-scaffold_286-1575043694:1031910..1032025 | Clytia hemisphaerica | exon |
| TCONS_00057270-exon-scaffold_286-1510915933:1032745..1033832 | TCONS_00057270-exon-scaffold_286-1510915933:1032745..1033832 | Clytia hemisphaerica | exon |
| TCONS_00057270-exon-scaffold_286-1510915933:1031910..1032025 | TCONS_00057270-exon-scaffold_286-1510915933:1031910..1032025 | Clytia hemisphaerica | exon |
| TCONS_00057270-exon-scaffold_286-1491911889:1032745..1033832 | TCONS_00057270-exon-scaffold_286-1491911889:1032745..1033832 | Clytia hemisphaerica | exon |
| TCONS_00057270-exon-scaffold_286-1491911889:1031910..1032025 | TCONS_00057270-exon-scaffold_286-1491911889:1031910..1032025 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_286 | supercontig | scaffold_286:1031910..1033832 - |
Blast
The following BLAST results are available for this feature:
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