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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057237 ID=TCONS_00057237|Name=TCONS_00057237|organism=Clytia hemisphaerica|type=transcript|length=2336bpRun BLAST on NCBI protein sequence of TCONS_00057237-protein >TCONS_00057237-protein ID=TCONS_00057237-protein|Name=TCONS_00057237-protein|organism=Clytia hemisphaerica|type=polypeptide|length=582bp MHERNIFKNDKPNFEQLAQEYPEFTPYLHKGSSGKPYVNFKDPAALRALSRun BLAST on NCBI transcript from alignment at scaffold_286:195666..228942- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057237 ID=TCONS_00057237|Name=TCONS_00057237|organism=Clytia hemisphaerica|type=transcript|length=33277bp|location=Sequence derived from alignment at scaffold_286:195666..228942- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_286:195666..228942- >TCONS_00057237 ID=TCONS_00057237|Name=TCONS_00057237|organism=Clytia hemisphaerica|type=CDS|length=12243bp|location=Sequence derived from alignment at scaffold_286:195666..228942- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00057237 vs. Swiss-Prot (Human)
Match: MET16 (U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase OS=Homo sapiens GN=METTL16 PE=1 SV=2) HSP 1 Score: 263.077 bits (671), Expect = 2.053e-77 Identity = 153/391 (39.13%), Postives = 230/391 (58.82%), Query Frame = 3
Query: 6 MHERNIFKNDKPNFEQLAQEYPEFTPYLHKGSSGKPYVNFKDPAALRALSVVLLKKFFDLNLEIPLDRLIPTIPLRLNYLHWIEDLLNLNETEECSDEVLGIDVGCGASCIYGLLGNKMNQWKFIATDVDETSCKYAQQNVEQNHMQHQITIQHKRENESFFESVLSQHPQSQTKLFHFTMCNPPFFAEVYDGHVTYNRTNHRPSLXXXXXXXXXXXXXXGGEVSFVERMIDESLRTKNAIRWYTTMLGKKSSMKPLIQRLKDAEITNYTTTEFSQGRTTRWGLAWSFSDNRXXXXXXXXXXXXXXXXXXFIMSFTRDFFVETEILNIKSTAKSTEIDAVVWDIVKVVEKELFDLQISLDAPEHIELMNSGAYELT--GKAFANTWIHSRQ 1172
MH RN +K+ P+F LA +YP+F ++ +G+ +NFKDP A+RAL+ LL++ F L+++IPL+RLIPT+PLRLNY+HW+EDL+ ++++ S GID+G GASCIY LLG +N W F+AT+VD+ YA++NVEQN++ I + K ++ L + + ++ F MCNPPFFA + +R RP +S +T +E EGGE+ FV+R+I +SL+ K +RWY+ MLGKK S+ PL + L+ + T TEF QGRT RW LAWSF D+ K K +K KP E L++K++ +E + + +EK L DL++ +H + + G E++ A N+WIH R+
Sbjct: 7 MHARNRYKDKPPDFAYLASKYPDFKQHVQINLNGRVSLNFKDPEAVRALTCTLLREDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDK-STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVV-KVPQKTLLMDALKEESEI---IYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYTEFCQGRTMRWALAWSFYDDVTVPSPPSKRRKLEKPRKPITFVVLASVMKE---LSLKASPLRSETAEGIVVVTTWIEKILTDLKV-----QH-KRVPCGKEEVSLFLTAIENSWIHLRR 383 The following BLAST results are available for this feature:
BLAST of TCONS_00057237 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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