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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057231 ID=TCONS_00057231|Name=TCONS_00057231|organism=Clytia hemisphaerica|type=transcript|length=4251bpRun BLAST on NCBI protein sequence of TCONS_00057231-protein >TCONS_00057231-protein ID=TCONS_00057231-protein|Name=TCONS_00057231-protein|organism=Clytia hemisphaerica|type=polypeptide|length=936bp MESPDLDTRKADEAAEAKDEVLDDMKCKTRPPKLSRMRSPSFEGYFASRSRun BLAST on NCBI transcript from alignment at scaffold_286:61828..77062- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057231 ID=TCONS_00057231|Name=TCONS_00057231|organism=Clytia hemisphaerica|type=transcript|length=15235bp|location=Sequence derived from alignment at scaffold_286:61828..77062- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_286:61828..77062- >TCONS_00057231 ID=TCONS_00057231|Name=TCONS_00057231|organism=Clytia hemisphaerica|type=CDS|length=47787bp|location=Sequence derived from alignment at scaffold_286:61828..77062- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00057231 vs. Swiss-Prot (Human)
Match: SSH2 (Protein phosphatase Slingshot homolog 2 OS=Homo sapiens GN=SSH2 PE=1 SV=1) HSP 1 Score: 338.961 bits (868), Expect = 9.183e-96 Identity = 177/425 (41.65%), Postives = 270/425 (63.53%), Query Frame = 1
Query: 271 KCKTRPPKLSRMRSPSFEGYFASRSGAIALQTGNS-----VLKTTADKIGEIQNHLEHMVSILREIDALRMAVRIESKIPLKKRYLTVVSS----DKDHSAIIGIDWCQGQGPT--IGLVLPIHSTTYCHLDGDGGFYVSKTSTFNHIFRPVSVQTLWSARHVVERAIDYARKYKYFEGVDTDGFLDHYMQMINSDIQSITEWNEM-DCESFIMTKVNLPAXXXXXXXXXXXXXRTKLREIMRHLNLDEVSTKQVRDLCEKEIGFSLQNYKIYVSDQILVVMGQMDSASQILDYLYLGSEWNASDLVGLKKLGIGYVLNITREVGNFFPQHMSYYNIRVYDEESVELLKHWDHTFRFIEKAREAGSKILVHCRYGISRSASTVIAYLMKKEGWTMAHTIDYVVDKREIVQPNPGFTKQLIIYEGI 1509
+C+++P +S E + + A+ L GN + G++Q HL+ M +LR D +R+AVR+ES + RY+ VVS+ D + S ++G+D+ T +GLVLP+ S T HLDGDGGF VS T HIF+PVSVQ +WSA + +A + AR + Y+ G ++ +Y INSD S+ EWN M D +S L D E+E+ ++ I+TKLREIM +L+ +++K++R E ++ +L+ +K ++ ++++V++GQMDS +QI ++++LGSEWNAS+L L+ G+ Y+LN+TRE+ NFFP Y+NIRVYDEE+ +LL +W+ T++FI KA++ GSK LVHC+ G+SRSASTVIAY MK+ GW + DYV ++R + +PNP F +QL Y+GI
Sbjct: 29 ECRSQPRSIS-------ESFLTVKGAALFLPRGNGSSTPRISHRRNKHAGDLQQHLQAMFILLRPEDNIRLAVRLESTYQNRTRYMVVVSTNGRQDTEESIVLGMDFSSNDSSTCTMGLVLPLWSDTLIHLDGDGGFSVS-TDNRVHIFKPVSVQAMWSALQSLHKACEVARAHNYYPGSLFLTWVSYYESHINSDQSSVNEWNAMQDVQSHRPDSPALFTDIPTERERTERLIKTKLREIMMQKDLENITSKEIRTELEMQMVCNLREFKEFIDNEMIVILGQMDSPTQIFEHVFLGSEWNASNLEDLQNRGVRYILNVTREIDNFFPGVFEYHNIRVYDEEATDLLAYWNDTYKFISKAKKHGSKCLVHCKMGVSRSASTVIAYAMKEYGWNLDRAYDYVKERRTVTKPNPSFMRQLEEYQGI 445 The following BLAST results are available for this feature:
BLAST of TCONS_00057231 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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