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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057197 ID=TCONS_00057197|Name=TCONS_00057197|organism=Clytia hemisphaerica|type=transcript|length=912bp
AGCCACAAGATGGTCACTGGGGACGATGGTCTTCCTGGGGTGAATGTTCA
CACCAATGTGGAGAGGGAAAAGAAAAGCGAACACGAAAATGTGATGATCC
TGAAACAAAGAATGGAGGAAAGAATTGTCCGGGTGAATCTGTTCAATCAA
AAGATTGTTACATTAAACCATGCGCATTGGaacCGGATGATTGTTTATTC
GACGGGCAAGGAATGTGTTTTTGGCAAGACAAATCATATGATAAATCATA
CATGTGGAAAAGAGTTACCGGTGGAACACCGACTCCTTCCACTGGCCCTG
ATTCTGATCATACAACACAGAACACTACTAAAAACGGTCACTACATGCTT
GCTGAATCATCATCACCCGCCAGACTTGGAATGAAAGCTTCTCTGGTCAG
TAAAGTGTTCAAATCAACAACATCGGTCAAATGTTTAACATTCTTCTATA
GCATGCATGGAATGGGGATTGGAGTTCTCCGTGTTTTTGTCAAGTTTCCG
TATTCAGATACGTTTCGAAGCAGAGCGTGGACACAGTTTTCAAGGAGACA
TTGCATTGGATGATATTTTTATTGTTAACTCGCTATGTTCCAAGAAAAAA
ACACTTGTTCCGATACTGAGCACCACCCCAACGACCACCActactacaac
aacgaccaccactACTACAGCAACGACCACCCCAACTACAGCAACGACCA
CcccaactacaacaacgaccactccaactacaacaacgaccactccaacG
ACTACAACGACCACCCCAACAACTACCACGTCCACCCCAACCACTACTAC
CGGTATGTCTGATACTCTTTAGAAGGCTAATACTTAAGAAATGAAATCTA
ATCTAATCTAAAAGGGAAGGCTAATCGCCAGAAGTGGATGAAATTTCGCT
ATAATGTTGTTG Run BLAST on NCBI transcript from alignment at scaffold_286:646645..651338+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057197 ID=TCONS_00057197|Name=TCONS_00057197|organism=Clytia hemisphaerica|type=transcript|length=4694bp|location=Sequence derived from alignment at scaffold_286:646645..651338+ (Clytia hemisphaerica)
AGCCACAAGATGGTCACTGGGGACGATGGTCTTCCTGGGGTGAATGTTCA
CACCAATGTGGAGAGGGAAAAGAAAAGCGAACACGAAAATGTGATGATCC
TGAAACAAAGAATGGAGGAAAGAATTGTCCGGGTGAATCTGTTCAATCAA
AAGATTGTTACATTAAACCATGCGCATTGGGTATGATATATTCGATGATA
CTGTCAGGTTTTTTTATGATATCGTAGATTTTTTGTGcattagctctagt
ttagacggtcgactttctgccctgtATATTCAATCGTTGAAGTGTGCTAA
AGATACGctgcgacttgacagacgcAAGCTTCCAAGCCCTGGCGTATAAC
ATGACACCtgaacgacactgggagagcgatgTTCACGTGAGGCCAAACCT
AATGAGTGCCATGGCACGTCATTATGCCAGCCACACTCTTGGGCAAAAAG
CGGGCAAAAAGTTGGCAgttatttgcttgaaaaagattgaaagaagacat
tgcacattgacgtcaaaagatggAAATGCATGTACTTTAAACAGCCAATA
TTCTGCCCGCTTtcattcacaattagaatagggaGGACGAAAAGTGGGCC
GTTTATACTGGAACTTAGAACTTCAACCAGCTTAAAAGTCAAGCACAGTG
GAAAAGTCACTTTAACGACGAGAGTTTCCTCTAGAAAAACAACCTTTTTA
AAAGGATATTAGAACCATCCCCAAGATTTGTTCAAATATGTCTAACACCA
TTTCAAAAACCATGTGATAAAACCATATGATACGGTGGAGTCTCTTGAAC
Tagaatctctataactcgaacaagttttatggtctcttcagttaacaatg
ggcttttccagaaaaaaattgaatatggggggggggtggaggataacAAT
TTTCAGTAATTTACCCCCcagacaaagtgacttttgaccccccggacaac
gggttttaccccctggacaagcatcagttgacccccggacaacccaaaat
tacccctggacagagcaaatttaccccccggacaatatatcctccacccc
catgtacggacattttctggaagagcccaatgccTTTTAAAAACGTTACT
CCATAATTCGAAATTcctttaattcgaacaaatttgcgttccccTGTCCG
TGTTATTgagattttgataaattttggaGGTCATCTTCGCTATAACTCGT
AACTGGCCACTTAGCTTGTTGGATTCATTCATTTATTAACGAAGATGTCG
acaatatttgaaatttttagaacCGGATGATTGTTTATTCGACGGGCAAG
GAATGTGTTTTTGGCAAGACAAATCATATGATAAATCATACATGTGGAAA
AGAGTTACCGGTGGAACACCGACTCCTTCCACTGGCCCTGATTCTGATCA
TACAACACAGAACACTACTAAAAACGGTAAGAAGATTATATTTCAACTga
tatattcacttttttttgaacGATACTTCGATGATTGCATGAGAACGTGA
GATTCCTGAGATGTGACGAAAACTTGAAAACTGATTCAGAACAATCTTAA
CCTTTTGTTTTGGAAACATTTCAATGTAGATAAGATCTTTTAGCCCCTAT
ATCATCTCATGCTCAAGGGTTTCAAGAATATAATTATTCAAATCTGTaaa
tttcggaaaaaaatgAGAACCGCTGAGctccagtcaaaatttactGTTTA
ATatatagttgacgctctctaattcgacgttctactattcgataggctcc
cttattcgatgagaatccaattccccttgaagatcgaattagagagtgcc
AACTGTGTGTTCCAAATGATTCTTTCAGGTCACTACATGCTTGCTGAATC
ATCATCACCCGCCAGACTTGGAATGAAAGCTTCTCTGGTCAGTAAAGTGT
TCAAATCAACAACATCGGTCAAATGTTTAACATTCTTCTATAGCATGCAT
GGAATGGGGATTGGAGTTCTCCGTGTTTTTGTCAAGTTTCCGTATTCAGG
TACTGTTGAAATTTAGCTACACTGAAACGCCAGTCGGGCTAGACCgatat
cacgcgggaaaagtgaacGTAGGAGTTAGGTgtgcgtaggaagaaatttt
gtcggcggggCAGATTCTAGCCACATACTAAATTTGTAGGTCTTCGGCCA
CTGGAAAACCGTAAGTTAAAGTTTTGAAGGTCTTCGGCCGCTAGCGTAGG
TCTTCGTCCGTTGACGGAAAAAAATCTGCGTCGGCGGGAAGGAGTGAAAG
TTAATTAGCACCCTCTCACCAACTTccgctcgttctcctacgcagcttcT
ATTTCAACAATCACCCAGCCGCACGCGCTCGTGTTTTTGCTCTCTGAATG
aataattaacagactagtttacTATTTTGGCCATAACTCACGGATGGGGT
TAGTACTCTTGATGACAGATGAGGATAACCCCTAGATTTGAAATAAATAA
GCTCAGCCAGATATCAAtttatattttcgaaaaaattagaCCCTACTAGA
AAAAAAGAACCTGAAAGATAATATTGGTATGTGATAAATTTAGTagattt
tgattaaattttgcgacAAACTCAGACACTGAAAAGAGGGATCCTAACAA
AAGGGGCATATCCCATACCCATCTTCGCCTTAGTGAATCCACAACTCGGC
CAAATCCTCAGAACTAAATTATTATTAATGGGAttttccagaaagaaatt
gaatatgggggtggaggatataacccTTATTGGAGATTTACCCACGGata
ttgtgacttttgacccccggacagcaggtctagccccctggacaagcatc
agttgaccccatgAACATTCAAAAGTTTCCCTCAAATTGAGCAAAATTag
ccccaaacagagcaagtttaccccccccccNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNccccaaacagagcaagtttccccccccccc
ggacaaggcaaattttgtagatttttcactacccccgggcACTATATccc
tatatcctccaccccccccatgtaccgacattttctggaagaacccAATA
ACATATTTTAAAATTAAGAAATGGGATTCTTCAATGGTCTATCATATTGG
AGTCttgacatcaattttttaaacatcCATTCGTTTtaggaaaagaaaat
aaagtttgGGAAATGATAGGTCCACAAGGTCCAGGATGGAAAGTAGCTGA
AGTAGACATCCCTGAAAAACCTGATAATTACAATGAAAGGAATTCTTATA
TCTTTCTTGACTACAAGGTATATTCTTTTAAGGTCTTTATCTAATTTTAT
GTCCTTTATGTCctattttcgcgatttttttaattttgattgcGTACAAA
AGTCGCTGAGCACAAAGCAGACAGAGATTAAGTACACAAACATTTTTGCG
TTCTTGGTAAGACCCGACCAATTGAACCGCCGACCTTTTAAATcatatgt
tgaacggtgaaaaagaatgctgCTATTATAtacatgtttcggactcggtc
cgCTCTCAAGGGAATGAAGATAGATATCCTATAGATTACAGTCACTATAA
TTACCTTCCATTAGTTCCATTTATACTTAgacggaaaaatcgtctgagac
gAGAAGTTTAtaaaatgtgatctgtggaggatatcctatttattgaaaca
agtacactcctccataatgctcattttctaaattactcgtctcagacaaa
ttaatcgtTTCAGTATAAATAGAACCATTCTCTTTAAAGATACGTTTCGA
AGCAGAGCGTGGACACAGTTTTCAAGGAGACATTGCATTGGATGATATTT
TTATTGTTAACTCGCTATGTTCCAAGAAAAAAACACTTGTTCCGATACTG
AGCACCACCCCAACGACCACCActactacaacaacgaccaccactACTAC
AGCAACGACCACCCCAACTACAGCAACGACCACcccaactacaacaacga
ccactccaactacaacaacgaccactccaacGACTACAACGACCACCCCA
ACAACTACCACGTCCACCCCAACCACTACTACCGGTATGTCTGATACTCT
TTAGAAGGCTAATACTTAAGAAATGAAATCTAATCTAATCTAAAAGGGAA
GGCTAATCGCCAGAAGTGGATGAAATTTCGCTATAATGTTGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057197-exon-scaffold_286-1491911889:646645..646824 | TCONS_00057197-exon-scaffold_286-1491911889:646645..646824 | Clytia hemisphaerica | exon |
| TCONS_00057197-exon-scaffold_286-1510915933:646645..646824 | TCONS_00057197-exon-scaffold_286-1510915933:646645..646824 | Clytia hemisphaerica | exon |
| TCONS_00057197-exon-scaffold_286-1575043694:646645..646824 | TCONS_00057197-exon-scaffold_286-1575043694:646645..646824 | Clytia hemisphaerica | exon |
| TCONS_00057197-exon-scaffold_286-1491911889:647915..648070 | TCONS_00057197-exon-scaffold_286-1491911889:647915..648070 | Clytia hemisphaerica | exon |
| TCONS_00057197-exon-scaffold_286-1510915933:647915..648070 | TCONS_00057197-exon-scaffold_286-1510915933:647915..648070 | Clytia hemisphaerica | exon |
| TCONS_00057197-exon-scaffold_286-1575043694:647915..648070 | TCONS_00057197-exon-scaffold_286-1575043694:647915..648070 | Clytia hemisphaerica | exon |
| TCONS_00057197-exon-scaffold_286-1491911889:648473..648643 | TCONS_00057197-exon-scaffold_286-1491911889:648473..648643 | Clytia hemisphaerica | exon |
| TCONS_00057197-exon-scaffold_286-1510915933:648473..648643 | TCONS_00057197-exon-scaffold_286-1510915933:648473..648643 | Clytia hemisphaerica | exon |
| TCONS_00057197-exon-scaffold_286-1575043694:648473..648643 | TCONS_00057197-exon-scaffold_286-1575043694:648473..648643 | Clytia hemisphaerica | exon |
| TCONS_00057197-exon-scaffold_286-1491911889:650934..651338 | TCONS_00057197-exon-scaffold_286-1491911889:650934..651338 | Clytia hemisphaerica | exon |
| TCONS_00057197-exon-scaffold_286-1510915933:650934..651338 | TCONS_00057197-exon-scaffold_286-1510915933:650934..651338 | Clytia hemisphaerica | exon |
| TCONS_00057197-exon-scaffold_286-1575043694:650934..651338 | TCONS_00057197-exon-scaffold_286-1575043694:650934..651338 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_286 | supercontig | scaffold_286:646645..651338 + |
Blast
The following BLAST results are available for this feature:
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