TCONS_00057195 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057195
Unique NameTCONS_00057195
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1707

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057195 ID=TCONS_00057195|Name=TCONS_00057195|organism=Clytia hemisphaerica|type=transcript|length=1707bp
GACAAATTAAACTATAAAGTTAAACAATGAGGCAATTAGACGAGAAGAGA
TGTTTTGATTGCTCTTTATCAAAACAAGAAATGCTGAAATGCAGTCGATG
CCATGCTGCATGGTATTGTGATGCTAAATGTCAGAAAAAGGACTTCAAAA
GTCATAAAGGACTTTGTAAAGAAATTGGTAATTTACTGGCAGAAATCAAT
GGTGAAAACTACCTCAACCAACATGAGTCAATCAgAAAATTTTTATCAGA
GAATTCAAAAGATGACTTGCAACTTTGGCAACAAATGGTAACCGAAATTC
CAAAGTTACCTGATATTATGGTCAAAATATGTCGCAAATTTCAACCTCTT
TATATCCTGTACCTTGATGTTGCTAGTCGAGAAAATTCTAGACTACCAGC
AGAAGTTGCTCTTGAATGGTTGAACAAAGCTCTCAAAATTGTAGCTTATC
ACACAGAACATTTTGCaacaatgaagaaaaaagacaaCAAGGAGAAAAGA
TCAGCAAAATCTTCCAATGATGCAAACATGGATCGCTTTAAACGTCTTTA
CTTTGGTGGAGATATGAATTCTGATGGAAAGCCAAAGGAGTTGAAAGCCA
TTTTATGCAAGACAAGAGAACCACCTGAGGATCATCCATTAGCACATATT
TATGATTGCAGACGTTATGCTGTAAATGTTTTTAACAATGAAACTCAACC
TGATGGTCCTGCTGAtccgttcttttgttttggtgGGGTACAAAACATCC
CTGAGGTCCTTGTCTTCCTTGGTCGATATCAAGATGCTATGAACTATATC
TGGCATTGGAGCGATGGAAGGTTCTATGACACCTACACTCCGGGTGCCAT
CATCAAAAGATGGAAAGATTGGGTATCAGGAAATTTCAATTATGATGATA
TGTACAAGTCATCGGAACTGGTCGAGCTTGGTATTCGTAATTGGAGAAAG
TTTGCTGGAGAACCGGATGAAGGAAAAAATCTTATGAGAGTCTACGGATT
AATCATCCTCATCAGACTGCACACGTTATTGAACGCCGATGGAATACCAG
ATTTTAAAAGGAAAGAGGCATCACTAGATTTGATGATCAATCCTGGCATG
ATGACTCTTACCGACTCTTACATGTATTATGTGACTGGCAGAGAAGAATT
GATCAGTCAAATGACACTGTTCAAAATGTCTAAAGGGCATACATGTAGAT
CTGATCCAAGGAAAGAAATTCACCGCCTTGTTTGGGATCTCTACAAACGT
CTCTCTCAAGAAGAAGCGAACTTTTTGGGTGAATCCTACGAAAAATGTAT
AGCATCCGCCAGATCGTGGTTGTTCTGATCTAAAATAATTGGTAAATGGG
TCATTCTGGAATAACCCCCCCCCATATGTTTGAACGGTCGTACTTTTGGT
GCAGGAGTGCCCTTACAAAAAAGTGAGGTCTCTAAAATCTAGACAAAAAT
CGGAGGGTCACCTCTAAAACATAAGGGTGTATCTTAAATATCGGCAAATT
CAAAGTTGACCTTTTGATAATAACCACCTCAATATCAGAGACGATTTTTA
TTCTGGAATAGCCCAGTTTACGTCGCACCGCGTTAACTTGCATGAATCGT
TCTCCATATTAAACTTGAGCCCCCTGTTTCCTTAAAAGAAATTGAATGGA
CTTCTTCAATTTTAAGTAAAATGAAACTTCTCTTTCGGGTGCACCGAGTA
tttttat
Run BLAST on NCBI

transcript from alignment at scaffold_286:607357..612331+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057195 ID=TCONS_00057195|Name=TCONS_00057195|organism=Clytia hemisphaerica|type=transcript|length=4975bp|location=Sequence derived from alignment at scaffold_286:607357..612331+ (Clytia hemisphaerica)
GACAAATTAAACTATAAAGTTAAACAATGAGGCAATTAGACGAGAAGAGA
TGTTTTGATTGCTCTTTATCAAAACAAGAAATGCTGAAATGCAGTCGATG
CCATGCTGCATGGTATTGTGATGCTAAATGTCAGAAAAAGGACTTCAAAA
GTCATAAAGGACTTTGTAAAGAAATTGGTAATTTACTGGCAGAAATCAAT
GGTGAAAACTACCTCAACCAACATGAGTCAATCAggtattgtttttattt
tccttatCTGTTTTTTTCCTCCTTTCCTTTCTTAGTAGGCCAAGTATGGG
ATGTGAAATTTACCTGGTTGTCCTAGCGGGGCGAAATGGAAGATTCTCAT
ATCATATGGAAGAAACAGACCCTAGAGACACTATTCTTCCTTTTGGATTG
GTATTGTCatcaaataaaaatctttttactaTAGCAAAAGAAAAACTTAC
TGCCAACCTCATTTAAAATGGATCATAATACCTTAAACTAGGTTTTCTAT
TCTAGAAAATTTTTATCAGAGAATTCAAAAGATGACTTGCAACTTTGGCA
ACAAATGGTAACCGAAATTCCAAAGTTACCTGATATTATGGTCAAAATAT
GTCGCAAATTTCAACCTCTTTATATCCTGTACCTTGATGTTGCTAGTCGA
GAAAATTCTAGACTACCAGCAGAAGTTGCTCTTGAATGGTTGAACAAAGC
TCTCAAAATTGTAGCTTATCACACAGAACATTTTGCaacaatgaagaaaa
aagacaaCAAGGAGAAAAGATCAGCAAAATCTTCCAATGATGCAAACATG
GATCGCTTTAAACGTCTTTACTTTGGTGGAGATATGAATTCTGATGGAAA
GCCAAAGGAGTTGAAAGCCATTTTATGCAAGACAAGAGAACCACCTGAGG
ATCATCCATTAGCACATATTTATGATTGCAGACGTTATGCTGTAAATGTT
TTTAACAATGAAACTCAACCTGATGGTCCTGCTGAtccgttcttttgttt
tggtgGGGTACAAAACATCCCTGAGGTATAGACACTATTCTTTATCCAgt
tgaaattttatcaaaaattgtatTATAAAATTAATCCAAATCAAGTATGA
TTTAATAAATACTGTTcctttttaaaggcttttttggCTAGAAAAATCCC
ACTGAGTGAACTGAGTCAATTTTATGCCTACTTTGAGAGTAAGAGGTTTT
GCCTGTAATGTCAGTCTTTTAGTCTTAAAAAGTTTTGCTGGGCCTTAATC
GTGGGTCTCTTCtcaaaaagtctcaaaatcctATCTACATGCTACGGTCT
TAAGGCTACTATAAACGGAGAGATTATAATTTAAGTAAGATTTTTGCATA
AGTAGTCAAGTTATATTTAATACCATGTCCTGCTTTATCTTTTAGGTCCT
TGTCTTCCTTGGTCGATATCAAGATGCTATGAACTATATCTGGCATTGGA
GCGATGGAAGGTTCTATGACACCTACACTCCGGGTGCCATCATCAAAAGA
TGGAAAGATTGGGTATCAGGAAATTTCAATTATGATGATATGTACAAGTC
ATCGGAACTGGTCGAGCTTGGTATTCGTAATTGGAGAAAGTTTGCTGGAG
AACCGGATGAAGGAAAAAATCTTATGAGGTATATTCACATTTGGTTcgtg
tgaaaaaaattttgttatgaaaacataaaaatttaaaattaaaaaaagtt
tgattctAAAATATCCTCTGAGATTTAAGAATCATAGTAAGTAATTTAAG
CTGAAATTCTGAGCAGGTCAGATAACTTGCAAGATCTAAGTAGCATAGCT
CCAGCTTTTTTCAGATGAAAAATATGATGAAATACTGCAGTAAAGAGAGA
GCCGTATTGTAAAAGTTGAGCGTTCGGCTGCGGTGCGAAAGGTCGTGGTT
TCTGTTCATAGAAAAGCTCAAATTAAAGAATCGAAATagtgttttgatgc
tttttcgGTTATCCAACAAACATTAAAGAGAAGGATTAAGAGTAAATGAA
ATGTAATCTAGGGAGAAATAGTACCCCTCTCCTACCTTCGAAAATAGACT
GGAGTGGTTTATAATACGTGTAATAAAGTAATAATATGggttttatgtaa
aaataaactcTTACGAGATTATTATCAGTTATTAGATTATATACCAGTAT
AAACTACGATACTACAATTTGACcattttacttattttttactttgtaGC
GTAGACGTGTAGCGTACTAGACTACCAGACTTACTTATACTTAGTTACTA
CTGTAATGATAAAATTCTTTGTTTACATCTTAGAGTCTACGGATTAATCA
TCCTCATCAGACTGCACACGTTATTGAACGCCGATGGAATACCAGATTTT
AAAAGGTTATTTCATTACTGTGATATTTTATAGCTGAGAAAtgctttttt
tgattttattcccGGAGGAGGGGGAGGAAAGCTCAAAAATCCAAACCACT
TGATAAAGTCCAAGAATCActtaaaaaatgaaagtaatttttccCTCAAA
GGCTCACGATATGAaccaaaatttattgaaaatcgaTCAAAGTTATGGCT
TAGACGTAAGCGTCACCTTGCAAACATAATTAACTCCCCGGGTGTAATGT
ATTTCCAATATAATAGACTTTTTctttactttcaattttttggacctacc
catcccggtgaaggtcctataaattaacctttgtatccgtccgttcgttc
gttatgagcttttctcgagattggcctattagttttttctgattttttgc
accaTGATGCAAAattgcaatgcccaaaatgtgacggagcccgattttcg
gaaatttGTTTTggtaaatttcagccaaaaaacggctaaaaaagggttgt
tttttttttgtgaaatattttatgtttaactttttctgatgttttgcacg
aaagtagggtagcatcataggtaaaagatggctcaagcagattttcacGA
AAAACTTTTTTCGGCTCAAATagcgcatctttatctataagaattactat
ttATACGCATACATCGANTTTGCATGAACGTAGGGTaccatcattggtaa
aagatggttgAAGCAGATTTTCATGAAAACATTCTCGCCTCAATAATTGA
ATCTTTATCCataaaaatcaatatttatAAGCatgcatcaatgttcttag
ccaaattactcaattttttaatgagatagatATTCTTTTCCTTCCAATCC
CCTCCCTTAATACCACTCTAATGGgcacgggggggggggcaatcaATAAT
CAAAACGAACGacgaattttaataaatcgtcactatttttgTTCCGAATG
ATTGTTAATTTAACGGTCACGCTcaagtagatatcaattatatatttgtt
accttatcggggaaaaattcgtcacttgctggtagttggtaaacgcatta
aggccggagaaaattttcgtcggggaaaatattcgtcacttatTGTCCAA
aacttcgtcacttttccccgacgaagtttcccccgataaggtaaatgcat
aaccaggtaggtccataaaagtatcacttgtttgatTTAGGAAAGAGGCA
TCACTAGATTTGATGATCAATCCTGGCATGATGACTCTTACCGACTCTTA
CATGTATTATGTGACTGGCAGAGAAGAATTGATCAGTCAAATGACACTGT
TCAAAATGTCTAAAGGGCATACATGTAGATCTGATCCAAGGTATTATCCA
TTAGTttttatattcatgatatgcaccattgcaatgtcttctgacattat
cATTGCAATGTCTTATGATATTACCTCACGGACCCAACAGTTGATTgatt
gtaagtgacgtaaaatcagtcaatgcgtcactttcaaccaatcagctggt
GGGTCCGTGGAGAAcattaaaaaatccagggtagtCAGTTAATTGAGGGT
TAAAATCCAGGATGGTCAGTTAATTGAGGGttaaaatccagggtggtcag
ttaATTGAGGGTTAAAATCCAGGATGGTCAGTTAAATGAGGattaaaatc
cagggtggtcagttaAACGAGGATTAAAATCCAGGGCGGtccaaaaaatg
tgaaaaaaaaatccaataatCCTATAAACCAGTCCCTTCAGCcaacaata
ccttataaaccttGCTCCATAACTCAGaaattccataactcgaacaaatt
taagTCCCCGTGCGTGTTTGAGTCATAGAGACCCCACTGTACTACAGTGA
AGTATCCATAACTCGAAACCGCACGGGGAACTTAAATTTGTTCGACTTCG
TTCGATTTCGAGTTTTGGAGTAAGGTTTGTAAGGCATTGTTGGCTGAAGG
TTTATAGGattattggattttttttcacattttttggaCCACTTGTACTT
GTTCGAGTGAAGGAGgctttcgagttaaagagactctactttCTATACAA
AAGTGTCATTAACACTGATCTCCAGCTAACCTCCAAACTTCAACACGCAG
TTGACATTTCATTCTATTTTACTTTAAGGAAAGAAATTCACCGCCTTGTT
TGGGATCTCTACAAACGTCTCTCTCAAGAAGAAGCGAACTTTTTGGGTGA
ATCCTACGAAAAATGTATAGCATCCGCCAGATCGTGGTTGTTCTGATCTA
AAATAATTGGTAAATGGGTCATTCTGGAATAACCCCCCCCCATATGTTTG
AACGGTCGTACTTTTGGTGCAGGAGTGCCCTTACAAAAAAGTGAGGTCTC
TAAAATCTAGACAAAAATCGGAGGGTCACCTCTAAAACATAAGGGTGTAT
CTTAAATATCGGCAAATTCAAAGTTGACCTTTTGATAATAACCACCTCAA
TATCAGAGACGATTTTTATTCTGGAATAGCCCAGTTTACGTCGCACCGCG
TTAACTTGCATGAATCGTTCTCCATATTAAACTTGAGCCCCCTGTTTCCT
TAAAAGAAATTGAATGGACTTCTTCAATTTTAAGTAAAATGAAACTTCTC
TTTCGGGTGCACCGAGTAtttttat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036041XLOC_036041Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057195-exon-scaffold_286-1491911889:607357..607591TCONS_00057195-exon-scaffold_286-1491911889:607357..607591Clytia hemisphaericaexon
TCONS_00057195-exon-scaffold_286-1510915933:607357..607591TCONS_00057195-exon-scaffold_286-1510915933:607357..607591Clytia hemisphaericaexon
TCONS_00057195-exon-scaffold_286-1575043694:607357..607591TCONS_00057195-exon-scaffold_286-1575043694:607357..607591Clytia hemisphaericaexon
TCONS_00057195-exon-scaffold_286-1491911889:607862..608381TCONS_00057195-exon-scaffold_286-1491911889:607862..608381Clytia hemisphaericaexon
TCONS_00057195-exon-scaffold_286-1510915933:607862..608381TCONS_00057195-exon-scaffold_286-1510915933:607862..608381Clytia hemisphaericaexon
TCONS_00057195-exon-scaffold_286-1575043694:607862..608381TCONS_00057195-exon-scaffold_286-1575043694:607862..608381Clytia hemisphaericaexon
TCONS_00057195-exon-scaffold_286-1491911889:608752..608984TCONS_00057195-exon-scaffold_286-1491911889:608752..608984Clytia hemisphaericaexon
TCONS_00057195-exon-scaffold_286-1510915933:608752..608984TCONS_00057195-exon-scaffold_286-1510915933:608752..608984Clytia hemisphaericaexon
TCONS_00057195-exon-scaffold_286-1575043694:608752..608984TCONS_00057195-exon-scaffold_286-1575043694:608752..608984Clytia hemisphaericaexon
TCONS_00057195-exon-scaffold_286-1491911889:609640..609711TCONS_00057195-exon-scaffold_286-1491911889:609640..609711Clytia hemisphaericaexon
TCONS_00057195-exon-scaffold_286-1510915933:609640..609711TCONS_00057195-exon-scaffold_286-1510915933:609640..609711Clytia hemisphaericaexon
TCONS_00057195-exon-scaffold_286-1575043694:609640..609711TCONS_00057195-exon-scaffold_286-1575043694:609640..609711Clytia hemisphaericaexon
TCONS_00057195-exon-scaffold_286-1491911889:610897..611046TCONS_00057195-exon-scaffold_286-1491911889:610897..611046Clytia hemisphaericaexon
TCONS_00057195-exon-scaffold_286-1510915933:610897..611046TCONS_00057195-exon-scaffold_286-1510915933:610897..611046Clytia hemisphaericaexon
TCONS_00057195-exon-scaffold_286-1575043694:610897..611046TCONS_00057195-exon-scaffold_286-1575043694:610897..611046Clytia hemisphaericaexon
TCONS_00057195-exon-scaffold_286-1491911889:611835..612331TCONS_00057195-exon-scaffold_286-1491911889:611835..612331Clytia hemisphaericaexon
TCONS_00057195-exon-scaffold_286-1510915933:611835..612331TCONS_00057195-exon-scaffold_286-1510915933:611835..612331Clytia hemisphaericaexon
TCONS_00057195-exon-scaffold_286-1575043694:611835..612331TCONS_00057195-exon-scaffold_286-1575043694:611835..612331Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_286supercontigscaffold_286:607357..612331 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.646697	1.33661	1.40665	1.55546	1.41405	0.848737	1.48355	1.97933	0.975312	1.9618	1.08396	0.653515	0.988574	0.63071	1.14129	1.35001	2.04197	2.19336	0.50695	0.63871	1.74575	1.98077	5.87658	5.58986	14.154	21.6513	0.659003	0.686093	4.45289	5.27213
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057195 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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