TCONS_00057194 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057194
Unique NameTCONS_00057194
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length769

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057194 ID=TCONS_00057194|Name=TCONS_00057194|organism=Clytia hemisphaerica|type=transcript|length=769bp
taggtAACAAAATCTCATAGTAGTCAGAATGAAGcaattggatgaaaaaa
tttgttttgattgctcATCATCAAAACAAGAAATGTTGAAATGCAGTCGA
TGCCATGCTGCATGGTATTGTGATGCTAAATGTCAGAAAAAGGACTTCAA
AAGTCATAAAGGGCTTTGTAAAGAAATTGGTAATTTACTGGCAGAAATCA
ATGGTGAAAACTACCTTAATCAACACGAGTCAATCagaaaatttgtcaCC
CAGAATTCAGAGAATGACTTTGAGCTCTGGCAGCAAGCATTAGCAGAATT
GGTGAATTTACCGGACATAATGGTAAAAATATGTCGCATGTTTCAACCAT
TGTGTAATCTCTACATTCTTATTGCCAGTCACAAAAATGCTGAACTTCCT
GCAGAAGTCGCACTTGAATGGTTAAACAAAGCTCTCAAAATTGTGGCTTA
TCATACAGAACATTTTGCAGCAATAAAGAAAGTAAATACAAGTAAAGAGG
AGCAAAAAAGCTCTTCCATGGATGACATTTTCCAAAGAGATGATCGTCTT
TATTTTGGTGGAGATATGGGGATGGATGGAAAGCCTAAGCAGCTCCCAAA
AACCAAATGTAACACAGAATCCTCATCTGAAAAAAAGTCACGTGCCTTTG
ATTGCAGTCATTTTGCCCGTCGCCATGTCCTTTTTGAGAATCAACCTAAT
GGTCCAGCTGATCCCTTCTTTTGTTTTGGTGGGGAACAGAACATGCCTGA
GGTCCTTGTCTTCCTTGGT
Run BLAST on NCBI

transcript from alignment at scaffold_286:601353..608769+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057194 ID=TCONS_00057194|Name=TCONS_00057194|organism=Clytia hemisphaerica|type=transcript|length=7417bp|location=Sequence derived from alignment at scaffold_286:601353..608769+ (Clytia hemisphaerica)
taggtAACAAAATCTCATAGTAGTCAGAATGAAGcaattggatgaaaaaa
tttgttttgattgctcATCATCAAAACAAGAAATGTTGAAATGCAGTCGA
TGCCATGCTGCATGGTATTGTGATGCTAAATGTCAGAAAAAGGACTTCAA
AAGTCATAAAGGGCTTTGTAAAGAAATTGGTAATTTACTGGCAGAAATCA
ATGGTGAAAACTACCTTAATCAACACGAGTCAATCaggtaaaatttaaaa
tatattttgcaCTTTTATGGTCAAAGGAAGTGAACATAATATTAGTAATA
AATTTTTGTATGGTTTTTCTTTGTTGCAACACGCCAAgcatttatatatt
tttatagtAAATTTTCATGAGAAATTTGATATATGGATTTGatataaaaa
actttcaagcatcaggaaataaaaatgaaataagctttttccatattttt
agaaaatttgtcaCCCAGAATTCAGAGAATGACTTTGAGCTCTGGCAGCA
AGCATTAGCAGAATTGGTGAATTTACCGGACATAATGGTAAAAATATGTC
GCATGTTTCAACCATTGTGTAATCTCTACATTCTTATTGCCAGTCACAAA
AATGCTGAACTTCCTGCAGAAGTCGCACTTGAATGGTTAAACAAAGCTCT
CAAAATTGTGGCTTATCATACAGAACATTTTGCAGCAATAAAGAAAGTAA
ATACAAGTAAAGAGGAGCAAAAAAGCTCTTCCATGGATGACATTTTCCAA
AGAGATGATCGTCTTTATTTTGGTGGAGATATGGGGATGGATGGAAAGCC
TAAGCAGCTCCCAAAAACCAAATGTAACACAGAATCCTCATCTGAAAAAA
AGTCACGTGCCTTTGATTGCAGTCATTTTGCCCGTCGCCATGTCCTTTTT
GAGAATCAACCTAATGGTCCAGCTGATCCCTTCTTTTGTTTTGGTGGGGA
ACAGAACATGCCTGAGGTATTTGTATATCCAATTAATGTtgacttatttt
gaaaatttatcttGAAGCTTTTTGAGTTCAGACACAAGATCGTCTCTGGT
GAAATGTGCGATGACTGGAGCAAGAAAAACAACAGATACAGAAGGACTGA
TCTACACTCTGCTGCGAATTCACACCTAACACCTGAATGAGTCtaattaa
tgtcataaaacacTTTAACTTTCTGCCTCAGCTATTGTAGCTTTGCAAAG
TTTTGAATCACTCTAAAAAAACACTTCAGTAGTATTTTGTAGGCATTAAT
TTGACAACTAGAGAATATGATAAGGATAAAATTAATATAATTATTAACAA
TAGTTCCTTTTTCCTATCAAAAACTTTCCATTCTTACAGGTCCTTGTCTT
CCTTGGTAGATATCAAGATGCTATGAACTATATCTGGCATTGGAGCGATG
AAACATTCCATGACACCTACACTCCAGGTGCTATCATCAAAAGGTGGAAA
GATTGGGTATCAGGTGATTTCCATTATGAAGATGTAAACAGTAAAGAAGA
ACTTCTTATTCCAGAGTGGCACGTTTTTGATGGAGAACCAGAAGAAGGGA
AAAATCTATTGAGGTATGTTTGCTTTAAAGAGATTTGGGGAACTACAAAC
TAACAGCTTCTATTGTTTATTTAGTATAATGGGCAGTATAAACCTTTTAA
ACTAGTGATGACCCTGGCCTCTTATTTAGAGagataattttgagattttg
tttATAATATGGAATTGTAAAAAAGTTAGTAGATATTAGtgttcttttca
tttttgtcattattcttaaatgtgtcaaaaaaatggaatgttgatgaaaa
agaaaactcaATTATTAGTGCAGGCTAGTGATCTGTGTATCTTTGAAACT
TtcctaaatttttctttttatagaatctATGGGGTAATAATTTTGATCAG
ACTGCATACACTACTGAATCCTGATGGAAAAGAAGATTTTAAAAAGTATG
TACTGTATAATATACAATCAACATTTAAGTTAGCCTTTCTCTTTCGAATG
CGGAAAAGCTTGCATTGATATAACACGCATGGACAAATTTAAAACTAGAA
TAAAATCTACAATAAACTGGCCTAAAGATTGCGCTAGAAACACTGTGTAG
CAACTGTAAGCAATTGTAGTTCTTTATTTCTGAATATCGCTTGaattttt
tctcgaattttcttaagcacttttttattctatttattttactgtTTGAG
TGTATGAACcttttttttcatagaaaaaaatcatctctcGATGATCTAAT
CGATCCCTACATTACAACAATCACAGACTCATTTTTGTATTATGTGAGTG
GGCGTGAGGAATATATTAACCGGATGACTCAATTCATATTGGCTCAAGGT
CATGGCTGCAAGCCAGATCCAAGGTGAGATAGACTCTTTTATAGCTTAAA
AATAGCTGAAAAGGTCTACATAACCTTAAAAGAAGAATACTGCATAcgtt
tttggggtaaattttcGAGAGCATCATTATGCTGTTAAAAAAATTAGCGC
AGATGTTGTACTCATTATGCTACAAATGTAGAATTGCTTAACTCTgtttt
tgctatattgtgcacgtacctttaacttctaccccaagcgaaaatttgct
ataaaatttgctatataaatcacatcttcaaaccgatgattttatcaaaa
tgaccttgaatggtttggcttgaagcNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNccccccccccccgaaaaaagatttttttgctgTGCACAAATGTGTT
GTGTGTAGACAACACACAACAGCCTTGTGATTGacccaaatttcaaattt
aaaagtcaataaTTATTTAATTGCTTCAATTTCAGAAAAGAGCTTCATCG
CCTTGTTTGGCATCTTTACCACAACAGGCTGTCCCAAGAAGAAGTGGGTT
ATCTACTGGATGCTTACAAAGAATTTGCTGAATCTATGAGAATGTGAATT
TTCATTGCgatcccagtcctttttttttGCTCTTATCTCTACCCCGCTTC
TTTCTACTGTTTCCATAGCTACTTTCTAACTGTCACCATGTATCATGTAT
TCATCTTGCATCGctgtattatatttcaaaacatattttaaaatagaaaa
agtcataaaatattttaggttttagtatttattttgagaaaacaaaacag
aaaagtaTGATTTTTTATTGTACATTTTCATAGGCAAACTTATTTTAGGA
GATTATTTTATTACAATACTTTCTCTTCTTAACATTACAAAAACATATCA
GAATTAAAGATTGTTTTATTCAGATAGTTAAacacaataaaaaaacaatt
tatataTGCAGAAATTTGAGTTAATAGCAGTAGAACAAAATTAAAAGAGC
AATATGACACAACTAATACTCTGATGGACACTTTAGATACAAAATTCATA
TTAGTGCCAATAACCTAACATCGCGTTCCAAAGTAAGAATATACTCTCTA
AATGTTGAACTCAATGGCTTCTAAAAAAAGACCCCTTTGTCACAGACCTG
CTGGAAGCCGGGATCCACTGGAAAGATTGACAagaattttgtccccggtg
ggaaaataccttagaattctttttcatccctattcgaaattcaatgttta
aacattgctcttcaaaaccattgccactggtttttttaatcttggaacaa
agaaatatttctatccccattgggactccaataggaatttttatccccac
tgagaaaaaaagttccactgcGGCTGCGAGACAGTGGtgtaaaaattata
attatacAATATATAGACAGCCGTATagatttcttcaaattttctttact
cCTAGACAAATTAAACTATAAAGTTAAACAATGAGGCAATTAGACGAGAA
GAGATGTTTTGATTGCTCTTTATCAAAACAAGAAATGCTGAAATGCAGTC
GATGCCATGCTGCATGGTATTGTGATGCTAAATGTCAGAAAAAGGACTTC
AAAAGTCATAAAGGACTTTGTAAAGAAATTGGTAATTTACTGGCAGAAAT
CAATGGTGAAAACTACCTCAACCAACATGAGTCAATCAggtattgttttt
attttccttatCTGTTTTTTTCCTCCTTTCCTTTCTTAGTAGGCCAAGTA
TGGGATGTGAAATTTACCTGGTTGTCCTAGCGGGGCGAAATGGAAGATTC
TCATATCATATGGAAGAAACAGACCCTAGAGACACTATTCTTCCTTTTGG
ATTGGTATTGTCatcaaataaaaatctttttactaTAGCAAAAGAAAAAC
TTACTGCCAACCTCATTTAAAATGGATCATAATACCTTAAACTAGGTTTT
CTATTCTAGAAAATTTTTATCAGAGAATTCAAAAGATGACTTGCAACTTT
GGCAACAAATGGTAACCGAAATTCCAAAGTTACCTGATATTATGGTCAAA
ATATGTCGCAAATTTCAACCTCTTTATATCCTGTACCTTGATGTTGCTAG
TCGAGAAAATTCTAGACTACCAGCAGAAGTTGCTCTTGAATGGTTGAACA
AAGCTCTCAAAATTGTAGCTTATCACACAGAACATTTTGCaacaatgaag
aaaaaagacaaCAAGGAGAAAAGATCAGCAAAATCTTCCAATGATGCAAA
CATGGATCGCTTTAAACGTCTTTACTTTGGTGGAGATATGAATTCTGATG
GAAAGCCAAAGGAGTTGAAAGCCATTTTATGCAAGACAAGAGAACCACCT
GAGGATCATCCATTAGCACATATTTATGATTGCAGACGTTATGCTGTAAA
TGTTTTTAACAATGAAACTCAACCTGATGGTCCTGCTGAtccgttctttt
gttttggtgGGGTACAAAACATCCCTGAGGTATAGACACTATTCTTTATC
CAgttgaaattttatcaaaaattgtatTATAAAATTAATCCAAATCAAGT
ATGATTTAATAAATACTGTTcctttttaaaggcttttttggCTAGAAAAA
TCCCACTGAGTGAACTGAGTCAATTTTATGCCTACTTTGAGAGTAAGAGG
TTTTGCCTGTAATGTCAGTCTTTTAGTCTTAAAAAGTTTTGCTGGGCCTT
AATCGTGGGTCTCTTCtcaaaaagtctcaaaatcctATCTACATGCTACG
GTCTTAAGGCTACTATAAACGGAGAGATTATAATTTAAGTAAGATTTTTG
CATAAGTAGTCAAGTTATATTTAATACCATGTCCTGCTTTATCTTTTAGG
TCCTTGTCTTCCTTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036041XLOC_036041Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057194-exon-scaffold_286-1491911889:601353..601589TCONS_00057194-exon-scaffold_286-1491911889:601353..601589Clytia hemisphaericaexon
TCONS_00057194-exon-scaffold_286-1510915933:601353..601589TCONS_00057194-exon-scaffold_286-1510915933:601353..601589Clytia hemisphaericaexon
TCONS_00057194-exon-scaffold_286-1575043694:601353..601589TCONS_00057194-exon-scaffold_286-1575043694:601353..601589Clytia hemisphaericaexon
TCONS_00057194-exon-scaffold_286-1491911889:601805..602318TCONS_00057194-exon-scaffold_286-1491911889:601805..602318Clytia hemisphaericaexon
TCONS_00057194-exon-scaffold_286-1510915933:601805..602318TCONS_00057194-exon-scaffold_286-1510915933:601805..602318Clytia hemisphaericaexon
TCONS_00057194-exon-scaffold_286-1575043694:601805..602318TCONS_00057194-exon-scaffold_286-1575043694:601805..602318Clytia hemisphaericaexon
TCONS_00057194-exon-scaffold_286-1491911889:608752..608769TCONS_00057194-exon-scaffold_286-1491911889:608752..608769Clytia hemisphaericaexon
TCONS_00057194-exon-scaffold_286-1510915933:608752..608769TCONS_00057194-exon-scaffold_286-1510915933:608752..608769Clytia hemisphaericaexon
TCONS_00057194-exon-scaffold_286-1575043694:608752..608769TCONS_00057194-exon-scaffold_286-1575043694:608752..608769Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_286supercontigscaffold_286:601353..608769 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.524803	0	0	0	0	0	0	0.458101	0	0.28954	0	0	0	0.0439549	0	0	0	0.792339	0	0	0	0	0	0	0	0.285832	0.062675	1.07624
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057194 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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