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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057190 ID=TCONS_00057190|Name=TCONS_00057190|organism=Clytia hemisphaerica|type=transcript|length=838bp
CAAGGCTAAACATTCGAAATGACTGTCCCTTTAAATTCCCGCGtgtattt
gttttgattctggTCACGGACAAGATTTTTTTGGTTTCAgactttttctt
tcactttgttGCCTTCTTTTTCATTAGTTTGGCCTTTCCAGAACTTCAAT
ACCAGATAATTGAATTGAAGAATTTTGCTTAGAATGGCGCAGGGAAAGCT
AAAAGTAAAAGGATCTGGTGGAGTTCAGAAGAAGAGCAAGCATCAAAAGA
AAAACCACATGGGGCCAAAGAAAGGAGGTAAGAAGAATATAGcaccaaaa
aaacaacaaaagatcAAAGAAAAGAAGTTGAAAGTTCATTTGGAGAGGAG
TATTCAATCCAATATTGAACAACAGCTTGTACAAAAAGCCGGACCTGAAA
GTCTAAGTCTTGTTAAAGCACCAGAAACCAGTACTTCAACCAGCGCTGGt
ggtaaatcaaaacaaaccaagaAATAACAACAGCAAATGGAATCCATTGT
GAAGAGTTATGATTTAATACAGGAGAAGGTCAGCTGGTTATTTCCTTTCA
ATTACTTCGGTTTATTCACATTAAAAAGCTGACTGTGCTTTTGAAGCATT
CTGGTCCGCTTTTTGTCAAAGTGAACAGATTTTCGAAATCTACAAAATTA
GCATTATTTTCTTCACAAAGaagttattatttatttattgctAAATAATA
AGCTAATAAAGTAGACTCTGATTTTTAAGGGTATAATTTTTACATATCGA
AAACAATTTTatattcagatttttaaaatttggtgtCATTTTTACATGAA
ATAGTCTTTTATCAAGTGAAAAGATTGTCGAAATGCTA Run BLAST on NCBI transcript from alignment at scaffold_286:549872..558419+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057190 ID=TCONS_00057190|Name=TCONS_00057190|organism=Clytia hemisphaerica|type=transcript|length=8548bp|location=Sequence derived from alignment at scaffold_286:549872..558419+ (Clytia hemisphaerica)
CAAGGCTAAACATTCGAAATGACTGTCCCTTTAAATTCCCGCGtgtattt
gttttgattctggTCACGGACAAGATTTTTTTGGTTTCAgactttttctt
tcactttgttGCCTTCTTTTTCATTAGTTTGGCCTTTCCAGAACTTCAAT
ACCAGATAATTGAATTGAAGAATTTTGCTTAGAATGGCGCAGGGAAAGCT
AAAAGTAAAAGGATCTGGTGGAGTTCAGAAGAAGAGCAAGCATCAAAAGA
AAAACCACATGGGGCCAAAGAAAGGAGGTgagatttttctttcattgatc
TAGCAGCTTAGAATATATAAACCTCCTTTATAAGGATTTGAAAGGAGGCT
GGTATTacctcttttttttctttctttacagCAAAACAATGCTGATATAT
CAGTTGACAAAGGGTTTACGCACAGAGAACGAGTCTCATGTTCAAAACGA
AAAAGAGATTCTACAGGACGCTACCTGTTGCTTAAAAGAATCTCgtactt
ttttttagaaatcttaaatccaaaagaaatttcaaaacctaaaatagacc
ttttcgcctttccatccgccattttgaattttatgcaaaaatacaAGAAC
GAAAAAgatgtggttggatttagttggaaaatatgcaaaacttTTATGca
cacaaaaattgaaaagacaaaaaatacATCTTatatataaagaaatatta
taatcattaaaacaataaaagatggaatttcttaatcaaaaaaaacattt
acagaacaacaaaagccttttagaaatttgttctcaaagacatagcatat
tctgttttcatgccattcaaaaattccacgaaaacggagtacacacatca
aactttaaaaacacgcaaactgaaagcaataattatgacgtcatacaTTC
TTTCCCgtgcaagaaaatattaaaaccccCGTTTTGATCAACAAGGTCAA
CCCCAACATGGTTAACAGACCTGTTAACTTGAGATGTCCATTTTGTgtga
gataaaaatttccaagtgaaatCCGAAAGCTTAGCCCTTATTTTCCAAAA
TAGAAACAGGggaaactttttccaaaaatcagggagactttttgccaaaa
tttgagaaatcagagaaagttttttcaaaaattgaaaacgtGTGAGATTG
TGTGagaaatcaagtttttcaaaaattgcgaAAAGGTTACAAACTTAAAA
CCGAAGCTTTTCACTTTactgaggaaaatatacggaaaatctggaacgag
taaaatatttccaCGTTGTATgagcgcagggcacttttgtagcaaagtga
cgttagattgcttttATTGCACCAAcatctttttgtcaatttatattttg
tacatgtaaattacaagatatattgtatatattgtattgtttttaaccaa
tcagattgcaaatattttttggatcgccgatgaTAAGAAACCTCTAGCTA
ATTGTAATCAGGAATGGCCAAACTTTGCAAGAACGATCAAGAcatgttgt
tttattttaattcaGGTAAGAAGAATATAGcaccaaaaaaacaacaaaag
atcAAAGAAAAGAAGTTGAAAGTTGTAAGTAGTTTTACGTTGTATGTACA
TTACCCTACACAATCTAAGACAAGGATTACTgctctaaaataaaattaaa
gagttatttttgaaataagaaTAACCCATTTTTACTAACCCATTTTTACT
AACCAAATAAAGATATCTCAAAACTTTTCCGAAATgtcagaatttcaaaa
cattctgCTTTTCTTTTGGATGAAGATCGATTAACCATCTTCAAACTTGG
ATGTAGCATGCAGCTAGTATTCTGctaatatataattttttgtacgacat
ttaaaaaaattaaagtgaaaatTTTACAAGGGATGATAAAATTTTGTATA
CATGCTTAAAggttattattattaatatattattaatttatttgtcaACA
CAGGTCAGGTTCTATATACCCAACAATATATATACAAGCTATATacaatt
tttggcattttcccttgagaacggaccgagtccgaaacatgtcgggaaaa
atcgaaatataatagccgcattctttttcactgtCCAACACACAATTTTT
GGCAGTAAAAACTGATGTGGACCTGCAGgctaagaaacaaaaaagtaaaa
ctgCTGCGAAGGCAAAATGCATTTTATNCTGCAGgctaagaaacaaaaaa
gtaaaactgCTGCGAAGGCAAAATGTATTTTATACAAGACTAAGGAGTTA
GGCTAGGTTAAAAGTGTATCTGAGAAATTAAGGAAGAGGATTTAGAATAT
GTAAATCTTATGTGtcagggggggtcatgcagttagtACCAGACACGTTg
acggttagtaccgtggtgggtcattttcattttaaggattttgcagttag
tacctactgggtactaactgctgaaagggggtggtatttcagaatttttc
aaaaaatcaattagtactGTAGGGTACTAATTGCTGAAAGGGGGCGgtat
ctcagaatttttcaaaaaatcaattagtactTTAGGATACTAAGTGCTTG
AAAATGGGTTGCTGTCTACTGTCtgccttttaaaaaaagtctcaGCTGAA
ATATTTTGACATTACTCACTCAAATGTTTTGACCTTACAATGTCTTCTAA
TTTTACAATGAACAATATATCAGACACTTTGCAGTCTCTTCTATTCACAG
GATGAAAGACACACCGGACACGCCACATTcgatttcatttgttttgattc
agTTTGATTttgtagtgtcttctttttttgataacAAGAGATTTGACTGG
AATTGATGCAAAAGTCAGACGGCTGATTTGAACATATTTGAAGAGTTGTT
ATAAACTTTTAGTGAAGTTAGAGATGTTTAAAATCACAATGCTTTAAAGC
CTTCTGCTTTGACGTGGCGCTTTTTAATAGAAAGTCCTGAAAAGGGTTTG
TATAACTTCTACCTTTCTGAAATTTAGGCAATTCTTACAAACATTTTCTA
ATTAACTTAAATTGTATGTATATCAATGCTAATATAAGCAATTCTTCTTT
TCCTCCATTCTTTCTCCTTTTCTTTTCATCAAACACACACAAGAGAATGA
CGTTCCATTTACGATAATTTCGAATGTATTAaggaaatcgaatgttttga
gcgtttaattcgaatgtttttgttttttttgttgagcGAGGAGTCACGAA
GCACAAAACAAGAGTCTTCTTTTACttggaattatttttaaatttttaaa
tttctgttAGTTTGAGCTTTAAACCATAGTAGTTATTAATTATACCAAAG
cacaaaaaaggtttttttatgaCTGTTTATGAGCTTATTCCGGGTCATTT
AGAGCCGAAAACAGGGGGAATCACTCTTTTCTATGTAAAGCAAATAGTAT
CAGAGGCAGTCAGAGGTGCTTACTGCTTAATTAGGGGTGGTATTCAATTT
TGGACCCCAAATGCAGTTAGTACTTTAGGGTACTAACTGCAGAAGGGTGG
TGggtgtatttcaaaatttggattttgcagttagtacacaTAGTGTCTGT
Tactaactgcatgacccccccctgtatgtgttataaataaataatttaaa
atatttttatgtaaatgttatgtttttataataaatatataaaatgataa
aaataataaatatgttGGTTATGATAAATGATATAACTTTAGTAATACAC
AAAGTCTTCGTGAAGAAGAGCTCTTCCTGTCATTTTGAAATTAACTTTTT
CAAGGCAgtcagattttttcagatccttcttgaaagatttgaaattgtcc
atttttttaattctgtcTGGGATATTGTTCCATACAATAGCATTTCTGTA
GCGAAATGAACGTTTAAAAGCAACATATTTGAATGGAGACATATCGATTT
TCAGTGTATTGCGAGACTTTCTTGATTTCGTTTTAACAATCAGGTTAGAG
AGTAATGGAGAACCAAGGTTGTTATGTATCTTATAAACTTAACATGCAAT
ACTTCGCTTGTAATAATAGATAATGGGTTTCCATTTGACACTGGCTAGGA
CAGCATTATCACGAACAGACTTTTTGACTCGATTTATGAACCGTGTATCC
TTTATGTGGACATTCTCGACATACGACATAAGATTCTCAGAACAATTTCC
CCAAATGAGTATACCTTAGATAACAGAGGGTATTATGCCTTGAAAATATA
TTGTTGATAAGGTAGGGTGTGGCATGTTTCTCATTTGATAAAGTTTCTTC
AGTTTACTACTAAAAGATTTGGTAATTTTTCAAACATGCTCCTCCCATTC
CAACTTGTCATCAATAGTATTTCCCAGACATTTGGTGGAGCTAACAATCT
CAACAATTGCTCTACATAGTGTAATGTTTTTGTATGGACCAATGAAACGA
TTTCTTGACATGACCAAGATTTTGCATTTATCAGGGTGAATTGTTAAGGA
GTTTCGTTTGGCATAACTCTCTAATTGACAAGCACTGTTTGGGAGGCTGT
AAATACAGCATCAGCAGTTGGTTCAGTGGTATAGGTTGTTGAGTCATCTG
CAAGCTGGTCTAAATCACTTTCAATACAATCACTCGTATCGTTTACGTTA
ATGGAAAAACTTGGTGGTCCAATTAGAGATCCTTGCGGAACACCATATTC
GACCGTCTCAAGGTTGGACTCGACTCCATTTAGTGATGTGAAGAGCAAAC
CAGGTGTTCAACAACTTTTCTAGGGATTGACAATAGCGATATTGGTCTAT
AGTTTGAGCAGTCTGATTTGACACCTTCTTTGTATACTGGTGTTACTTTA
GATGCTTTCCACTTTGCTAGGAAAGTACCTGTGTTTAAGCTTTGCTTGAT
GACGTAATGAAAACTATTGATTGATCCATCAGTAAGAAGGCAAATATCTT
TGGCTGGTGTTTGGTCTGGTCCACCGGATTTACCAATTTTCACAGCAGAT
TTAAACaatttggtcaaaaattcttttaaatagtcaattttgtcaattgt
tgGGGTTATGCGATAAACATACGAATTGGTAGTCCCACCCATTCATTTTC
GTCTTTTTATTACTCTTGAGTGGTCCAATATTAGAGTCATTTGACTTTCC
TTTAAACTTTTTGACTAGTGACCAGAACGATTTCGAAGAGTCGTTTTGGA
TGAATTTGTTCTCCCAGTATTTTGCTTTTTCTGATCGAATTAAACTGGTT
CATCTATTCATTGCTTTCCTGTACTCCTCCcacttttttgaatgttttgg
ggTAGTTCTTGCAATGTTCGAGAGAACATACAAGCTATATacaatttttg
gcattttcccTTGAGAATGGGCGGCTAAGGGGGGCTACAGCCCctccact
ttttttcaaaaaaaaaaaaagagagaaagctTCCTCTTGTAAATACTTCT
ACTTCGTGCACACGTGAAAGATCTTTTTTACAGCATGCAGGATATGAAGA
CTTGGCTACGTTCAACATTGAAGCCAAAACGGTTTAACAATCTTTCTTTG
CTCCGTATCCATAAAAAGCTAGCGGATAAACTTGATTTAGATGAAGTTGG
TAGAGAGTTTGTGTCGACTCGAGAACATCACTTTAATTACTTTggacaat
tttaattttgattactagtccgggagccaaatcctatatctccttaaata
agcacttttgcttaacccaagattctacaggataaactatacatttttgg
aatcctcaactatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNgcaacaactaccaagaagtggtgtatttaccccctgatttgc
ccacagtgaccgtgaatacagacaatgaaaaccacaaataactctcccat
tgctcctactacaaaatgatccttgtttcagtggtcagaaataaaattgg
tacaccataaaaccgctttatgggtgaaataggtccaaaaacgataaaaa
tcgcctaaaatgggcatttttaccccctggtttgtccatttgcaccctgg
tattgttagttttaagtctgcattgtaatctttcaggatatattacacga
aaatcaagttaaaactatttttgatgacgttttaacaaagattagtggtg
aaaattgctcaaataaggtaaaaacccataaaaatgggcaattttacccc
ctgcagccctgaaataatactaataatactGTCTGTTTGAANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaa
tttttctgatgtattgcatcaaagtctatcataacacctagtttgtgtct
cattaaaagttgtttgggtaggtcccagacttaaaaagggtcaaaattta
gttgaaATACccaatttttcccttttttttcccaggcaaacctataaaaa
taatttttcacaaagattttttgccaaaaataatcatcagcctaccttga
aactttttgcaaagtttcaaagcaattggtcgactgattgactagataca
gcaaattatatcatccctggaatggtattttccttaacaaattcttacaa
agggtaaaaagtaccccctaaactcgggcccagtatgaaaaattgacctg
gagttagctttggggaccgaccatttccaaaactaggatagttgaggatt
ccaaaaatgtatagtgtatcctgtagaatcttgggttaagcaaaatgccc
ttttttgggtttggctcccggactatacTGTATGCTTATTAAAAGCATAC
TCTAAATCTACTATTACTTATGAACTTTGAACAGGTAAAAAAACTCCTCT
TTAAATACTTATAGGTTTCATCTTGTTATTATATAGTAGTATATCCTTTG
GTGATTATCAGTATAAAAAGACACCTgacttctttgattttttcattcta
ataacttcataaaaattaaatttagaccACTTCTAAGCCAATATAGACCA
CTTCTAAGCCAATGTAGAGTAccataatttcaaaacttttccgGCCCGTC
CGCCCCAACCATGGTgacgcctccttagtcactatatcaTTTAGCCCCCT
CACTTTTAAAAGTCATTCGCCGGCCCTGCTTTGTagaaagaagaattttt
tagcaaaatcgaTACTGGACCTGTTGACAGATTTGGCGTAAAGCTTAACT
TCTTCAATACATTAGGCATAATTCATTGAATACTATTTGATAACTAAGAT
AGAGTTACAGTAATATGGTATTTCATTTTATAAATAGTAAAAGAGTTTTT
TCTACTGCAATTGAGTAGTCAAAGCCTAAATCTTTGTGTAcgcacttttt
tttttataagaatggtgtaaatcaatttcatcatggatattcttaacttt
tttgggaaaatcatcctaaaatattcttacagcacattcttaagttagga
tcctgactcatactagatttaacatttagtgaatgcgtctcaagcataaa
atgacatttttgtgaaagaagcgagccttacttgggggtaattgacaatt
tataatcgaaaatcctctaaaaatgacattcttagctcgAGTAGCAaatt
tccatgatggtgatattcttagcattattcttaatttttttggccatttt
tatcatAGACATTCTTATACTTAAAAAAGCCGCAtgatgatttttccaaa
aaaagttacagaatattcgatgaaatggatttacaccattcttataaaaa
aattatgtaatCTTGTAAAACATTTCATTCTTCTATTTATCAATAGCATT
TGGAGAGGAGTATTCAATCCAATATTGAACAACAGCTTGTACAAAAAGCC
GGACCTGAAAGTCTAAGTCTTGTTAAAGCACCAGAAACCAGTACTTCAAC
CAGCGCTGGtggtaaatcaaaacaaaccaagaAATAACAACAGCAAATGG
AATCCATTGTGAAGAGTTATGATTTAATACAGGAGAAGGTCAGCTGGTTA
TTTCCTTTCAATTACTTCGGTTTATTCACATTAAAAAGCTGACTGTGCTT
TTGAAGCATTCTGGTCCGCTTTTTGTCAAAGTGAACAGATTTTCGAAATC
TACAAAATTAGCATTATTTTCTTCACAAAGaagttattatttatttattg
ctAAATAATAAGCTAATAAAGTAGACTCTGATTTTTAAGGGTATAATTTT
TACATATCGAAAACAATTTTatattcagatttttaaaatttggtgtCATT
TTTACATGAAATAGTCTTTTATCAAGTGAAAAGATTGTCGAAATGCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057190-exon-scaffold_286-1491911889:549872..550148 | TCONS_00057190-exon-scaffold_286-1491911889:549872..550148 | Clytia hemisphaerica | exon |
| TCONS_00057190-exon-scaffold_286-1510915933:549872..550148 | TCONS_00057190-exon-scaffold_286-1510915933:549872..550148 | Clytia hemisphaerica | exon |
| TCONS_00057190-exon-scaffold_286-1575043694:549872..550148 | TCONS_00057190-exon-scaffold_286-1575043694:549872..550148 | Clytia hemisphaerica | exon |
| TCONS_00057190-exon-scaffold_286-1491911889:551387..551445 | TCONS_00057190-exon-scaffold_286-1491911889:551387..551445 | Clytia hemisphaerica | exon |
| TCONS_00057190-exon-scaffold_286-1510915933:551387..551445 | TCONS_00057190-exon-scaffold_286-1510915933:551387..551445 | Clytia hemisphaerica | exon |
| TCONS_00057190-exon-scaffold_286-1575043694:551387..551445 | TCONS_00057190-exon-scaffold_286-1575043694:551387..551445 | Clytia hemisphaerica | exon |
| TCONS_00057190-exon-scaffold_286-1491911889:557918..558419 | TCONS_00057190-exon-scaffold_286-1491911889:557918..558419 | Clytia hemisphaerica | exon |
| TCONS_00057190-exon-scaffold_286-1510915933:557918..558419 | TCONS_00057190-exon-scaffold_286-1510915933:557918..558419 | Clytia hemisphaerica | exon |
| TCONS_00057190-exon-scaffold_286-1575043694:557918..558419 | TCONS_00057190-exon-scaffold_286-1575043694:557918..558419 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_286 | supercontig | scaffold_286:549872..558419 + |
Blast
The following BLAST results are available for this feature:
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