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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057189 ID=TCONS_00057189|Name=TCONS_00057189|organism=Clytia hemisphaerica|type=transcript|length=807bp
AATGGCCTTCATTAATGTGCATTACGgagaaaatgaaagattGTTGATCA
ACCTAAATTGTTGCATTGGAAACCTTGTCCATTGGATCAAAGCAAGATCG
AACTATAGAAATGTTGACATCGATTTGGTTGATGATATTGgaacccttca
aaatttgacaacTCTCGATTCAGATCTTTATGCTGTTGATCGCCTAAAGA
ATAGGAATGATTATATACTTGTTCAGATTGAAAAGGATGACAAGAACAAA
CTAACAATCACACCTCTCATGGAGAATCTGGAACTGGTAAATCCGAAACT
GATAGagaAACTTCACGAGCAAGCTCTTTCACGATCCAAACTCCAATCAC
AAAAAAGCACAGACCTAAACCACGCATCTTTATCAAGCGCAGCCGTAGCA
GCAATGTCTTTTAGACGTCAACCATCAGGTTCAGTTTCCAATCGCAGCCA
ATCACCAAACAGCACCACAAGTTATAAATCAAGTCGATCCAAGAAAAGAA
GTGTTATCAAGAAATAATGTTCTCATACTCGCTTaaaaatgttcactcaa
aaatattcaatacactttttcgaccgtatttccacgggcatttttttgtc
cactttatccCACAAATACcatcccaatccttttttgacgtatttttcta
ttgtctatatgtgcgaaaaaaggacttggacggttttagtgggataaagc
gaaTTGGTGACTACGGTCGCAAAGGTGTATTTTCACAACCATgttcccgt
gtatcccaggctttatttatgcTACTGATGAACGCCAGATGATAATCTAG
CAATATA Run BLAST on NCBI protein sequence of Conserved uncharacterized CXorf65-related protein >TCONS_00057189-protein ID=TCONS_00057189-protein|Name=Conserved uncharacterized CXorf65-related protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
MAFINVHYGENERLLINLNCCIGNLVHWIKARSNYRNVDIDLVDDIGTLQ
NLTTLDSDLYAVDRLKNRNDYILVQIEKDDKNKLTITPLMENLELVNPKL
IEKLHEQALSRSKLQSQKSTDLNHASLSSAAVAAMSFRRQPSGSVSNRSQ
SPNSTTSYKSSRSKKRSVIKK Run BLAST on NCBI transcript from alignment at scaffold_286:494366..500530+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057189 ID=TCONS_00057189|Name=TCONS_00057189|organism=Clytia hemisphaerica|type=transcript|length=6165bp|location=Sequence derived from alignment at scaffold_286:494366..500530+ (Clytia hemisphaerica)
AATGGCCTTCATTAATGTGCATTACGgaggtatgtttttttttactgagG
GAAAAATGGAATATGTATAAGAGTTGCAAAGTGATCAAGATGCCAGAGGA
GCTCGAACCCGGGGGGGGgaggcactcatatgatctgacCCACGGCATGC
ACCACCCTTAaaggtaggtttttcgagacacTCGAAATGTattgtaaggg
tgtacttttgatagagtgcacttcaagagtcttcttttagctggatatac
tgtaagggtatgtttggggactgctgaattgcaggtttgacaataaaaat
ttgattttcactcgcacccattttgatttgttttgtacATTGTGTTGACA
TCTCTTGCACATTTTAGGTGGTTTCAgcaaaataagttatgaaatcaaac
tacacgtttcttttttataagaacaaactataaaagaacaaaaggcttcg
atagccaaaatgttaagaacaagttaagaacattttaaggctttgtagac
tctaaaacatccaattgcttagaaaaatggaaacaattctcaaaaagtag
tgaaaataagaacatgttaagaacatttttaggcttaaaactcaaaaagt
taagaacatccaaaggcttcagaaattttggatgttctaataaaaaaaca
tgtacactGTGGTAATGAACattcggtaaaatgcactgtaagggtacctt
ttcactgctcaagggctgcactgtaaggtccgactttagaatcttttttt
ggTTTGATTAGAAATCGAGTGCACACTCTTCCTCCCCCCTTCCTCCGGGT
GCTCGAAGTATGAGTTCATGCTCGAAATTGTGAgcaacaaaaatgcaaaa
tacaCAAGAGTACGAGTTTGGATGGCACGAACGCGTCAACATCACAAATC
TTTCAGTGCATGAAATTTGCACATTTCCTATCTCCCCATATCTTTCTAAT
ATGCGCAAAACCGCCACTTCTATCAATAGATATAGCCCTTTTTGTCTTCG
CTGCAAATTACATTGAGACAGAACTtgctactttttttttttagaaaatg
aaagattGTTGATCAACCTAAATTGTTGCATTGGAAACCTTGTCCATTGG
ATCAAAGCAAGATCGAACTATAGAAATGGTGAGAATTTCGACTTTTCCAC
CCTACCGGGTTTTAGGAAAATTACCTGAAATCACCCTCATTAGAAAAATA
CACTAAGTCTTTCATTCTCACACGCAGGAACATAAAAAGGTTGAGAACCC
TTACTAAATTCTTGTAAAAGTAGGGAGCAAATCATTGGATTTTCCAtgct
tcaatcttttttataacAAAATAGATAAGTAATGCTAGTGTGCTCAAATG
TAAGAGGAGCAGACCCTGAAGACATAGATCTGTAACCCGAGGGGAGATAT
GTGCTGGGAATGTGTGAGCAATAAAGGTTGTTTTTACCTTCCTAAGTCTc
cctaagggttacaaaaacagcaaaagtcaaaatagtCTATGTAaggatcc
cgggggggggggggactagggttggggggggggggggtactaggtttgcg
aggtgacgggtatgtccactaacggattcgtgctccttatagtaCTACTA
TACggctacctggggttttgtagaggtctgcgatttagACTAGGGTCCTT
TAAGGGTACAAAAACAATGGACCCTCACGGGTGTGTTAAACGATCGAAAG
CATTTGGGCCAGTGATTTTCTCAAGTGCAGCAATTGCACCAAAATATACG
CCAATCATGTAAATGACATTGAAACCACTAAGGTTTATAACAGTTAGTAA
TTGAAGCCCAGTCGCTTCTACTTTGTGCTTCCAGGTGAAATGAACTGGCA
GAATAAATGGTCTgtcattaaaggttttgttcttaaataagagtgatatc
gtttgcttactcgtcaattttaattcacaagctttttcacattgcaTTGA
CACgcatgtggagcaagattggtcagaaagaggaaaagaaaaagattttt
gcttatctttagtttttaaatcaaaaattataaatgaaaatattacatTT
CATACCTTTCTTTATCTTTCAGTTGACATCGATTTGGTTGATGATATTGg
aacccttcaaaatttgacaacTCTCGATTCAGATCTTTATGCTGTTGATC
GCCTAAAGAATAGGAATGATTATATACTTGTTCAGATTGAAAGTAAGTTA
TTTACTGATGCTTTAGGGGAGCTCAGCCTAGCTAACAAAACCCGTACTCG
CCATAGTCCGTATataaaaccccggtctggaagccttttgtttctttcca
ttgtttcttacttgaacttgtgttgagaaattagtttgttttgctcactt
tttgatcatgtgattagattttaaaccaatcccaagaggagtacttggta
aAGTGATCAAAAACTAagcaaatcgattttcatctttgaataataacaaa
gaaataaaagctaacaaaaagttaaaaaataagcttccagaccagtgcTT
TTTATAAGGACTTATGTATTCATAAAGACACACGGCTTAgacaatatagc
gttttcggcgctttagagactttttttataattaaaGACTGGATTAAACT
AGCTTTGGTCTTTAGGCTGAGGGGAACTCTCATTCTTATCTATTAGTCct
gccttttcaaaaattttccaccaagACATTCTAATTTTAACTTACTACTT
CTCAAAAGGggcaaatcacaaaattaatcaacaaaaataaatcagaacct
catgtatcaaatttttgtgtgatttagCCCTTGCTGCCATTTCAGTAAGT
TCGAaaataatttcataaaaaagttcAAGCTTCCTTTGGGACTTTATTTT
ACGGATAACACCGAAACTTATGAAATTCATTTTGAGAATGATGAAAACTA
AGTTTAGCAGTAGGTTCGTCTTACAAATCCTgccattgtaacacgcatgc
gtaatttgtcgttcttttaaaccacatgtagttgATTCCCGTGATCAACA
AGGATGAATCCGAGAGGAGgcacagtcactttcggtcggggtagTGGACA
GCAAAAGTTGTCGTTCTGTATGAAATtcgtcgttctttttgtctattttt
agtaatgcaggatttgttACATGGACTCCCTCCTAGTTTTTAACTTCCCT
TTTTTTCTTGTTGCTTATAGAGGATGACAAGAACAAACTAACAATCACAC
CTCTCATGGAGAATCTGGAACTGGTAAATCCGCAACTGATAGGTATGTAT
AATTCACATATTTTACTTAATTTAATGCCCCCCCCACAGTGGTTTGCGca
aatgcgtgaatgggctttttcacttacGCGAATGcgcgaaaatgaaaaaa
taaattgcgTGAATGTAtgaattggaaaactttgcgtgaacaaacattgc
gtgaattgcgaaaaaacattgcgtgatTGTGTGATTTGAAGGTCCGCTGG
AAGGCTATTTTTAAAATAGAATCTTTTACCATCTTAACGAATATAACCTC
CACTACGGCGAAGATGAAATAGATGAAATATAGAGTTTCATAATCGCACA
TCTATCCTTAGTAAGCAGTTAAATTGGTCATGTCTTAATAAATTCCACCT
TGCTGCCATTTCGGTAAGttcgaaaataatttcaaaaaaaagttcaagCT
TCCTTTGGGACTTTATTTTACGGATAACAGCGAAACTtatgaaattcatt
ttgaaaatgatgaaaactaAGCTTAGCAGTAGGTTCGTCTTACAAATCCT
gccattgtaacacgcatgcgtaatttgtcgttcttttaaaccacatgtag
ttgATTCCCGTGATCAACAAGGATGAATCCGAGAGGAGgcacagtcactt
tcggtcggggtagTGGACAGCAAAAGTTGTCGTTCTGTATGAAATtcgtc
gttctttttgtctatTTTTAGTAATGCAGGATTTGTTACATGGACTCCCT
CCTAGTTTTTAACTTCCCTTTTTTTCTTGTTGCTTATAGAGGATGACAAG
AACAAACTAACAATCACACCTCTCATGGAGAATCTGGAACTGGTAAATCC
GCAACTGATAGGTATGTATAATTCACATATTTTACTTAATTTAATGCCCC
CCCCACAGTGGTTTGCGCAAATGCGTGAATGGGCTTTTTCACTTACGCGA
ATGCGCGAAAATGAAAAAATAAATTGCGTGAATGTATGAATTGGAAAACT
TTGCGTGAACAAACATTGCGTGAATTGCGAAAAAACATTGCGTGATTGTG
TGATTTGAAGGTCCGCTGGAAGGCTATTTTTAAAATAGAATCTTTTACCA
TCTTAACGAATATAACCTCCACTACGGCGAAGATGAAATAGATGAAATAT
AGAGTTTCATAATCGCACATCTATCCTTAGTAAGCAGTTAAATTGGTCAT
GTCTTAATAAATTCCACCTTGCTGCCATTTCGGTAAGTTCGAAAATAATT
TCAAAAAAAAGTTCAAGCTTCCTTTGGGACTTTATTTTACGGATAACAGC
GAAACTTATGAAATTCATTTTGAAAATGATGAAAACTAAGCTTAGCAGTA
GGTTCGTCTTACAAATCCTGCCATTGTAACACGCATGCGTAATTTGTCGT
TCTTTTAAACCACATGTAGTTGATTCCCGTGATCAACAAGGATGAATCCG
AGAGGAGGCACAGTCACTTTCGGTCGGGGTAATGGACAGCAAAATTTGTC
GCTCTGTATGAAATTCGTCgtttctttttgtctatttgtagtaatgcagg
atttgttACATGGACCCCTCCTAGTTTTTAACttcccttttttcttttta
cttatAGAGGATGACAAGAACAAACTAACAATCACACCTCTCATGGAGAA
TCTGGAACTGGTAAATCCGAAACTGATAGGTGTGTATAATTCAAATATTT
TACTTAATTtaatgccccccccccagtggtttgcgcaaatgcgtgaatgg
gctttttcacttacGCGAATGCgcgaaaacgaaaaaaaaattgcgtgaat
gtgtgaattggaaaactttgcgtgaacaaaaatttcgtgaattgcgaaaa
aacattgcgtgatTGTGTGAATTGAAGGGCCGCTGGGAGGCTCTTTAATA
GAATCTTTTACGATCTTAACGAATATAACCTCCACTACGGCGAGGATAAA
ATATAGAGTTTCATAATCGCACATCTATCCTTAGTAAGCAGTTAAATTGG
TCATGTCTTAATAAATTCCACCTTTCAATACAATGGaaactttaactcga
acctctaacTCGGATATCTCCttaagttttctcgtcccttcgcAGTAAGC
ACCTTGTAAAgggatgccttggagtttttaaaagatgtttaactgattgg
ttatttttaaacaatagggatgacgcgttctttagaaaaagtaataaaat
tgtttgtctcaacatttaacgaccaacagagtcatcaaagaacttgtaaa
aaatCCAGCTTGACCCCTTGTAAACATTACTCTATAACTAGAAATTTCCA
TAACTCGGACAATTTGTATTTCCCGTGTGTGTTTGGAAACTCTACACTAA
AAGTGTTTAACTTTTCGTTGATGTTGGACAAAAAAGGTAAACTGGAGTCG
TTTACAATGCTGGTGACAGATTCCATTCCATTGTTAAAAACGtcgaaata
tttcttttttcagagaAACTTCACGAGCAAGCTCTTTCACGATCCAAACT
CCAATCACAAAAAAGCACAGACCTAAACCACGCATCTTTATCAAGCGCAG
CCGTAGCAGCAATGTCTTTTAGACGTCAACCATCAGGTTCAGTTTCCAAT
CGCAGCCAATCACCAAACAGCACCACAAGTTATAAATCAAGTCGATCCAA
GAAAAGAAGTGTTATCAAGAAATAATGTTCTCATACTCGCTTaaaaatgt
tcactcaaaaatattcaatacactttttcgaccgtatttccacgggcatt
tttttgtccactttatccCACAAATACcatcccaatccttttttgacgta
tttttctattgtctatatgtgcgaaaaaaggacttggacggttttagtgg
gataaagcgaaTTGGTGACTACGGTCGCAAAGGTGTATTTTCACAACCAT
gttcccgtgtatcccaggctttatttatgcTACTGATGAACGCCAGATGA
TAATCTAGCAATATA Coding sequence (CDS) from alignment at scaffold_286:494366..500530+ >TCONS_00057189 ID=TCONS_00057189|Name=TCONS_00057189|organism=Clytia hemisphaerica|type=CDS|length=2580bp|location=Sequence derived from alignment at scaffold_286:494366..500530+ (Clytia hemisphaerica)
ATGGCCTTCATTAATGTGCATTACGgagaaaatgaaagattGTTGATCAA
CCTAAATTGTTGCATTGGAAACCTTGTCCATTGGATCAAAGCAAGATCGA
ACTATAGAAATGTTGACATCGATTTGGTTGATGATATTGgaacccttcaa
aatttgacaacTCTCGATTCAGATCTTTATGCTGTTGATCGCCTAAAGAA
TAGGAATGATTATATACTTGTTCAGATTGAAAAGGATGACAAGAACAAAC
TAACAATCACACCTCTCATGGAGAATCTGGAACTGGTAAATCCGAAACTG
ATAGagaAACTTCACGAGCAAGCTCTTTCACGATCCAAACTCCAATCACA
AAAAAGCACAGACCTAAACCACGCATCTTTATCAAGCGCAGCCGTAGCAG
CAATGTCTTTTAGACGTCAACCATCAGGTTCAGTTTCCAATCGCAGCCAA
TCACCAAACAGCACCACAAGTTATAAATCAAGTCGATCCAAGAAAAGAAG
TGTTATCAAGAAATAAATGGCCTTCATTAATGTGCATTACGgagaaaatg
aaagattGTTGATCAACCTAAATTGTTGCATTGGAAACCTTGTCCATTGG
ATCAAAGCAAGATCGAACTATAGAAATGTTGACATCGATTTGGTTGATGA
TATTGgaacccttcaaaatttgacaacTCTCGATTCAGATCTTTATGCTG
TTGATCGCCTAAAGAATAGGAATGATTATATACTTGTTCAGATTGAAAAG
GATGACAAGAACAAACTAACAATCACACCTCTCATGGAGAATCTGGAACT
GGTAAATCCGAAACTGATAGagaAACTTCACGAGCAAGCTCTTTCACGAT
CCAAACTCCAATCACAAAAAAGCACAGACCTAAACCACGCATCTTTATCA
AGCGCAGCCGTAGCAGCAATGTCTTTTAGACGTCAACCATCAGGTTCAGT
TTCCAATCGCAGCCAATCACCAAACAGCACCACAAGTTATAAATCAAGTC
GATCCAAGAAAAGAAGTGTTATCAAGAAATAAATGGCCTTCATTAATGTG
CATTACGgagaaaatgaaagattGTTGATCAACCTAAATTGTTGCATTGG
AAACCTTGTCCATTGGATCAAAGCAAGATCGAACTATAGAAATGTTGACA
TCGATTTGGTTGATGATATTGgaacccttcaaaatttgacaacTCTCGAT
TCAGATCTTTATGCTGTTGATCGCCTAAAGAATAGGAATGATTATATACT
TGTTCAGATTGAAAAGGATGACAAGAACAAACTAACAATCACACCTCTCA
TGGAGAATCTGGAACTGGTAAATCCGAAACTGATAGagaAACTTCACGAG
CAAGCTCTTTCACGATCCAAACTCCAATCACAAAAAAGCACAGACCTAAA
CCACGCATCTTTATCAAGCGCAGCCGTAGCAGCAATGTCTTTTAGACGTC
AACCATCAGGTTCAGTTTCCAATCGCAGCCAATCACCAAACAGCACCACA
AGTTATAAATCAAGTCGATCCAAGAAAAGAAGTGTTATCAAGAAATAAAT
GGCCTTCATTAATGTGCATTACGgagaaaatgaaagattGTTGATCAACC
TAAATTGTTGCATTGGAAACCTTGTCCATTGGATCAAAGCAAGATCGAAC
TATAGAAATGTTGACATCGATTTGGTTGATGATATTGgaacccttcaaaa
tttgacaacTCTCGATTCAGATCTTTATGCTGTTGATCGCCTAAAGAATA
GGAATGATTATATACTTGTTCAGATTGAAAAGGATGACAAGAACAAACTA
ACAATCACACCTCTCATGGAGAATCTGGAACTGGTAAATCCGAAACTGAT
AGagaAACTTCACGAGCAAGCTCTTTCACGATCCAAACTCCAATCACAAA
AAAGCACAGACCTAAACCACGCATCTTTATCAAGCGCAGCCGTAGCAGCA
ATGTCTTTTAGACGTCAACCATCAGGTTCAGTTTCCAATCGCAGCCAATC
ACCAAACAGCACCACAAGTTATAAATCAAGTCGATCCAAGAAAAGAAGTG
TTATCAAGAAATAAATGGCCTTCATTAATGTGCATTACGgagaaaatgaa
agattGTTGATCAACCTAAATTGTTGCATTGGAAACCTTGTCCATTGGAT
CAAAGCAAGATCGAACTATAGAAATGTTGACATCGATTTGGTTGATGATA
TTGgaacccttcaaaatttgacaacTCTCGATTCAGATCTTTATGCTGTT
GATCGCCTAAAGAATAGGAATGATTATATACTTGTTCAGATTGAAAAGGA
TGACAAGAACAAACTAACAATCACACCTCTCATGGAGAATCTGGAACTGG
TAAATCCGAAACTGATAGagaAACTTCACGAGCAAGCTCTTTCACGATCC
AAACTCCAATCACAAAAAAGCACAGACCTAAACCACGCATCTTTATCAAG
CGCAGCCGTAGCAGCAATGTCTTTTAGACGTCAACCATCAGGTTCAGTTT
CCAATCGCAGCCAATCACCAAACAGCACCACAAGTTATAAATCAAGTCGA
TCCAAGAAAAGAAGTGTTATCAAGAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057189-exon-scaffold_286-1491911889:494366..494394 | TCONS_00057189-exon-scaffold_286-1491911889:494366..494394 | Clytia hemisphaerica | exon |
| TCONS_00057189-exon-scaffold_286-1510915933:494366..494394 | TCONS_00057189-exon-scaffold_286-1510915933:494366..494394 | Clytia hemisphaerica | exon |
| TCONS_00057189-exon-scaffold_286-1575043694:494366..494394 | TCONS_00057189-exon-scaffold_286-1575043694:494366..494394 | Clytia hemisphaerica | exon |
| TCONS_00057189-exon-scaffold_286-1491911889:495410..495493 | TCONS_00057189-exon-scaffold_286-1491911889:495410..495493 | Clytia hemisphaerica | exon |
| TCONS_00057189-exon-scaffold_286-1510915933:495410..495493 | TCONS_00057189-exon-scaffold_286-1510915933:495410..495493 | Clytia hemisphaerica | exon |
| TCONS_00057189-exon-scaffold_286-1575043694:495410..495493 | TCONS_00057189-exon-scaffold_286-1575043694:495410..495493 | Clytia hemisphaerica | exon |
| TCONS_00057189-exon-scaffold_286-1491911889:496438..496557 | TCONS_00057189-exon-scaffold_286-1491911889:496438..496557 | Clytia hemisphaerica | exon |
| TCONS_00057189-exon-scaffold_286-1510915933:496438..496557 | TCONS_00057189-exon-scaffold_286-1510915933:496438..496557 | Clytia hemisphaerica | exon |
| TCONS_00057189-exon-scaffold_286-1575043694:496438..496557 | TCONS_00057189-exon-scaffold_286-1575043694:496438..496557 | Clytia hemisphaerica | exon |
| TCONS_00057189-exon-scaffold_286-1491911889:499173..499244 | TCONS_00057189-exon-scaffold_286-1491911889:499173..499244 | Clytia hemisphaerica | exon |
| TCONS_00057189-exon-scaffold_286-1510915933:499173..499244 | TCONS_00057189-exon-scaffold_286-1510915933:499173..499244 | Clytia hemisphaerica | exon |
| TCONS_00057189-exon-scaffold_286-1575043694:499173..499244 | TCONS_00057189-exon-scaffold_286-1575043694:499173..499244 | Clytia hemisphaerica | exon |
| TCONS_00057189-exon-scaffold_286-1491911889:500029..500530 | TCONS_00057189-exon-scaffold_286-1491911889:500029..500530 | Clytia hemisphaerica | exon |
| TCONS_00057189-exon-scaffold_286-1510915933:500029..500530 | TCONS_00057189-exon-scaffold_286-1510915933:500029..500530 | Clytia hemisphaerica | exon |
| TCONS_00057189-exon-scaffold_286-1575043694:500029..500530 | TCONS_00057189-exon-scaffold_286-1575043694:500029..500530 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_286 | supercontig | scaffold_286:494366..500530 + |
Blast
The following BLAST results are available for this feature:
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