TCONS_00057188 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057188
Unique NameTCONS_00057188
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length247

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057188 ID=TCONS_00057188|Name=TCONS_00057188|organism=Clytia hemisphaerica|type=transcript|length=247bp
CACCTTATCTTAAAAATGGCAGAAAAAGATATATTCTTACTGGACATTCT
TTGGGAGGAGCTTTGGCATCGTTGCTGGCATTGAAAACAAGGTTTTATTA
TGGTGCTGTTTGGAGGAGTTCAAAATCAAGTTTGATAACATTTGGTCAAC
CAAGAGTCGGGAATGCAGCATATGCGGACCTTCATGATCAGATGGTACCG
AAGTTTAGAAAGTTAAGATTTGTTTACAAGTCAGACCCTATTACTAA
Run BLAST on NCBI

transcript from alignment at scaffold_286:491307..491896+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057188 ID=TCONS_00057188|Name=TCONS_00057188|organism=Clytia hemisphaerica|type=transcript|length=590bp|location=Sequence derived from alignment at scaffold_286:491307..491896+ (Clytia hemisphaerica)
CACCTTATCTTAAAAATGGCAGAAAAAGATATATTCTTACTGGACATTCT
TTGGGAGGAGCTTTGGCATCGTTGCTGGCATTGAAAACAAGGTTTTATTA
TGTAAGGATAATACAATATTGGGAGTGGTGGGATTTCCAAGTAACTGGGT
TAAAGTGTCTCTCTATTCCTCGAATATCTCTTTATATATGGCTGGATAGC
TCAATCGGTAGAGcatttggcttaaaatctacGGGTTGTGGGTTCGCTCC
CCGATCATGTTTCACGGGTCCCAAGAAAGTCTAAAGCTAAAAGCCGAGCT
TCAGTTTTCAGAAAACGGCGTATTAAGAACGCTTTTCAGTAcatttaagc
cttaaaataacAACAGTCAAAAGCCAGGCCTCAGCCAAAATTTGCTAGTT
CTCATACAAAAACCAATACCATAAACCATATGTTTTATCTCCAGGGTGCT
GTTTGGAGGAGTTCAAAATCAAGTTTGATAACATTTGGTCAACCAAGAGT
CGGGAATGCAGCATATGCGGACCTTCATGATCAGATGGTACCGAAGTTTA
GAAAGTTAAGATTTGTTTACAAGTCAGACCCTATTACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036038XLOC_036038Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057188-exon-scaffold_286-1491911889:491307..491407TCONS_00057188-exon-scaffold_286-1491911889:491307..491407Clytia hemisphaericaexon
TCONS_00057188-exon-scaffold_286-1510915933:491307..491407TCONS_00057188-exon-scaffold_286-1510915933:491307..491407Clytia hemisphaericaexon
TCONS_00057188-exon-scaffold_286-1575043694:491307..491407TCONS_00057188-exon-scaffold_286-1575043694:491307..491407Clytia hemisphaericaexon
TCONS_00057188-exon-scaffold_286-1491911889:491751..491896TCONS_00057188-exon-scaffold_286-1491911889:491751..491896Clytia hemisphaericaexon
TCONS_00057188-exon-scaffold_286-1510915933:491751..491896TCONS_00057188-exon-scaffold_286-1510915933:491751..491896Clytia hemisphaericaexon
TCONS_00057188-exon-scaffold_286-1575043694:491751..491896TCONS_00057188-exon-scaffold_286-1575043694:491751..491896Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_286supercontigscaffold_286:491307..491896 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.967709	33.8758	22.6587	3.25824	43.3722	0	0	2.28269	0	0	0	0	0.894351	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057188 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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