TCONS_00057187 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057187
Unique NameTCONS_00057187
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length268

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057187 ID=TCONS_00057187|Name=TCONS_00057187|organism=Clytia hemisphaerica|type=transcript|length=268bp
TGTAAATGGGGTTTTGATTTTGGTTTTTGTATCTATTGCCAATTCATGCC
CGAATTATTCGACCGTCATCCGAAAATCAGATGTTTTACACGCTGTCTAT
GCTTCAAGACAGATTTTCAGTAATGGAAACAAAGCTGGGACTCGAATCTC
CAATACACCTTACAAATTCATCCACCTCATCCAACGCCAATTTTTCAACC
AAGGTGATAGCATCCGTGTTGGAATCGCAGACGATGGAAACAATCGAATC
ATTGTGTTCAGAGGTTCG
Run BLAST on NCBI

transcript from alignment at scaffold_286:489638..490571+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057187 ID=TCONS_00057187|Name=TCONS_00057187|organism=Clytia hemisphaerica|type=transcript|length=934bp|location=Sequence derived from alignment at scaffold_286:489638..490571+ (Clytia hemisphaerica)
TGTAAATGGGGTTTTGATTTTGGTTTTTGTATCTATTGCCAATTCATGCC
CGTAAGTATGTTTTTAAGCTTTTGggttattttttaactttttgggtttt
aaatattattgaaatttcTATGCTTTCACAAGTTTGTAAGCGTGAAACAG
TTTGTagtatgtttcaatttttggttaaaaatcaATATTGATGTTTGGTT
GGACTAATCGAGCACCCTTCCACATAATCCGGGGGGGGTACCTTGACCAC
TGACGGGGACGTGTCGCTGGAGTCTGAAAACTGAACCCTGTTAGAGTGag
attttggtaaatttgggaccttGTCagaatgaaaaatggaaaattttcta
attatCACCCTGAAACATGgcaaaagtgacaaaaaagtagatgagaaatc
gaaaaaaaaatctaatttccaccctgaaaactATCCAAAATAAATAATAG
TCGACCCTGTCGaatacactttttgaaaattactcaatttgggaccctgt
cagatatcttcagagccgaAAAAATGACAAGCGGCATGTCCCTGTAccta
attttgcctaagtgtcTCCCCGGGCATAATATTAATTTAATTGATTGATT
AAGTTTTGTAgcgttttccaaaaaaaaatgataCGTACGTACGTCTTtgg
agccttaaaatgttcagtcatcgaagccttatgttctcatatacttaatt
cttataaaaacgtgcaGGAATTATTCGACCGTCATCCGAAAATCAGATGT
TTTACACGCTGTCTATGCTTCAAGACAGATTTTCAGTAATGGAAACAAAG
CTGGGACTCGAATCTCCAATACACCTTACAAATTCATCCACCTCATCCAA
CGCCAATTTTTCAACCAAGGTGATAGCATCCGTGTTGGAATCGCAGACGA
TGGAAACAATCGAATCATTGTGTTCAGAGGTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036037XLOC_036037Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057187-exon-scaffold_286-1491911889:489638..489688TCONS_00057187-exon-scaffold_286-1491911889:489638..489688Clytia hemisphaericaexon
TCONS_00057187-exon-scaffold_286-1510915933:489638..489688TCONS_00057187-exon-scaffold_286-1510915933:489638..489688Clytia hemisphaericaexon
TCONS_00057187-exon-scaffold_286-1575043694:489638..489688TCONS_00057187-exon-scaffold_286-1575043694:489638..489688Clytia hemisphaericaexon
TCONS_00057187-exon-scaffold_286-1491911889:490355..490571TCONS_00057187-exon-scaffold_286-1491911889:490355..490571Clytia hemisphaericaexon
TCONS_00057187-exon-scaffold_286-1510915933:490355..490571TCONS_00057187-exon-scaffold_286-1510915933:490355..490571Clytia hemisphaericaexon
TCONS_00057187-exon-scaffold_286-1575043694:490355..490571TCONS_00057187-exon-scaffold_286-1575043694:490355..490571Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_286supercontigscaffold_286:489638..490571 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.660311	0	0	0.621468	3.74888	7.72124	46.1952	41.3933	18.907	54.764	0	0	2.98036	0.355376	0	0	0	0	0	0	0	0	0	0.558814	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057187 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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