|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057186 ID=TCONS_00057186|Name=TCONS_00057186|organism=Clytia hemisphaerica|type=transcript|length=753bp
GACTTTTGGTCATCAATCGATTCCGTTTTAAGGAATCCCCTGATCTGGCA
GAGACAGTACTTAAGAAGCAAAACAAACCCAAGAACCACAACGGTTTTCT
CTACTGTAGTattaaaaaagcaaacaaaatgcCGCATATACGAATATTCA
CGAATGTGGCGAGAGACAAATTTGATCAACAATCAATGGAGAAAATGATT
GAAGAAATGGCTGTTATCAATGGCAAACCTGATAAActtttcatgGCATC
TGTGAGTGCTGGAGAAGTATTTGTGATGAACAAATCACAAGAGCCTGCTG
CACATGTCGCGTTTCTTTCCATTGGTAAAATCGATGAAGAATCGAATGCT
AAATATTCCGAAATCCTGTTCAGATTTTTGAACACCAAAGATATTAAAAA
TGAAAGAATTCAATGTACATTTCACAAcgtatcaaaacaaaactttggAT
GGAACAACGCTTTGGTATCCAGACTATTCCCAGACACCCCGAAAACTGAA
ACTCCTCAAGAACCTGCTCAACAATCAACTCAAAACAAAGGGTCTTCAGC
CTGTGTTATATTGTAGTAAGatttaataatttgattgaatCCTAGTTCCA
GTTTTGAAATAttgtaaatatattttcaagaaatttcatgATTTATTCCG
AAAATAGCAGAAAGAAAGAACTTTTGAAAGGTTGTATAAAGTTTCTGAGA
TATGATCTTTTTAACTGTCACTGTCAGAGAAAGGTCAAAAGTTCAGTGAA
ACG Run BLAST on NCBI protein sequence of TCONS_00057186-protein >TCONS_00057186-protein ID=TCONS_00057186-protein|Name=TCONS_00057186-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
LLVINRFRFKESPDLAETVLKKQNKPKNHNGFLYCSIKKANKMPHIRIFT
NVARDKFDQQSMEKMIEEMAVINGKPDKLFMASVSAGEVFVMNKSQEPAA
HVAFLSIGKIDEESNAKYSEILFRFLNTKDIKNERIQCTFHNVSKQNFGW
NNALVSRLFPDTPKTETPQEPAQQSTQNKGSSACVIL Run BLAST on NCBI transcript from alignment at scaffold_286:473310..476096+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057186 ID=TCONS_00057186|Name=TCONS_00057186|organism=Clytia hemisphaerica|type=transcript|length=2787bp|location=Sequence derived from alignment at scaffold_286:473310..476096+ (Clytia hemisphaerica)
GACTTTTGGTCATCAATCGATTCCGTTTTAAGGAATCCCCTGATCTGGCA
GAGACAGTACTTAAGAAGCAAAACAAACCCAAGAACCACAACGGTTTTCT
CTACTGTAGTattaaaaaagcaaacaaaatgcCGCATATACGAATATTCA
CGAATGTGGCGAGAGACAAATTTGATCAACAATCAATGGAGAAAATGATT
GAAGAAATGGCTGTTATCAATGGCAAACCTGATAAAGTAAGTGAGTAGCT
TTTTCATTTGGGTACATCCCTATACCCTGACTCTTTATTGACTAAGGGGT
AGATTCGGGTGGAGTCGTTTACGTATTAAGTGACAGACAGATCCGGTCCT
ACTACTCGACCAAATTTCGTCCCTGGTGGAAAAATAagttgactttgatt
tcatcttcaTTCGAAACTCAATGCAAAAATTGCACTATAAAACCATCCCA
CTGTATTTTTTGAGCTATTCCCATTttgatttcgatagaaatttttatac
aCGCTACAGGTAAAAAGTTCCACCGGCGGAGCTCTTAGACAGGGATGTCA
AGTGTTAAACAAGATAGGTGTAATAATGCAATATTAGTCTGCTGAATCAC
AGACCTCAAAAACTGCAAGTAGTTATATAAGAGTCTCCTTACGCTAGAGG
ATGAGTAGAAGCCTATGGACAAGGGAAATATCgtttattaagcatcctct
gctagaatcatggtcgaaatattttagaaaaaagggaattaattcccacg
aattttcaaaaccattcaaacgatttggaagtgctctcaagtaggttgga
agggtagagttttttaagatctgaggatccaaaagtttaaaaatggtcca
atagggctcagaatagagcctggaagtctataaacccgagccaaattgaa
atatccgattaaatttaagagatggctcaaaatcgactttctcgcccgaa
ctccaaatttcggaAAACGAGTAATTAAGCTagattctcaataaattttg
acctgaccatgattgtataaggagcacgaatcttTTAGTGGATACCAGCA
GCCGAATACGATATGTGTTATGTGCTACTTTTAGGTTGTATAAACTATAA
TAATGTCCTCACCGTATCctactttttcctctttttcagcttttcatgGC
ATCTGTGAGTGCTGGAGAAGTATTTGTGATGAACAAATCACAAGAGCCTG
CTGCACATGTCGCGTTTCTTTCCATTGGTAAAATCGATGAAGAATCGAAT
GCTAAATATTCCGAAATCCTGTTCAGATTTTTGAACACCAAAGATATTAA
AAATGAAAGGTACACATTCTACCGGCCATTTACCTCCCATTCATGCAAat
accattgatttcaaagccccgaagTGGCTAAAGCTTTTAAACTCttagat
gggaaatgaaacaaCTTATTTTCCAATCCAAAATGCAAACAGAGAAAGCG
CAAGATTCAATCCCTTATTCGAAAAGCGGCAAAAATCTTAccgcttcact
tttttttgctttaaagtCTTTAACTCTTTAAGTGCCACAGTCTGCTGCGC
GGACCTGTCTGAATGATAGAAAAGTACCCAGTTGTAAAACTCCAAACCAA
TTCACTGgaagacagaatcaagtaaagcagggccaaatttggaggttctt
ggactactcgttgaccaaaaatggtcaagaacggtcaaaatcttaaaaaa
gtggatttttgtcaaacttttgcaatttttttactttttggcttaaaatc
tcgctaaaaagactcacttttgatatttcttttgcTTGACCATGCAGCCC
AATCCAATTTTTAcaagttagaccaaaaatgacgatttctaactcaaact
gggcattacaggagggcttcgccctcctacatagcccatgacCAATATAC
TCgtcattggcacttaaagggttaagaaagGTTGACAATTCCTCTCGAGG
CCttcgggcttcaaactcaatggcaAACATAGGCTAGGCTCCCTCTCGTC
AAAGTGAAATTTGCTGATAGTAGCTTCCCTTAATAAAGTTTATAAGTTAT
CATATTGTCTTtaaatataatctgcagcgcAGACAAAagaggctgtaact
tttgataaaaccaAATTAACCAAATgaatagcctggatatccagctttaa
ataaaaaaacctcaacatacaaaggtTTAAAATTACAGCTTGGCCTCCCC
AGAGAATGAAAGGAAGCTGTATCTCTTCACTAGCGAGTGGAGAATTATAC
TTTTGTTACAGAATTTCTCCGTGCCATGTAGATCAGACCTTACGGCATTA
ACGAAGTGAGTGCATACAAGCTGACTGCATTCTGATTTAAGAATGTAAAG
CACTTTAAGAAGACCAGGCCGTAAACCAGAAACATAAAATAccgcctgga
tatccaggctaccaaATGACATACTTTTTTCGTTCTTTAGAATTCAATGT
ACATTTCACAAcgtatcaaaacaaaactttggATGGAACAACGCTTTGGT
ATCCAGACTATTCCCAGACACCCCGAAAACTGAAACTCCTCAAGAACCTG
CTCAACAATCAACTCAAAACAAAGGGTCTTCAGCCTGTGTTATATTGTAG
TAAGatttaataatttgattgaatCCTAGTTCCAGTTTTGAAATAttgta
aatatattttcaagaaatttcatgATTTATTCCGAAAATAGCAGAAAGAA
AGAACTTTTGAAAGGTTGTATAAAGTTTCTGAGATATGATCTTTTTAACT
GTCACTGTCAGAGAAAGGTCAAAAGTTCAGTGAAACG Coding sequence (CDS) from alignment at scaffold_286:473310..476096+ >TCONS_00057186 ID=TCONS_00057186|Name=TCONS_00057186|organism=Clytia hemisphaerica|type=CDS|length=1692bp|location=Sequence derived from alignment at scaffold_286:473310..476096+ (Clytia hemisphaerica)
CTTTTGGTCATCAATCGATTCCGTTTTAAGGAATCCCCTGATCTGGCAGA
GACAGTACTTAAGAAGCAAAACAAACCCAAGAACCACAACGGTTTTCTCT
ACTGTAGTattaaaaaagcaaacaaaatgcCGCATATACGAATATTCACG
AATGTGGCGAGAGACAAATTTGATCAACAATCAATGGAGAAAATGATTGA
AGAAATGGCTGTTATCAATGGCAAACCTGATAAActtttcatgGCATCTG
TGAGTGCTGGAGAAGTATTTGTGATGAACAAATCACAAGAGCCTGCTGCA
CATGTCGCGTTTCTTTCCATTGGTAAAATCGATGAAGAATCGAATGCTAA
ATATTCCGAAATCCTGTTCAGATTTTTGAACACCAAAGATATTAAAAATG
AAAGAATTCAATGTACATTTCACAAcgtatcaaaacaaaactttggATGG
AACAACGCTTTGGTATCCAGACTATTCCCAGACACCCCGAAAACTGAAAC
TCCTCAAGAACCTGCTCAACAATCAACTCAAAACAAAGGGTCTTCAGCCT
GTGTTATATTGTAGCTTTTGGTCATCAATCGATTCCGTTTTAAGGAATCC
CCTGATCTGGCAGAGACAGTACTTAAGAAGCAAAACAAACCCAAGAACCA
CAACGGTTTTCTCTACTGTAGTattaaaaaagcaaacaaaatgcCGCATA
TACGAATATTCACGAATGTGGCGAGAGACAAATTTGATCAACAATCAATG
GAGAAAATGATTGAAGAAATGGCTGTTATCAATGGCAAACCTGATAAAct
tttcatgGCATCTGTGAGTGCTGGAGAAGTATTTGTGATGAACAAATCAC
AAGAGCCTGCTGCACATGTCGCGTTTCTTTCCATTGGTAAAATCGATGAA
GAATCGAATGCTAAATATTCCGAAATCCTGTTCAGATTTTTGAACACCAA
AGATATTAAAAATGAAAGAATTCAATGTACATTTCACAAcgtatcaaaac
aaaactttggATGGAACAACGCTTTGGTATCCAGACTATTCCCAGACACC
CCGAAAACTGAAACTCCTCAAGAACCTGCTCAACAATCAACTCAAAACAA
AGGGTCTTCAGCCTGTGTTATATTGTAGCTTTTGGTCATCAATCGATTCC
GTTTTAAGGAATCCCCTGATCTGGCAGAGACAGTACTTAAGAAGCAAAAC
AAACCCAAGAACCACAACGGTTTTCTCTACTGTAGTattaaaaaagcaaa
caaaatgcCGCATATACGAATATTCACGAATGTGGCGAGAGACAAATTTG
ATCAACAATCAATGGAGAAAATGATTGAAGAAATGGCTGTTATCAATGGC
AAACCTGATAAActtttcatgGCATCTGTGAGTGCTGGAGAAGTATTTGT
GATGAACAAATCACAAGAGCCTGCTGCACATGTCGCGTTTCTTTCCATTG
GTAAAATCGATGAAGAATCGAATGCTAAATATTCCGAAATCCTGTTCAGA
TTTTTGAACACCAAAGATATTAAAAATGAAAGAATTCAATGTACATTTCA
CAAcgtatcaaaacaaaactttggATGGAACAACGCTTTGGTATCCAGAC
TATTCCCAGACACCCCGAAAACTGAAACTCCTCAAGAACCTGCTCAACAA
TCAACTCAAAACAAAGGGTCTTCAGCCTGTGTTATATTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057186-exon-scaffold_286-1491911889:473310..473545 | TCONS_00057186-exon-scaffold_286-1491911889:473310..473545 | Clytia hemisphaerica | exon |
| TCONS_00057186-exon-scaffold_286-1510915933:473310..473545 | TCONS_00057186-exon-scaffold_286-1510915933:473310..473545 | Clytia hemisphaerica | exon |
| TCONS_00057186-exon-scaffold_286-1575043694:473310..473545 | TCONS_00057186-exon-scaffold_286-1575043694:473310..473545 | Clytia hemisphaerica | exon |
| TCONS_00057186-exon-scaffold_286-1491911889:474449..474618 | TCONS_00057186-exon-scaffold_286-1491911889:474449..474618 | Clytia hemisphaerica | exon |
| TCONS_00057186-exon-scaffold_286-1510915933:474449..474618 | TCONS_00057186-exon-scaffold_286-1510915933:474449..474618 | Clytia hemisphaerica | exon |
| TCONS_00057186-exon-scaffold_286-1575043694:474449..474618 | TCONS_00057186-exon-scaffold_286-1575043694:474449..474618 | Clytia hemisphaerica | exon |
| TCONS_00057186-exon-scaffold_286-1491911889:475750..476096 | TCONS_00057186-exon-scaffold_286-1491911889:475750..476096 | Clytia hemisphaerica | exon |
| TCONS_00057186-exon-scaffold_286-1510915933:475750..476096 | TCONS_00057186-exon-scaffold_286-1510915933:475750..476096 | Clytia hemisphaerica | exon |
| TCONS_00057186-exon-scaffold_286-1575043694:475750..476096 | TCONS_00057186-exon-scaffold_286-1575043694:475750..476096 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_286 | supercontig | scaffold_286:473310..476096 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001398 | Macrophage_inhib_fac |
| IPR014347 | Tautomerase/MIF_sf |
Blast
The following BLAST results are available for this feature:
|
