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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057185 ID=TCONS_00057185|Name=TCONS_00057185|organism=Clytia hemisphaerica|type=transcript|length=860bp TATAACTCCTACTTTTTTACTACAATTGTGTAAACTAGATCGTTTGCTTA ATGAGTCGGTTATATAAATGATTCTAATGAGGTCTTAAAAAGTGAATACC AAGATTTGGATCACGCATATGACATATACACGTGCTTGAAAGGTTTTAAA AAATTGAGGAAGTTTAAAATgtttcaaacatcaaaacagtttatcacagt tttctttttcattcattgTTTTGCCACcgcattttctcaaaattctgGTC CCTTCGATCAGTGTTATGGAGATAAAGAATTGATAAATGGCTGTAGTGTG CCCTGGGGCTTTAACTTTCCTTATAAAGGCTTGTTTACACTCGCATGTGA TTATCATGATGTCTGTTACTCTTGCGCTGCTGGGCTGGAATCAACACGCA CTGACTGTGACAAAACATTCCTTCAAAATATGCAATATTTATGCTACAAA ACCTACCCAATAACAGATAAACCTATTTCTTCAAGAATCTCAAGAAATAA ACGATCCTTTACTGCATGGCAAAAATTCATAGAGGCTCTGAAAGGAAGTG CTGCTATTGGCCTTGATTTTTGGAAATGGTTTGGTGAAACTTGGTGGACT TTGGACCATTGTTTGACTGGAGCACATGTCTATTTCAACGCTGTTAAACA TTTCTCAATGGACTATTTCCATGAGGAGCCTGAAACCAAGTGTCAAATGC CATGCGCACAAATTATGGGGAACCCACGGTTAACTTTGAACTCGACCGAT TCGaaattttaagggctctgaccatagtgaatttttcataattgccgtgt ttaaaatgtgttttctgactgatgtaaccaacaaaactatggcatgttat acattttctg Run BLAST on NCBI protein sequence of TCONS_00057185-protein >TCONS_00057185-protein ID=TCONS_00057185-protein|Name=TCONS_00057185-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
MFQTSKQFITVFFFIHCFATAFSQNSGPFDQCYGDKELINGCSVPWGFNF PYKGLFTLACDYHDVCYSCAAGLESTRTDCDKTFLQNMQYLCYKTYPITD KPISSRISRNKRSFTAWQKFIEALKGSAAIGLDFWKWFGETWWTLDHCLT GAHVYFNAVKHFSMDYFHEEPETKCQMPCAQIMGNPRLTLNSTDSKF Run BLAST on NCBI transcript from alignment at scaffold_286:463801..470539+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057185 ID=TCONS_00057185|Name=TCONS_00057185|organism=Clytia hemisphaerica|type=transcript|length=6739bp|location=Sequence derived from alignment at scaffold_286:463801..470539+ (Clytia hemisphaerica) TATAACTCCTACTTTTTTACTACAATTGTGTAAACTAGATCGTTTGCTTA
ATGAGTCGGTTATATAAATGATTCTAATGAGGTCTTAAAAAGTGAATACC
AAGATTTGGATCACGCATATGACATATACACGTGCTTGAAAGGTCTCAAA
AAATTGAGGAAGTTTAAAATgtttcaaacatcaaaacagtttATCACAGT
TTTCTTTTNGCTTGAAAGGTTTTAAAAAATTGAGGAAGTTTAAAATgttt
caaacatcaaaacagtttatcacagttttctttttcattcattgTTTTGC
CACcgcattttctcaaaattctgGTCCCTTCGATCAGTGTTATGGAGATA
AAGAATTGATAAATGGCTGTAGTGTGCCCTGGGGCTTTAACTTTCCTTAT
AAAGGCTTGTTTACACTCGCATGTGATTATCATGATGTCTGTTACTCTTG
CGTAAGTAGCACATTAATAGACTTCATTACATTACTGACAACGCTTGCCT
TGTTTTGAACTTTTACTAAGAGCTAATTTATATTTCAGACTTTCAGTTAC
AATCTAATGAATATATATCACTAATTAAAAGAAAGTCATATTTCTAAATT
AGTTGGTTCATCATGTCGGACCATTGTCATTAGCATGTTATTATATGTGG
TGCTGTAAATCCGTTTTTGAAGAAGTAGCCGCCAATTACCATGCGGGCAT
TTTTCTGTCCATTTTACCACCATAAAACCGTCCCAGTTTTTTTCccgcct
aaagacaatagaaaaaagtttaaaaaaggattggatcgagtttaggttgg
taaattaaataaaaaagtggCACGCGTTTGACCgcacgactacggtcgaa
aagacaTGTTGAAAGAAACGGCGCCCACGAAGGTGTATTATTACAACAAA
ATATTCGACTATATTGCTATGTCTCTGGCCCTTTAATGCCGCTTCGGCTT
GTTGTTGTTAGTAAAATTACAAATgtgaataacttttgatagagctTTAA
CTAGATCACGTGTAATTATCATGTAAatgttttgaattattttttttcaa
ttttcatcttcattttggatttttcttttctaaatatttgttACCCATTA
GGGTGTGAAGAAGGACGTGGAAAGAATCCCACTAGGAAATCACCCGCGGA
AAGGGAAATCCTTCTTTAGCCTTCACATTTTCTCTCAATCTTCCGACGCC
AACCTTCGAGTAAATTATCCTTTTTCCTCCGTCTTAACTTTATACTACGT
CTATTAACActttttactctatttctttgtttaaggccggtctccacttt
cacaCGAAATGGGCGATAgcttttttcttaaccttttttgtctGAAGAAA
AGATTTTGTAATGAAAAAGTTTCgggcaaacaaaaaaaaaatgaaggaag
ttctacttttttcatccgttacgtcaatttcgaccaatggaattgcttca
tttttcaaccgaccaatgaccttacaaagaCGTCAACaattttcgctcat
gtcgcgcgaaagtggagacctgCCTTtagttaaaaacaaatttgttttta
cacgtttttttaataagaacatccaaaatttttgaagccttcggatgttc
ttgatttttttaacttttaagccTAGAaacgttcttaacatgttcttatt
ttcaccattttctgtgtatttttttccattttcctaagaaattggctgtt
ttagggtccgcaaagccttaaaatattcttaacttgttcttaatatttta
gccattgaagccttatgttccttatatagtttgttcttatataaaaaaag
tgtgtgtgTGTGACAGGCtagttaaaaacaaatttgtttttattcgaaaG
GTTAAGAGATTCACATTGGGCGATGTGAGAAAAGCGTTGGCTGTGAGAGA
TTGACTGCTAGCCAACAAAATGATCTTCTGTTTCAACTGTATAGATTACT
ACTCATAAAAAGTTATTCGTTTTTGAATAACACTTACTAAAGTGCAGGGC
GAATTTAGtgtgaatcgcagacctctatagatgtacttcctataagaaac
tttgcttcgctagaggatgagcagaagagCAGGAATGAGCAGGAAGAGGT
TTCTCAACTAAGGAATAACTTCTTTTTTAGGAACTTCTTTTGACTCATCC
GCTTTCGCTTTCACTTCAATCTCcaaagcaaaaatgaatgtCTCTCATCT
TAAGTCCATTCGTTTTaagcaataaaaatatttctcacaAGTTATATGcc
tgtgaaaaagtgaaaaaaggtaTTTCCAACGAGCTACCTCCTAGAGGCTG
TAACCTAAATGGGCTAAAAAAGATTATTAAGCTCCGGTtaaggagtttct
taaaatcagtatgttttttatttgtaaTAGTGTGtaaatttttttgcgtt
tgaTTTCCTGATCTTTCCggtttgatttcccgatttggtttgcgtttgcg
ctcgcacttactaggatatactcttttaattttcatgttagatatattaa
gaaaggctgaACACGATAAAGATGTTTGCATAATGGTTCGCTATTCAATA
ATGATTACCGGAGTTTATAGCAGTCATTATACGGCTGTTTTATTGTACAC
TTAAATTGAATGGACTTTAATACCTATACCAAATTTCCAGAAGTGATCGA
CGCTTTAATGGCTACGTTTAGACcggcctggcatttgtaattgcttgcag
tattcttttgaattctattgttccgcgcaattgttcggtttgtcaaatgc
ctaatgatgccagcgtgttggcatttcgttggcatttgaaatgccatttt
gagcaaaggaatccccttttctgacatttcaattcaaacaaaggaaccaa
aacaaagagaaaaaatgatatttttgattttctaaagtATTTGCaccttt
ttattcagttctctctatagattgtaaaatttgccaGAGGGTGCtttttt
cactgagactgtctggcgaaaatcgattagctgaaacaaagaaaattggt
agaaaacattactaactcccaaaacagttgtcaaagcgtttacaaccctt
tgaatttgaagaaaattttattaaaaatcatcaactcgcatatcaaggga
tatagaattacagccttctaatgaacattttctgtgacaagattcctcgt
cttttgtatcaaatcaatacagggtgtccctaattaaagtatcgagtttg
aaaatgcgattgagtagaaaagtttgtgtgtgtgttatcgctaaaatata
aagGTCGTGGTCCACTTAGCCTTTTTTGGTCGCCGTTCAATGCGCACGGC
TCGAGCGCATTGTGCGCAGAGCGCTTTTATACTTCCattgaaaactagaa
aaaagttgcgcgtaagagaaaatcaaaacaaaagcaattGTACATGATGA
AAATAAACACACAATCAGTATGTTTACCTTCTCTTTGATTGGCTACTTCA
TAAAGAACAATAGAAGAGACGCACAGCTTTGCGcacaaagttgaaatttt
tcaactttcaaaaaagctcaCGCCGTTCATTGCGACAAGCCTTGAAGgct
taatttatgcaataatcgAGCCGTGCGCGTTGTGCGGCGACCAAAAAAAG
CTAAGTGGACCACGACcttaagaacgttctccatcacacaggcttattac
aaaaggtagttacaacgtataaattaatcgtaatgacaaagaaaaaagag
ggagagcttaaaatacaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaagagggagagcttaaa
atacaattttgtgaacacgcacataaaactttctactcatagttgtgttt
cgactcgatactttaattagggacaccctgtacagatgaaagtttgctct
tcaactctatcgggaaagaaaacacttttcccatatgaccaattttttta
caaaagaatcccactacacattctgctacttttatggcaaccaatttatt
tatggtgcctttttcgcttaattggtcattaagccaatAGAAGTCTACgg
gtggtttttcactgagactgtctggcgaaaatagattagctgaaacaaag
aaaattgataggaaagcatttctgactcccaaaacagttctcaaagcgtt
tacaaccttttgaatttgaagaaaattttattaaaaatcatcaactcgca
tatcaagggatttagaattacagccttctaatgaacattttctgtgacaa
gattcctcttcttttgtatcaaatcaatacagatgaaagtttgctcttca
accctatcgggaaagaaaaaacttttcccatatgaccaattttttacaaa
ataaccccactgcacattctgctacttttatggcaaccaatttatttatg
GTGCCTTTTTCGcttggtcattaagccaagagaagtctatggtcgtgttc
agacctgaaagtttaagtttaaggcttaagtagtactaagttgatatggg
aattaagaaatgcaacgacttaattgctatttcatcttttagatagatTA
CATAAGAGAGGAAAAAGGAATCCGCTTCGTTTTTGATGCGGAGTATGGGT
CCATCGATCCatgatattctcattaaaagcccattaactacctaaattgc
tagagacgctccgagcgtctctaagtcataaatttcacgttctcctttca
taatttacaaaaggagcatgcttttcacttgcgaattcNNcctctcttgg
agaacaaaaggtttaatgatcaattttcgacgttaaatctggaatgctaa
tatgaagcgatcaaaatctgatgttaagcacgaatcttcattgtatattt
tttacaaaccttagaaatttataaaaaggaccgttgatgagaaccactta
tctatctagcgtagtgaaaaagcacccttaATATAATGAATGCAGTTTTA
GAGAAATTTCATGCTtctcattgtttgatctgtcaaagttgaacttgagg
aaatcaccttttcagtaatgactctaaaaagacgattccttaaatgccat
gacagaaaatacaatggaaacaCTATTAAAATCGattccctcatgagcaa
atgccaaattacaaatgccatttggtctaaacgcagccaatgCCCGTGAC
ACATCGAGTACAAATCCTATGATTACTATTGATTCCAGAATCTTTAAAAT
AAGCACTTCTTCCAAGGAACTTTAACCCTTCAAACCCGGGTGACGTGTAC
ACACGTTCTAAATTTTACAATATACAGAGTCTCTCAGACTTTCTCTCAGA
CCATTTGATTTAAAAGGTCATAAACTGAATGTTTTTGGAAAGAGTATGAA
AATACCTTTCTATTGGTAAAGAAACCATTATCTAGCTCTCAAGTTACAAG
CGTTTATACACCCCTGTTGCACATCtgcggtggaacttttttccccagtg
gggataaaaattcctattgaaatcccaatggggatggaaattatattgtt
caaaggttaaaaaaatcagTGGCTTTGgatggagtgcaatttttaaacta
gcctggatatccaagctcaaaattttagaaaaaacaaaatttacctcaac
atacaaagttctaaaattataagagcttggtctccctagagaatgaaagt
aaaaacccatgtttcctagtcaacccagggcagcaaaacagaaattaata
aaaagcagtcttacaagatctaaaactatttaaaacatccaaagattaca
ctatagtccataaaaaagtttgcatgcattatcatggccaaccatgtttt
cttggaaaatgaatttgcctctgttttcttctttttcatgttttcatgta
acagaaagccctatcttcactagcaactggaggactatcctatttttgct
ttagAATTGCTCCGCGCCGTGTAGATTGGCCCTTACGGTTTTAGAGAAGT
GAGCGCAAGCAAGCGGACTGCATTCTCTTAAAGAGAATGCAAATCGCTCT
AGGGAGaccaggctgtaaaccagaacataaaatattaaaaatctagactg
tgaaatagtttacagcctggatatccaggctattttTAAACATGAAATCA
AAGTCTATTTCCCTAAgaggctgaaattcaagggtattttttcaccgggg
acgaaacttttgctaaatttcccagtagggctggggtcccagcgggtctg
tgacacaagggtgtGTTTATGCCAGTTtgaatttaagttttttttcttct
ccagGCTGCTGGGCTGGAATCAACACGCACTGACTGTGACAAAACATTCC
TTCAAAATATGCAATATTTATGCTACAAAACCTACCCAATAACAGATAAA
CCTATTTCTTCAAGAATCTCAAGAAATAAACGATCCTTTACTGCATGGCA
AAAATTCATAGAGGCTCTGAAAGGAAGTGCTGCTATTGGCCTTGATTTTT
GGAAATGGTTTGGTGAAACTTGGTGGACTTTGGACCATTGTTTGACTGGA
GCACATGTCTATTTCAACGCTGTTAAACATTTCTCAATGGACTATTTCCA
TGAGGAGCCTGAAACCAAGTGTCAAATGCCATGCGCACAAATTATGGGGA
ACCCACGGTTAACTTTGAACTCGACCGATTCGaaattttaagggctctga
ccatagtgaatttttcataattgccgtgtttaaaatgtgttttctgactg
atgtaaccaacaaaactatggcatgttatacattttctg Coding sequence (CDS) from alignment at scaffold_286:463801..470539+ >TCONS_00057185 ID=TCONS_00057185|Name=TCONS_00057185|organism=Clytia hemisphaerica|type=CDS|length=1188bp|location=Sequence derived from alignment at scaffold_286:463801..470539+ (Clytia hemisphaerica) ATgtttcaaacatcaaaacagtttatcacagttttctttttcattcattg TTTTGCCACcgcattttctcaaaattctgGTCCCTTCGATCAGTGTTATG GAGATAAAGAATTGATAAATGGCTGTAGTGTGCCCTGGGGCTTTAACTTT CCTTATAAAGGCTTGTTTACACTCGCATGTGATTATCATGATGTCTGTTA CTCTTGCGCTGCTGGGCTGGAATCAACACGCACTGACTGTGACAAAACAT TCCTTCAAAATATGCAATATTTATGCTACAAAACCTACCCAATAACAGAT AAACCTATTTCTTCAAGAATCTCAAGAAATAAACGATCCTTTACTGCATG GCAAAAATTCATAGAGGCTCTGAAAGGAAGTGCTGCTATTGGCCTTGATT TTTGGAAATGGTTTGGTGAAACTTGGTGGACTTTGGACCATTGTTTGACT GGAGCACATGTCTATTTCAACGCTGTTAAACATTTCTCAATGGACTATTT CCATGAGGAGCCTGAAACCAAGTGTCAAATGCCATGCGCACAAATTATGG GGAACCCACGGTTAACTTTGAACTCGACCGATTCGaaattttaaATgttt caaacatcaaaacagtttatcacagttttctttttcattcattgTTTTGC CACcgcattttctcaaaattctgGTCCCTTCGATCAGTGTTATGGAGATA AAGAATTGATAAATGGCTGTAGTGTGCCCTGGGGCTTTAACTTTCCTTAT AAAGGCTTGTTTACACTCGCATGTGATTATCATGATGTCTGTTACTCTTG CGCTGCTGGGCTGGAATCAACACGCACTGACTGTGACAAAACATTCCTTC AAAATATGCAATATTTATGCTACAAAACCTACCCAATAACAGATAAACCT ATTTCTTCAAGAATCTCAAGAAATAAACGATCCTTTACTGCATGGCAAAA ATTCATAGAGGCTCTGAAAGGAAGTGCTGCTATTGGCCTTGATTTTTGGA AATGGTTTGGTGAAACTTGGTGGACTTTGGACCATTGTTTGACTGGAGCA CATGTCTATTTCAACGCTGTTAAACATTTCTCAATGGACTATTTCCATGA GGAGCCTGAAACCAAGTGTCAAATGCCATGCGCACAAATTATGGGGAACC CACGGTTAACTTTGAACTCGACCGATTCGaaattttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00057185-exon-scaffold_286-1491911889:463801..463942 | TCONS_00057185-exon-scaffold_286-1491911889:463801..463942 | Clytia hemisphaerica | exon |
TCONS_00057185-exon-scaffold_286-1510915933:463801..463942 | TCONS_00057185-exon-scaffold_286-1510915933:463801..463942 | Clytia hemisphaerica | exon |
TCONS_00057185-exon-scaffold_286-1575043694:463801..463942 | TCONS_00057185-exon-scaffold_286-1575043694:463801..463942 | Clytia hemisphaerica | exon |
TCONS_00057185-exon-scaffold_286-1491911889:464019..464251 | TCONS_00057185-exon-scaffold_286-1491911889:464019..464251 | Clytia hemisphaerica | exon |
TCONS_00057185-exon-scaffold_286-1510915933:464019..464251 | TCONS_00057185-exon-scaffold_286-1510915933:464019..464251 | Clytia hemisphaerica | exon |
TCONS_00057185-exon-scaffold_286-1575043694:464019..464251 | TCONS_00057185-exon-scaffold_286-1575043694:464019..464251 | Clytia hemisphaerica | exon |
TCONS_00057185-exon-scaffold_286-1491911889:470055..470539 | TCONS_00057185-exon-scaffold_286-1491911889:470055..470539 | Clytia hemisphaerica | exon |
TCONS_00057185-exon-scaffold_286-1510915933:470055..470539 | TCONS_00057185-exon-scaffold_286-1510915933:470055..470539 | Clytia hemisphaerica | exon |
TCONS_00057185-exon-scaffold_286-1575043694:470055..470539 | TCONS_00057185-exon-scaffold_286-1575043694:470055..470539 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_286 | supercontig | scaffold_286:463801..470539 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR016090 | PLipase_A2_dom |
Vocabulary: Molecular Function
Term | Definition |
GO:0004623 | phospholipase A2 activity |
Vocabulary: Biological Process
Term | Definition |
GO:0050482 | arachidonic acid secretion |
GO:0006644 | phospholipid metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0050482 |
arachidonic acid secretion |
biological_process |
GO:0006644 |
phospholipid metabolic process |
molecular_function |
GO:0004623 |
phospholipase A2 activity |
Blast
The following BLAST results are available for this feature:
|