TCONS_00057185 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057185
Unique NameTCONS_00057185
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length860

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057185 ID=TCONS_00057185|Name=TCONS_00057185|organism=Clytia hemisphaerica|type=transcript|length=860bp
TATAACTCCTACTTTTTTACTACAATTGTGTAAACTAGATCGTTTGCTTA
ATGAGTCGGTTATATAAATGATTCTAATGAGGTCTTAAAAAGTGAATACC
AAGATTTGGATCACGCATATGACATATACACGTGCTTGAAAGGTTTTAAA
AAATTGAGGAAGTTTAAAATgtttcaaacatcaaaacagtttatcacagt
tttctttttcattcattgTTTTGCCACcgcattttctcaaaattctgGTC
CCTTCGATCAGTGTTATGGAGATAAAGAATTGATAAATGGCTGTAGTGTG
CCCTGGGGCTTTAACTTTCCTTATAAAGGCTTGTTTACACTCGCATGTGA
TTATCATGATGTCTGTTACTCTTGCGCTGCTGGGCTGGAATCAACACGCA
CTGACTGTGACAAAACATTCCTTCAAAATATGCAATATTTATGCTACAAA
ACCTACCCAATAACAGATAAACCTATTTCTTCAAGAATCTCAAGAAATAA
ACGATCCTTTACTGCATGGCAAAAATTCATAGAGGCTCTGAAAGGAAGTG
CTGCTATTGGCCTTGATTTTTGGAAATGGTTTGGTGAAACTTGGTGGACT
TTGGACCATTGTTTGACTGGAGCACATGTCTATTTCAACGCTGTTAAACA
TTTCTCAATGGACTATTTCCATGAGGAGCCTGAAACCAAGTGTCAAATGC
CATGCGCACAAATTATGGGGAACCCACGGTTAACTTTGAACTCGACCGAT
TCGaaattttaagggctctgaccatagtgaatttttcataattgccgtgt
ttaaaatgtgttttctgactgatgtaaccaacaaaactatggcatgttat
acattttctg
Run BLAST on NCBI

protein sequence of TCONS_00057185-protein

>TCONS_00057185-protein ID=TCONS_00057185-protein|Name=TCONS_00057185-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
MFQTSKQFITVFFFIHCFATAFSQNSGPFDQCYGDKELINGCSVPWGFNF
PYKGLFTLACDYHDVCYSCAAGLESTRTDCDKTFLQNMQYLCYKTYPITD
KPISSRISRNKRSFTAWQKFIEALKGSAAIGLDFWKWFGETWWTLDHCLT
GAHVYFNAVKHFSMDYFHEEPETKCQMPCAQIMGNPRLTLNSTDSKF
Run BLAST on NCBI

transcript from alignment at scaffold_286:463801..470539+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057185 ID=TCONS_00057185|Name=TCONS_00057185|organism=Clytia hemisphaerica|type=transcript|length=6739bp|location=Sequence derived from alignment at scaffold_286:463801..470539+ (Clytia hemisphaerica)
TATAACTCCTACTTTTTTACTACAATTGTGTAAACTAGATCGTTTGCTTA ATGAGTCGGTTATATAAATGATTCTAATGAGGTCTTAAAAAGTGAATACC AAGATTTGGATCACGCATATGACATATACACGTGCTTGAAAGGTCTCAAA AAATTGAGGAAGTTTAAAATgtttcaaacatcaaaacagtttATCACAGT TTTCTTTTNGCTTGAAAGGTTTTAAAAAATTGAGGAAGTTTAAAATgttt caaacatcaaaacagtttatcacagttttctttttcattcattgTTTTGC CACcgcattttctcaaaattctgGTCCCTTCGATCAGTGTTATGGAGATA AAGAATTGATAAATGGCTGTAGTGTGCCCTGGGGCTTTAACTTTCCTTAT AAAGGCTTGTTTACACTCGCATGTGATTATCATGATGTCTGTTACTCTTG CGTAAGTAGCACATTAATAGACTTCATTACATTACTGACAACGCTTGCCT TGTTTTGAACTTTTACTAAGAGCTAATTTATATTTCAGACTTTCAGTTAC AATCTAATGAATATATATCACTAATTAAAAGAAAGTCATATTTCTAAATT AGTTGGTTCATCATGTCGGACCATTGTCATTAGCATGTTATTATATGTGG TGCTGTAAATCCGTTTTTGAAGAAGTAGCCGCCAATTACCATGCGGGCAT TTTTCTGTCCATTTTACCACCATAAAACCGTCCCAGTTTTTTTCccgcct aaagacaatagaaaaaagtttaaaaaaggattggatcgagtttaggttgg taaattaaataaaaaagtggCACGCGTTTGACCgcacgactacggtcgaa aagacaTGTTGAAAGAAACGGCGCCCACGAAGGTGTATTATTACAACAAA ATATTCGACTATATTGCTATGTCTCTGGCCCTTTAATGCCGCTTCGGCTT GTTGTTGTTAGTAAAATTACAAATgtgaataacttttgatagagctTTAA CTAGATCACGTGTAATTATCATGTAAatgttttgaattattttttttcaa ttttcatcttcattttggatttttcttttctaaatatttgttACCCATTA GGGTGTGAAGAAGGACGTGGAAAGAATCCCACTAGGAAATCACCCGCGGA AAGGGAAATCCTTCTTTAGCCTTCACATTTTCTCTCAATCTTCCGACGCC AACCTTCGAGTAAATTATCCTTTTTCCTCCGTCTTAACTTTATACTACGT CTATTAACActttttactctatttctttgtttaaggccggtctccacttt cacaCGAAATGGGCGATAgcttttttcttaaccttttttgtctGAAGAAA AGATTTTGTAATGAAAAAGTTTCgggcaaacaaaaaaaaaatgaaggaag ttctacttttttcatccgttacgtcaatttcgaccaatggaattgcttca tttttcaaccgaccaatgaccttacaaagaCGTCAACaattttcgctcat gtcgcgcgaaagtggagacctgCCTTtagttaaaaacaaatttgttttta cacgtttttttaataagaacatccaaaatttttgaagccttcggatgttc ttgatttttttaacttttaagccTAGAaacgttcttaacatgttcttatt ttcaccattttctgtgtatttttttccattttcctaagaaattggctgtt ttagggtccgcaaagccttaaaatattcttaacttgttcttaatatttta gccattgaagccttatgttccttatatagtttgttcttatataaaaaaag tgtgtgtgTGTGACAGGCtagttaaaaacaaatttgtttttattcgaaaG GTTAAGAGATTCACATTGGGCGATGTGAGAAAAGCGTTGGCTGTGAGAGA TTGACTGCTAGCCAACAAAATGATCTTCTGTTTCAACTGTATAGATTACT ACTCATAAAAAGTTATTCGTTTTTGAATAACACTTACTAAAGTGCAGGGC GAATTTAGtgtgaatcgcagacctctatagatgtacttcctataagaaac tttgcttcgctagaggatgagcagaagagCAGGAATGAGCAGGAAGAGGT TTCTCAACTAAGGAATAACTTCTTTTTTAGGAACTTCTTTTGACTCATCC GCTTTCGCTTTCACTTCAATCTCcaaagcaaaaatgaatgtCTCTCATCT TAAGTCCATTCGTTTTaagcaataaaaatatttctcacaAGTTATATGcc tgtgaaaaagtgaaaaaaggtaTTTCCAACGAGCTACCTCCTAGAGGCTG TAACCTAAATGGGCTAAAAAAGATTATTAAGCTCCGGTtaaggagtttct taaaatcagtatgttttttatttgtaaTAGTGTGtaaatttttttgcgtt tgaTTTCCTGATCTTTCCggtttgatttcccgatttggtttgcgtttgcg ctcgcacttactaggatatactcttttaattttcatgttagatatattaa gaaaggctgaACACGATAAAGATGTTTGCATAATGGTTCGCTATTCAATA ATGATTACCGGAGTTTATAGCAGTCATTATACGGCTGTTTTATTGTACAC TTAAATTGAATGGACTTTAATACCTATACCAAATTTCCAGAAGTGATCGA CGCTTTAATGGCTACGTTTAGACcggcctggcatttgtaattgcttgcag tattcttttgaattctattgttccgcgcaattgttcggtttgtcaaatgc ctaatgatgccagcgtgttggcatttcgttggcatttgaaatgccatttt gagcaaaggaatccccttttctgacatttcaattcaaacaaaggaaccaa aacaaagagaaaaaatgatatttttgattttctaaagtATTTGCaccttt ttattcagttctctctatagattgtaaaatttgccaGAGGGTGCtttttt cactgagactgtctggcgaaaatcgattagctgaaacaaagaaaattggt agaaaacattactaactcccaaaacagttgtcaaagcgtttacaaccctt tgaatttgaagaaaattttattaaaaatcatcaactcgcatatcaaggga tatagaattacagccttctaatgaacattttctgtgacaagattcctcgt cttttgtatcaaatcaatacagggtgtccctaattaaagtatcgagtttg aaaatgcgattgagtagaaaagtttgtgtgtgtgttatcgctaaaatata aagGTCGTGGTCCACTTAGCCTTTTTTGGTCGCCGTTCAATGCGCACGGC TCGAGCGCATTGTGCGCAGAGCGCTTTTATACTTCCattgaaaactagaa aaaagttgcgcgtaagagaaaatcaaaacaaaagcaattGTACATGATGA AAATAAACACACAATCAGTATGTTTACCTTCTCTTTGATTGGCTACTTCA TAAAGAACAATAGAAGAGACGCACAGCTTTGCGcacaaagttgaaatttt tcaactttcaaaaaagctcaCGCCGTTCATTGCGACAAGCCTTGAAGgct taatttatgcaataatcgAGCCGTGCGCGTTGTGCGGCGACCAAAAAAAG CTAAGTGGACCACGACcttaagaacgttctccatcacacaggcttattac aaaaggtagttacaacgtataaattaatcgtaatgacaaagaaaaaagag ggagagcttaaaatacaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaagagggagagcttaaa atacaattttgtgaacacgcacataaaactttctactcatagttgtgttt cgactcgatactttaattagggacaccctgtacagatgaaagtttgctct tcaactctatcgggaaagaaaacacttttcccatatgaccaattttttta caaaagaatcccactacacattctgctacttttatggcaaccaatttatt tatggtgcctttttcgcttaattggtcattaagccaatAGAAGTCTACgg gtggtttttcactgagactgtctggcgaaaatagattagctgaaacaaag aaaattgataggaaagcatttctgactcccaaaacagttctcaaagcgtt tacaaccttttgaatttgaagaaaattttattaaaaatcatcaactcgca tatcaagggatttagaattacagccttctaatgaacattttctgtgacaa gattcctcttcttttgtatcaaatcaatacagatgaaagtttgctcttca accctatcgggaaagaaaaaacttttcccatatgaccaattttttacaaa ataaccccactgcacattctgctacttttatggcaaccaatttatttatg GTGCCTTTTTCGcttggtcattaagccaagagaagtctatggtcgtgttc agacctgaaagtttaagtttaaggcttaagtagtactaagttgatatggg aattaagaaatgcaacgacttaattgctatttcatcttttagatagatTA CATAAGAGAGGAAAAAGGAATCCGCTTCGTTTTTGATGCGGAGTATGGGT CCATCGATCCatgatattctcattaaaagcccattaactacctaaattgc tagagacgctccgagcgtctctaagtcataaatttcacgttctcctttca taatttacaaaaggagcatgcttttcacttgcgaattcNNcctctcttgg agaacaaaaggtttaatgatcaattttcgacgttaaatctggaatgctaa tatgaagcgatcaaaatctgatgttaagcacgaatcttcattgtatattt tttacaaaccttagaaatttataaaaaggaccgttgatgagaaccactta tctatctagcgtagtgaaaaagcacccttaATATAATGAATGCAGTTTTA GAGAAATTTCATGCTtctcattgtttgatctgtcaaagttgaacttgagg aaatcaccttttcagtaatgactctaaaaagacgattccttaaatgccat gacagaaaatacaatggaaacaCTATTAAAATCGattccctcatgagcaa atgccaaattacaaatgccatttggtctaaacgcagccaatgCCCGTGAC ACATCGAGTACAAATCCTATGATTACTATTGATTCCAGAATCTTTAAAAT AAGCACTTCTTCCAAGGAACTTTAACCCTTCAAACCCGGGTGACGTGTAC ACACGTTCTAAATTTTACAATATACAGAGTCTCTCAGACTTTCTCTCAGA CCATTTGATTTAAAAGGTCATAAACTGAATGTTTTTGGAAAGAGTATGAA AATACCTTTCTATTGGTAAAGAAACCATTATCTAGCTCTCAAGTTACAAG CGTTTATACACCCCTGTTGCACATCtgcggtggaacttttttccccagtg gggataaaaattcctattgaaatcccaatggggatggaaattatattgtt caaaggttaaaaaaatcagTGGCTTTGgatggagtgcaatttttaaacta gcctggatatccaagctcaaaattttagaaaaaacaaaatttacctcaac atacaaagttctaaaattataagagcttggtctccctagagaatgaaagt aaaaacccatgtttcctagtcaacccagggcagcaaaacagaaattaata aaaagcagtcttacaagatctaaaactatttaaaacatccaaagattaca ctatagtccataaaaaagtttgcatgcattatcatggccaaccatgtttt cttggaaaatgaatttgcctctgttttcttctttttcatgttttcatgta acagaaagccctatcttcactagcaactggaggactatcctatttttgct ttagAATTGCTCCGCGCCGTGTAGATTGGCCCTTACGGTTTTAGAGAAGT GAGCGCAAGCAAGCGGACTGCATTCTCTTAAAGAGAATGCAAATCGCTCT AGGGAGaccaggctgtaaaccagaacataaaatattaaaaatctagactg tgaaatagtttacagcctggatatccaggctattttTAAACATGAAATCA AAGTCTATTTCCCTAAgaggctgaaattcaagggtattttttcaccgggg acgaaacttttgctaaatttcccagtagggctggggtcccagcgggtctg tgacacaagggtgtGTTTATGCCAGTTtgaatttaagttttttttcttct ccagGCTGCTGGGCTGGAATCAACACGCACTGACTGTGACAAAACATTCC TTCAAAATATGCAATATTTATGCTACAAAACCTACCCAATAACAGATAAA CCTATTTCTTCAAGAATCTCAAGAAATAAACGATCCTTTACTGCATGGCA AAAATTCATAGAGGCTCTGAAAGGAAGTGCTGCTATTGGCCTTGATTTTT GGAAATGGTTTGGTGAAACTTGGTGGACTTTGGACCATTGTTTGACTGGA GCACATGTCTATTTCAACGCTGTTAAACATTTCTCAATGGACTATTTCCA TGAGGAGCCTGAAACCAAGTGTCAAATGCCATGCGCACAAATTATGGGGA ACCCACGGTTAACTTTGAACTCGACCGATTCGaaattttaagggctctga ccatagtgaatttttcataattgccgtgtttaaaatgtgttttctgactg atgtaaccaacaaaactatggcatgttatacattttctg

Coding sequence (CDS) from alignment at scaffold_286:463801..470539+

>TCONS_00057185 ID=TCONS_00057185|Name=TCONS_00057185|organism=Clytia hemisphaerica|type=CDS|length=1188bp|location=Sequence derived from alignment at scaffold_286:463801..470539+ (Clytia hemisphaerica)
ATgtttcaaacatcaaaacagtttatcacagttttctttttcattcattg
TTTTGCCACcgcattttctcaaaattctgGTCCCTTCGATCAGTGTTATG
GAGATAAAGAATTGATAAATGGCTGTAGTGTGCCCTGGGGCTTTAACTTT
CCTTATAAAGGCTTGTTTACACTCGCATGTGATTATCATGATGTCTGTTA
CTCTTGCGCTGCTGGGCTGGAATCAACACGCACTGACTGTGACAAAACAT
TCCTTCAAAATATGCAATATTTATGCTACAAAACCTACCCAATAACAGAT
AAACCTATTTCTTCAAGAATCTCAAGAAATAAACGATCCTTTACTGCATG
GCAAAAATTCATAGAGGCTCTGAAAGGAAGTGCTGCTATTGGCCTTGATT
TTTGGAAATGGTTTGGTGAAACTTGGTGGACTTTGGACCATTGTTTGACT
GGAGCACATGTCTATTTCAACGCTGTTAAACATTTCTCAATGGACTATTT
CCATGAGGAGCCTGAAACCAAGTGTCAAATGCCATGCGCACAAATTATGG
GGAACCCACGGTTAACTTTGAACTCGACCGATTCGaaattttaaATgttt
caaacatcaaaacagtttatcacagttttctttttcattcattgTTTTGC
CACcgcattttctcaaaattctgGTCCCTTCGATCAGTGTTATGGAGATA
AAGAATTGATAAATGGCTGTAGTGTGCCCTGGGGCTTTAACTTTCCTTAT
AAAGGCTTGTTTACACTCGCATGTGATTATCATGATGTCTGTTACTCTTG
CGCTGCTGGGCTGGAATCAACACGCACTGACTGTGACAAAACATTCCTTC
AAAATATGCAATATTTATGCTACAAAACCTACCCAATAACAGATAAACCT
ATTTCTTCAAGAATCTCAAGAAATAAACGATCCTTTACTGCATGGCAAAA
ATTCATAGAGGCTCTGAAAGGAAGTGCTGCTATTGGCCTTGATTTTTGGA
AATGGTTTGGTGAAACTTGGTGGACTTTGGACCATTGTTTGACTGGAGCA
CATGTCTATTTCAACGCTGTTAAACATTTCTCAATGGACTATTTCCATGA
GGAGCCTGAAACCAAGTGTCAAATGCCATGCGCACAAATTATGGGGAACC
CACGGTTAACTTTGAACTCGACCGATTCGaaattttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036035XLOC_036035Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057185-proteinTCONS_00057185-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057185-exon-scaffold_286-1491911889:463801..463942TCONS_00057185-exon-scaffold_286-1491911889:463801..463942Clytia hemisphaericaexon
TCONS_00057185-exon-scaffold_286-1510915933:463801..463942TCONS_00057185-exon-scaffold_286-1510915933:463801..463942Clytia hemisphaericaexon
TCONS_00057185-exon-scaffold_286-1575043694:463801..463942TCONS_00057185-exon-scaffold_286-1575043694:463801..463942Clytia hemisphaericaexon
TCONS_00057185-exon-scaffold_286-1491911889:464019..464251TCONS_00057185-exon-scaffold_286-1491911889:464019..464251Clytia hemisphaericaexon
TCONS_00057185-exon-scaffold_286-1510915933:464019..464251TCONS_00057185-exon-scaffold_286-1510915933:464019..464251Clytia hemisphaericaexon
TCONS_00057185-exon-scaffold_286-1575043694:464019..464251TCONS_00057185-exon-scaffold_286-1575043694:464019..464251Clytia hemisphaericaexon
TCONS_00057185-exon-scaffold_286-1491911889:470055..470539TCONS_00057185-exon-scaffold_286-1491911889:470055..470539Clytia hemisphaericaexon
TCONS_00057185-exon-scaffold_286-1510915933:470055..470539TCONS_00057185-exon-scaffold_286-1510915933:470055..470539Clytia hemisphaericaexon
TCONS_00057185-exon-scaffold_286-1575043694:470055..470539TCONS_00057185-exon-scaffold_286-1575043694:470055..470539Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_286supercontigscaffold_286:463801..470539 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.072101 0 0.717868 0.372412 1.23193 1.28172 0.436123 0.327621 0.13097 0.40955 1.08229 0.70697 0.172183 0.143363 5.70376 9.26787 1.65853 6.388 21.9898 25.883 10.9455 15.001 4.99667 8.45446 0.174316 0 4.52825 8.31098
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016090PLipase_A2_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004623phospholipase A2 activity
Vocabulary: Biological Process
TermDefinition
GO:0050482arachidonic acid secretion
GO:0006644phospholipid metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0050482 arachidonic acid secretion
biological_process GO:0006644 phospholipid metabolic process
molecular_function GO:0004623 phospholipase A2 activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057185 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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