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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057177 ID=TCONS_00057177|Name=TCONS_00057177|organism=Clytia hemisphaerica|type=transcript|length=995bp
CCAACTTAATGCTACCTCCATTAAAATCGATTTATCTGCCGTGCCAAGGA
TAAGATACTCTATATATAAAGctgAAGAGAATTTCACAATTAAATTAAAC
GAAGATTTTGTCTCAAACAAACAACATTGTACCTCACTTAGAAAGAAAGA
TATAACCATTCCTTTTCTGCTAAAATTCCCTGAATCTGCATTCGGGAATG
TGACTGGTTCGTTAACAAAATGGAAACCAATCATTATGAGAAAGGGGAAA
ACTGTCAACAGATATCGAGTTACTTGGGCAATCAAAAGAAATCCCAAGAG
AATAAAATGTCCAAACAAAACGTCTTTTGTCAAACTTGGAACCACTCTCA
TTCGAGATAAAACTCGAAATATATCAAGACCCTTGATGTTCAAAGTCACA
TATAGCTGCAAGAAGAAATCCTCAATAGATTTAGGTGAATTGTCGGAAAA
GAAGACATCCTTGGTTGATTTCACTAAAAATAATCTACCATGGGCTGAGG
TCAAACTGACGAAAATTCAAAAAGGAAGATACAATCGACCACCTGTGGTT
GCTAATGGTTACGAAGTAGTTGTTATTGAAGGTTGTAGAGGAACTGTGAA
AATACCAGTATTTGACCCAGATGGAAACGAGATCAAGTGTAAATTATTGA
AAACAACTTTTGAATGTCGGTCAAAAGATTGTAATCAGCTATCATACTTT
ATTGTGGATGAGATAAACTGCATGATAACATTTACTGGTGCTAAACCAAA
TGCATCGACCAATCACCATACAATGTCAATGCATATTGAAGattttgacc
aatcagaaaGCAGTATCACTGGCCTCAGCCAATCATTAAGCCGCGTTCGT
TTCGacatgaaaatcaaatttttatcgAGGAAAACTACAGAATGCGGGAA
TAGGCCGAAGCTCATTCGGACTCCCTTTGAAAACTGTCGATCTGTGAAAA
TTGGAGAAAGATTAAAGTTAAAGTTTGGTGCAAAAGAAAATGCAG Run BLAST on NCBI transcript from alignment at scaffold_286:185721..192466+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057177 ID=TCONS_00057177|Name=TCONS_00057177|organism=Clytia hemisphaerica|type=transcript|length=6746bp|location=Sequence derived from alignment at scaffold_286:185721..192466+ (Clytia hemisphaerica)
CCAACTTAATGCTACCTCCATTAAAATCGATTTATCTGCCGTGCCAAGGA
TAAGATACTCTATATATAAAGGTTGGTAAACGTGATCGAATCTTCAGATG
TTCAAATTTTGGTACACCTCCAGTCATATATACAGTCAGTTTGACTCATc
ataatttcaaattattctaCTGGTGACCTGGGGGTGGGGGGGGGCANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNaaattgcttcattagtttttcctgatttttggc
agaaagatagagtgcaaggtaccctaaaatgtggctgaagtaatttttct
cggaaattttttttcgtcgtaaaatacggatctTCGCAAGAttaggccaa
aaactacctaaaaataagtttttttggacttggtgcaatattgcttcatt
agtttttcctgattttttggacaaagatgaagggcaaggttctctaaaac
gtgactgaagtagtttttttcggaaaatttattttggtcgtaaaaatcgg
attttcttatttggggaaattcccttttgtcatatttagggaaaatgagc
atttctcgagattggcttggtgTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTG
GTGAGAATCTTTAAGGTCGCTTCAAACATTACACATAAATTTCACAACAA
TTTCGTtttctttcatctttttcaaTACATATTATTGTTCAATGACTGAA
CACGAATAGTGTTCAAATGTCTATTTAAATTAGAGGCTAATAGTCTATTC
TAGTTTATCAGTCTCAATATTATGCCTCATTTAGAACTATAgtattcact
ttttttcaattttagctgAAGAGAATTTCACAATTAAATTAAACGAAGAT
TTTGTCTCAAACAAACAACATTGTACCTCACTTAGAAAGAAAGATATAAC
CATTCCTTTTCTGCTAAAATTCCCTGGTAAGTGAAACTCCAACTTCTCTA
CATTTGATTACCATACTTGGATTGAATTTATGCATTTTCCATAGCTTTTT
GAACTGTTTTTTAACATTTGATATAAAGGTGTGTGTCCTAATACTTGAAT
TGAAATTGTATTCCCCTTTATGCCTTTTCCATAGCTTTTTCTGTACTCTt
ttcttacacccctgtctaaGTGACACAGGATACGCCGGAATTGAATAAAG
GTGTGTTCTAATCAATGATTTTTGACCGGGGTAGAGAATTTCAAGAGAAT
TTAGTCGGGATTACTCGTTATCACACCAGCTTAAAATTAGGCCTTTTCTG
GACAATTTTTTTCACCAGGTTAGGGGTGTTTCTAGGTTGATGTGAAAGGA
TGTACTATTTTCTGGCGCGTATATGGCTGTTGTTTTAGTATTTGCCTTTT
TGATTCATCTGGCTTCAGATGAACAGGGGTGTTAaaatgcacgtttttta
taagaatgcccAAAATTTCAAAGCGTTTGGATGTTCAATTTTACAGTTTC
TAGCCTAAAATTGATCTCAAAATGCTctgattttcaacattttgtgagta
ttagTTGTAGGTTTGATTGGATgtccgcaaagccttagaatgttcttaac
ttgctcttaacattttacccatggaagccttatgttcttatatagtttgt
tctcaaattaaaaaaaagactttgatttattgtttagaacttaaagtttc
atgccgcccgtatggacgacaatcatcagctaataaaaatcgtttgaaaa
atattcatatacAATGGCTTCTTCGTCTGAAATTCTAACGTCAATTTTTA
GGTGACGCCGAAGTTCatgagtaaatttttatttctgtGTCAACATTTTG
TGACAATTTCAGTTCGTTTATTCAATAAGTTTTTGCCTGGGTAATTGGCG
AATTCAAATTTCTCGCACAAACAAAGTTGACAGTTTTTTGCTTCAGGTGA
GTATGCTTTCGCGTGTCTCACAACTCTCCAAGTTACCGATGGCGTACCGT
TTAGTGTGTGAAAGAAGTTTTATGTGTCGAGTGtctatagtttgttctca
taagaaatatacatcactataattttgtttgcttttagAATCTGCATTCG
GGAATGTGACTGGTTCGTTAACAAAATGGAAACCAATCATTATGAGAAAG
GGGAAAACTGTAAGTGTGTTCGGTTCGGTTCGGTTCATTGAGGaaacacg
tttttataagagaaGTTAAATTTGGATAGCCTTCGgctgttcttaacatt
tttagttcaagcctaaaaaggttcttaacctgttcttattttcagtattt
tgtGAGTATTCTTGTGCAATTTACTTAAACTGAGTGttctagagtccgca
aagctttAATATGGTCTTAACTTATCATTACCATTTATTGTTAGGCGGTt
aattaatacaataatgaccagtTTTTTACGGTCTTTACTTGCCCTCACTA
ACCgttcattattgtattaaagtCAAACGCTTTTTTTGCCATCATTGTTT
TATCACAGATTTATAAAATGTATAAATTTTCAACTGAGGATTGTTTGAAT
AAGACACATGAAACTGACAGTattgaaacaataattttcattacttcAAC
TATAtgataaaatttataaatatatattgttgctattgttttaaatgcaa
agcttctgattggtcaagcgctgaaattctattgtaatgtgacgtgacct
aggtaggatttccttaCTAgatacggcacacttttcagccaaagcacgac
atctagcctatcgggctttataaatctgtggttTTATCTAATACCTGTAT
TCATTTCTTTCGCCAGAAGGTCAACAGATATCGAGTTACTTGGGCAATCA
AAAGAAATCCCAAGAGAATAAAATGTCCAAACAAAACGTCTTTTGTCAAA
CTTGGAACCACTCTCATTCGAGATAAAACTCGAAATATATCAAGACCCTT
GATGTTCAAAGTCACATATAGCTGCAAGAAGAAATCCTCAATAGATTTAG
GTGAATTGTCGGAAAAGAAGACATCCTTGGTTGATTTCACTAAAAATAAT
CTACCATGGGCTGAGGTCAAACTGACGAAAATTCAAAAAGGAAGATACAA
TCGACCACCTGTGGTTGCTAATGGTTACGAAGTAGTTGTTATTGAAGGTT
GTAGAGGAACTGTGAAAATACCAGGTAATTCTACAATCACCTGCAAAAAT
TATGAGACATTTTGGCTCATTTGGGTTCCCGCGCCCCCAATCAATGTTGC
CTTGGTGGGACGTAATTTTGACTACGGAAAATACTTGGATTCAACCAACA
TTACCTTAGGGGGGAGGGGAACTCACCAGTCTCATGAATTTTTGCAGAAG
ATTGTAGGTAAATAGTCTGACAAAGTCTCTTTGTACTATTTGTACTACAC
ATTCTTATAcaagcaaccaggttgctaagtAACTAAGGCTCAATTTTGCC
AATTCCTTTTCACTATCTTCGTTaattaaaagctttttagacaATCTAAC
CATGGTTGTTATGGCAACCCTTgcccaataagcataaatataatataata
tcaAGGGGTgttcaaatatttcagaaaatgaaCGCTAAGCAACCTAGAGA
CTGACCTGAAAATTGGAGTTGGTTATAAAGAAATATGTGTACCCTCCATT
CTACAGTTTTCCTACTGTCTTAACCCTTAGAAGGCGAAAGGCGTATATAT
ACGtcttgaaaaggtcattttaccgatacacaatcttttggtcataactc
ctgaccacttgagattcagagaaaaaaaatctgctattttttgtagctga
gaaaaagagctttccaacgataccaaagctGATACCTGAATCATTTGTCC
TGGTcaagaaattgcctttgaaagaataaatttcccgaaaaaaatgatga
actttttggcctttttcaaaaaagttagcggcTTGGAAAGGTCAAGATTG
ATCTTCTTCCATCTCATCTTCTCATTCCTTATAAGGAATAACCAAACAAA
TCATCTCAAAATAAATATCAAGCCTTCGTTTTCACTTTAATTTTTAGTAT
TTGACCCAGATGGAAACGAGATCAAGTGTAAATTATTGAAAACAACTTTT
GAATGTCGGTCAAAAGATTGTAATCAGCTATCATACTTTATTGTGGATGA
GGTAATCAATAATTTTGTTCTTTGAAGTCATGATATCGAATTTCAAGTAC
ATTTAGTCTTTTTCACCTTGAAGTTAAAATACAACCGTTTTTAACGAATT
CAAGGAAATTCGATTTGTCACCTTTAATCCAATTTTCGTTTGAACACTTT
TATACGatttcctcaaattcgcgaaagaaaaaaaattgtaaacttCGTGA
TTTCTCGACCTCGAAATTGTGATTTGAAACTCAATcattctgtaattcga
acaaaaaacaATTAGCTTACCATAACTCGAATCCGTCTATCattttataa
ttgaaaaaaaagaaaatcttggttcattaaagtttgaaaagtaaCAGTCT
TTGGACATTTTAGATAAACTGCATGATAACATTTACTGGTGCTAAACCAA
ATGCATCGACCAATCACCATACAATGTCAATGCATATTGAAGattttgac
caatcagaaaGCAGTATCACTGGCCTCAGCCAATCATTAAGCCGCGTTCG
TTTCGacatgaaaatcaaatttttatcgAGGAAAACTACAGAATGCGGGA
ATAGGCCGAAGCTCATTCGGACTCCCTTTGAAAACTGTCGATCTGTGAAA
ATTGGAGAAAGATTAAAGTTAAAGTTTGGTGCAAAAGAAAATGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057177-exon-scaffold_286-1491911889:185721..185791 | TCONS_00057177-exon-scaffold_286-1491911889:185721..185791 | Clytia hemisphaerica | exon |
| TCONS_00057177-exon-scaffold_286-1510915933:185721..185791 | TCONS_00057177-exon-scaffold_286-1510915933:185721..185791 | Clytia hemisphaerica | exon |
| TCONS_00057177-exon-scaffold_286-1575043694:185721..185791 | TCONS_00057177-exon-scaffold_286-1575043694:185721..185791 | Clytia hemisphaerica | exon |
| TCONS_00057177-exon-scaffold_286-1491911889:188536..188646 | TCONS_00057177-exon-scaffold_286-1491911889:188536..188646 | Clytia hemisphaerica | exon |
| TCONS_00057177-exon-scaffold_286-1510915933:188536..188646 | TCONS_00057177-exon-scaffold_286-1510915933:188536..188646 | Clytia hemisphaerica | exon |
| TCONS_00057177-exon-scaffold_286-1575043694:188536..188646 | TCONS_00057177-exon-scaffold_286-1575043694:188536..188646 | Clytia hemisphaerica | exon |
| TCONS_00057177-exon-scaffold_286-1491911889:189759..189829 | TCONS_00057177-exon-scaffold_286-1491911889:189759..189829 | Clytia hemisphaerica | exon |
| TCONS_00057177-exon-scaffold_286-1510915933:189759..189829 | TCONS_00057177-exon-scaffold_286-1510915933:189759..189829 | Clytia hemisphaerica | exon |
| TCONS_00057177-exon-scaffold_286-1575043694:189759..189829 | TCONS_00057177-exon-scaffold_286-1575043694:189759..189829 | Clytia hemisphaerica | exon |
| TCONS_00057177-exon-scaffold_286-1491911889:190490..190844 | TCONS_00057177-exon-scaffold_286-1491911889:190490..190844 | Clytia hemisphaerica | exon |
| TCONS_00057177-exon-scaffold_286-1510915933:190490..190844 | TCONS_00057177-exon-scaffold_286-1510915933:190490..190844 | Clytia hemisphaerica | exon |
| TCONS_00057177-exon-scaffold_286-1575043694:190490..190844 | TCONS_00057177-exon-scaffold_286-1575043694:190490..190844 | Clytia hemisphaerica | exon |
| TCONS_00057177-exon-scaffold_286-1491911889:191718..191821 | TCONS_00057177-exon-scaffold_286-1491911889:191718..191821 | Clytia hemisphaerica | exon |
| TCONS_00057177-exon-scaffold_286-1510915933:191718..191821 | TCONS_00057177-exon-scaffold_286-1510915933:191718..191821 | Clytia hemisphaerica | exon |
| TCONS_00057177-exon-scaffold_286-1575043694:191718..191821 | TCONS_00057177-exon-scaffold_286-1575043694:191718..191821 | Clytia hemisphaerica | exon |
| TCONS_00057177-exon-scaffold_286-1491911889:192184..192466 | TCONS_00057177-exon-scaffold_286-1491911889:192184..192466 | Clytia hemisphaerica | exon |
| TCONS_00057177-exon-scaffold_286-1510915933:192184..192466 | TCONS_00057177-exon-scaffold_286-1510915933:192184..192466 | Clytia hemisphaerica | exon |
| TCONS_00057177-exon-scaffold_286-1575043694:192184..192466 | TCONS_00057177-exon-scaffold_286-1575043694:192184..192466 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_286 | supercontig | scaffold_286:185721..192466 + |
Blast
The following BLAST results are available for this feature:
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