TCONS_00057166 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057166
Unique NameTCONS_00057166
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length290

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057166 ID=TCONS_00057166|Name=TCONS_00057166|organism=Clytia hemisphaerica|type=transcript|length=290bp
CTTTAATAGAAATTCCAGTTTGGACACTGGACTATTTTCATGCATCacat
tatataattattcatcttatgaaatactcttttcttgagcaTTGATGATC
AGTCTGGTTATATTCAtactttttttctctaaaattttatttgaaagggt
AAATTGCTTTTTATCTTAGAATCACACCTCTATTGGAATTAGTGAGCCCC
CTAAATCCAAGAGTGACCGATTTTTCATATACTGTTTCACAATATATGTT
TATTTTCCAAGGTGCTTTTAGTGAGGAAGGATCAAGTCAA
Run BLAST on NCBI

transcript from alignment at scaffold_285:596912..597201

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057166 ID=TCONS_00057166|Name=TCONS_00057166|organism=Clytia hemisphaerica|type=transcript|length=290bp|location=Sequence derived from alignment at scaffold_285:596912..597201 (Clytia hemisphaerica)
TTGACTTGATCCTTCCTCACTAAAAGCACCTTGGAAAATAAACATATATT
GTGAAACAGTATATGAAAAATCGGTCACTCTTGGATTTAGGGGGCTCACT
AATTCCAATAGAGGTGTGATTCTAAGATAAAAAGCAATTTaccctttcaa
ataaaattttagagaaaaaaagtaTGAATATAACCAGACTGATCATCAAt
gctcaagaaaagagtatttcataagatgaataattatataatgtGATGCA
TGAAAATAGTCCAGTGTCCAAACTGGAATTTCTATTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036025XLOC_036025Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057166-exon-scaffold_285-1491911889:596912..597201TCONS_00057166-exon-scaffold_285-1491911889:596912..597201Clytia hemisphaericaexon
TCONS_00057166-exon-scaffold_285-1510915933:596912..597201TCONS_00057166-exon-scaffold_285-1510915933:596912..597201Clytia hemisphaericaexon
TCONS_00057166-exon-scaffold_285-1575043694:596912..597201TCONS_00057166-exon-scaffold_285-1575043694:596912..597201Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:596912..597201 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.36374	0	0	0	0	1.17775	3.95794	1.98935	1.04277	1.60809	0	0.973125	0	0	0.446259	0.327476	0	0.463722	0	1.17025	1.14468	0	0.902593	0	0	0.84517	4.42055	3.91642	2.9825
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057166 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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