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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057164 ID=TCONS_00057164|Name=TCONS_00057164|organism=Clytia hemisphaerica|type=transcript|length=1012bp
TCTCATTAACGTCGCATGCGCAGCAGTGTTAACACATTCAGAAATggcgt
catcaaaaatcgtcatATCAGACGTCATCGTCAAAGTCGGTGGCAAGAAT
TTTATTTACTTACTTCCCTTCATGGTGACTGTCTGCGTTATACCCGCGCT
ATCAGCTGTCTTTTACAATCTCCCGCGTTTAATTATGTCGTCAGCAAGGG
AAGGACAGTTCCCAAGTATGTTTTCACTAATACATAAGGAAAGACGAACT
CCAGTACCGGCTATCTTATTCTTAGCCTTTATAACAGGTTTATTAACACT
ATGCAATCTTAGTTTACAAACAATGTTGCAGTGTTGCAACATATCTATCT
GGTTTGAATATGCATTTGCCATATCAACAATCTTGGTCAATCGATGGAAA
AGACCAGAATTGAAAAGGACCTACAAAACATGGATCACTACACCAATTAT
TATGATGATTGTCCCCATCGTACTCTTCGTCTTATCTTTCAATGAGAAAC
CTATCAGCTCTGTCATTATCTTAATCGCAATGTCGTTGAGCGTCCCAGTT
TTTTACGTTTTCTTACATAAACGTTGGTTTCAGAGCTCATTACCTAATAC
AGCGATCAGCTTATGGTTGACTGAACGTTTACCGTTAGTGAAGTGTGAAT
TTGAAGGAGAACATGTTGATTAAAGCTATATATTATTGGATAAATAAATG
GAAAGTGTAGCGGAAATAtgtcagaaaaattttatatacaaAAATGATGA
AACTTTTCACAATGAAACTATCGCTGAGCAAATTTTTCCTGTTTGCAAAG
TAGAGCAAATATTACTGGCTTTTGTAGCTACTATGAATTTTTTGCAacaa
tttttacctttttaaaaatgttatcaaGAATATCAACACCGCATCTAATC
GATAAGCGGttctaagaatgccatttttagagcagtTTTGACTGcaaatt
tccaattttccatGAACATTTCCAAGGGATTCCAACAAATAAAATGCAGG
AGGACCTCTTTT Run BLAST on NCBI protein sequence of TCONS_00057164-protein >TCONS_00057164-protein ID=TCONS_00057164-protein|Name=TCONS_00057164-protein|organism=Clytia hemisphaerica|type=polypeptide|length=223bp
LINVACAAVLTHSEMASSKIVISDVIVKVGGKNFIYLLPFMVTVCVIPAL
SAVFYNLPRLIMSSAREGQFPSMFSLIHKERRTPVPAILFLAFITGLLTL
CNLSLQTMLQCCNISIWFEYAFAISTILVNRWKRPELKRTYKTWITTPII
MMIVPIVLFVLSFNEKPISSVIILIAMSLSVPVFYVFLHKRWFQSSLPNT
AISLWLTERLPLVKCEFEGEHVD Run BLAST on NCBI transcript from alignment at scaffold_285:580037..581048 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057164 ID=TCONS_00057164|Name=TCONS_00057164|organism=Clytia hemisphaerica|type=transcript|length=1012bp|location=Sequence derived from alignment at scaffold_285:580037..581048 (Clytia hemisphaerica)
AAAAGAGGTCCTCCTGCATTTTATTTGTTGGAATCCCTTGGAAATGTTCa
tggaaaattggaaatttgCAGTCAAAactgctctaaaaatggcattctta
gaaCCGCTTATCGATTAGATGCGGTGTTGATATTCttgataacattttta
aaaaggtaaaaattgtTGCAAAAAATTCATAGTAGCTACAAAAGCCAGTA
ATATTTGCTCTACTTTGCAAACAGGAAAAATTTGCTCAGCGATAGTTTCA
TTGTGAAAAGTTTCATCATTTttgtatataaaatttttctgacaTATTTC
CGCTACACTTTCCATTTATTTATCCAATAATATATAGCTTTAATCAACAT
GTTCTCCTTCAAATTCACACTTCACTAACGGTAAACGTTCAGTCAACCAT
AAGCTGATCGCTGTATTAGGTAATGAGCTCTGAAACCAACGTTTATGTAA
GAAAACGTAAAAAACTGGGACGCTCAACGACATTGCGATTAAGATAATGA
CAGAGCTGATAGGTTTCTCATTGAAAGATAAGACGAAGAGTACGATGGGG
ACAATCATCATAATAATTGGTGTAGTGATCCATGTTTTGTAGGTCCTTTT
CAATTCTGGTCTTTTCCATCGATTGACCAAGATTGTTGATATGGCAAATG
CATATTCAAACCAGATAGATATGTTGCAACACTGCAACATTGTTTGTAAA
CTAAGATTGCATAGTGTTAATAAACCTGTTATAAAGGCTAAGAATAAGAT
AGCCGGTACTGGAGTTCGTCTTTCCTTATGTATTAGTGAAAACATACTTG
GGAACTGTCCTTCCCTTGCTGACGACATAATTAAACGCGGGAGATTGTAA
AAGACAGCTGATAGCGCGGGTATAACGCAGACAGTCACCATGAAGGGAAG
TAAGTAAATAAAATTCTTGCCACCGACTTTGACGATGACGTCTGATatga
cgatttttgatgacgccATTTCTGAATGTGTTAACACTGCTGCGCATGCG
ACGTTAATGAGA Coding sequence (CDS) from alignment at scaffold_285:580037..581048 >TCONS_00057164 ID=TCONS_00057164|Name=TCONS_00057164|organism=Clytia hemisphaerica|type=CDS|length=672bp|location=Sequence derived from alignment at scaffold_285:580037..581048 (Clytia hemisphaerica)
TTAATCAACATGTTCTCCTTCAAATTCACACTTCACTAACGGTAAACGTT
CAGTCAACCATAAGCTGATCGCTGTATTAGGTAATGAGCTCTGAAACCAA
CGTTTATGTAAGAAAACGTAAAAAACTGGGACGCTCAACGACATTGCGAT
TAAGATAATGACAGAGCTGATAGGTTTCTCATTGAAAGATAAGACGAAGA
GTACGATGGGGACAATCATCATAATAATTGGTGTAGTGATCCATGTTTTG
TAGGTCCTTTTCAATTCTGGTCTTTTCCATCGATTGACCAAGATTGTTGA
TATGGCAAATGCATATTCAAACCAGATAGATATGTTGCAACACTGCAACA
TTGTTTGTAAACTAAGATTGCATAGTGTTAATAAACCTGTTATAAAGGCT
AAGAATAAGATAGCCGGTACTGGAGTTCGTCTTTCCTTATGTATTAGTGA
AAACATACTTGGGAACTGTCCTTCCCTTGCTGACGACATAATTAAACGCG
GGAGATTGTAAAAGACAGCTGATAGCGCGGGTATAACGCAGACAGTCACC
ATGAAGGGAAGTAAGTAAATAAAATTCTTGCCACCGACTTTGACGATGAC
GTCTGATatgacgatttttgatgacgccATTTCTGAATGTGTTAACACTG
CTGCGCATGCGACGTTAATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057164-exon-scaffold_285-1491911889:580037..581048 | TCONS_00057164-exon-scaffold_285-1491911889:580037..581048 | Clytia hemisphaerica | exon |
| TCONS_00057164-exon-scaffold_285-1510915933:580037..581048 | TCONS_00057164-exon-scaffold_285-1510915933:580037..581048 | Clytia hemisphaerica | exon |
| TCONS_00057164-exon-scaffold_285-1575043694:580037..581048 | TCONS_00057164-exon-scaffold_285-1575043694:580037..581048 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_285 | supercontig | scaffold_285:580037..581048 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002293 | AA/rel_permease1 |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0015171 | amino acid transmembrane transporter activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0003333 | amino acid transmembrane transport |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0003333 |
amino acid transmembrane transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0015171 |
amino acid transmembrane transporter activity |
Blast
The following BLAST results are available for this feature:
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