TCONS_00057163 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057163
Unique NameTCONS_00057163
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length356

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057163 ID=TCONS_00057163|Name=TCONS_00057163|organism=Clytia hemisphaerica|type=transcript|length=356bp
NCAACCTGAAAACGTGTGTAGCCCGAAAACGCATACAACCTGAAAACGTA
TGTAACCCAAAAACGCATACAACCTGAAAACGCATCCCACCTACAAACGC
ATCCGACCTAAAAAACGTACCCCACCTAAAAACTTATACAACTTGAAAAC
GCATACAACCTGAAACCGTATGTAGCCTGAAAACGTATACAACTTGAAAA
CGTATACAACCTGAAAACGTATGTGACCCGAAAATGTATGCAACTTGAAA
ACGTATGCAACTTGAAAAAAGGTATACAACCCGAAAACGGATACAACCCG
AAAACGTATACAACCCGAAAACGTATACAACTTGAAAACGTATACAACTT
GAAAAC
Run BLAST on NCBI

transcript from alignment at scaffold_285:579017..579372

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057163 ID=TCONS_00057163|Name=TCONS_00057163|organism=Clytia hemisphaerica|type=transcript|length=356bp|location=Sequence derived from alignment at scaffold_285:579017..579372 (Clytia hemisphaerica)
GTTTTCAAGTTGTATACGTTTTCAAGTTGTATACGTTTTCGGGTTGTATA
CGTTTTCGGGTTGTATCCGTTTTCGGGTTGTATACCTTTTTTCAAGTTGC
ATACGTTTTCAAGTTGCATACATTTTCGGGTCACATACGTTTTCAGGTTG
TATACGTTTTCAAGTTGTATACGTTTTCAGGCTACATACGGTTTCAGGTT
GTATGCGTTTTCAAGTTGTATAAGTTTTTAGGTGGGGTACGTTTTTTAGG
TCGGATGCGTTTGTAGGTGGGATGCGTTTTCAGGTTGTATGCGTTTTTGG
GTTACATACGTTTTCAGGTTGTATGCGTTTTCGGGCTACACACGTTTTCA
GGTTGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036022XLOC_036022Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057163-exon-scaffold_285-1491911889:579017..579372TCONS_00057163-exon-scaffold_285-1491911889:579017..579372Clytia hemisphaericaexon
TCONS_00057163-exon-scaffold_285-1510915933:579017..579372TCONS_00057163-exon-scaffold_285-1510915933:579017..579372Clytia hemisphaericaexon
TCONS_00057163-exon-scaffold_285-1575043694:579017..579372TCONS_00057163-exon-scaffold_285-1575043694:579017..579372Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:579017..579372 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.98895	4.49299	1.42564	0	1.47262	2.41816	3.05006	2.44457	0.648433	0.762173	0	0.251882	0	0	0	0.161129	0.211228	0.817393	0	0	0.325559	0	1.15396	2.22668	0	0.25056	0	0	0.996459	0.308904
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057163 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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