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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057155 ID=TCONS_00057155|Name=TCONS_00057155|organism=Clytia hemisphaerica|type=transcript|length=784bp
CTCTTCCGAACGGCAATTGTTTGTACAGTTCTCTGTCGCTTCACATGGTT
GGCAACAATTCGCTGTCTGATGCTTTGCGATGCCTTACGTGTGgggaatt
atttttgttttgtgagtaTTATTCCAATCATCCATTGCTCAAAGAACTCT
TTTCTAAGCATTCCACAGTTTTCCATAGTTTTAATTCTTTACTAGGTGGT
GCATGTGTTTCCGACTTCTCACAGGGCACTAATTTGAAAGGTTCCGCATT
GATTAAAGCAGAGGCCAAGCATAACTCTTCcccaaatgttttttcttcct
ttttatgCATTTGTGCTCTTTCAACTGTCACCAGGAggaaaataataaca
ttttaTCCTGACCAGGGTCTACCAAGGTACAAAATTCTATTCAATAACAC
CACCATTATTCCTAGAGTAGATGACTCAAAGCTTAAAccatttaaaattt
tgttttgtaattTATCAGACCATTTGAACAGTGACTTTCAGCCAAATCAT
TTCGTCCCTTTGGTAAATCTGAAAgaatccaaaaaaacaaaaacaaaaac
aaagaaaactggTTCTCTACCATCATGTAGTAAAAAGCAGCTCTCAAAAc
ccaaaagaaaatttgaagctGAAAGTCTCTCAGATCAACCACCATCCAAA
CAGCTCACATTTGCCTCATCTGTTGTTACTACTGATATGCCTTCTCTTTC
AAGTGTTTCATGTAGCAATCCATCATTATCTTCAATTAAAAAGTCCACCT
CTAAAGCCAAAGGTGACATGTTAAATAATCCAAc Run BLAST on NCBI protein sequence of TCONS_00057155-protein >TCONS_00057155-protein ID=TCONS_00057155-protein|Name=TCONS_00057155-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
LPNGNCLYSSLSLHMVGNNSLSDALRCLTCGELFLFCEYYSNHPLLKELF
SKHSTVFHSFNSLLGGACVSDFSQGTNLKGSALIKAEAKHNSSPNVFSSF
LCICALSTVTRRKIITFYPDQGLPRYKILFNNTTIIPRVDDSKLKPFKIL
FCNLSDHLNSDFQPNHFVPLVNLKESKKTKTKTKKTGSLPSCSKKQLSKP
KRKFEAESLSDQPPSKQLTFASSVVTTDMPSLSSVSCSNPSLSSIKKSTS
KAKGDMLNNP Run BLAST on NCBI transcript from alignment at scaffold_285:528667..529450 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057155 ID=TCONS_00057155|Name=TCONS_00057155|organism=Clytia hemisphaerica|type=transcript|length=784bp|location=Sequence derived from alignment at scaffold_285:528667..529450 (Clytia hemisphaerica)
gTTGGATTATTTAACATGTCACCTTTGGCTTTAGAGGTGGACTTTTTAAT
TGAAGATAATGATGGATTGCTACATGAAACACTTGAAAGAGAAGGCATAT
CAGTAGTAACAACAGATGAGGCAAATGTGAGCTGTTTGGATGGTGGTTGA
TCTGAGAGACTTTCagcttcaaattttcttttgggTTTTGAGAGCTGCTT
TTTACTACATGATGGTAGAGAAccagttttctttgtttttgtttttgttt
ttttggattcTTTCAGATTTACCAAAGGGACGAAATGATTTGGCTGAAAG
TCACTGTTCAAATGGTCTGATAaattacaaaacaaaattttaaatggTTT
AAGCTTTGAGTCATCTACTCTAGGAATAATGGTGGTGTTATTGAATAGAA
TTTTGTACCTTGGTAGACCCTGGTCAGGAtaaaatgttattattttccTC
CTGGTGACAGTTGAAAGAGCACAAATGcataaaaaggaagaaaaaacatt
tgggGAAGAGTTATGCTTGGCCTCTGCTTTAATCAATGCGGAACCTTTCA
AATTAGTGCCCTGTGAGAAGTCGGAAACACATGCACCACCTAGTAAAGAA
TTAAAACTATGGAAAACTGTGGAATGCTTAGAAAAGAGTTCTTTGAGCAA
TGGATGATTGGAATAAtactcacaaaacaaaaataattcccCACACGTAA
GGCATCGCAAAGCATCAGACAGCGAATTGTTGCCAACCATGTGAAGCGAC
AGAGAACTGTACAAACAATTGCCGTTCGGAAGAG Coding sequence (CDS) from alignment at scaffold_285:528667..529450 >TCONS_00057155 ID=TCONS_00057155|Name=TCONS_00057155|organism=Clytia hemisphaerica|type=CDS|length=780bp|location=Sequence derived from alignment at scaffold_285:528667..529450 (Clytia hemisphaerica)
TGGATTATTTAACATGTCACCTTTGGCTTTAGAGGTGGACTTTTTAATTG
AAGATAATGATGGATTGCTACATGAAACACTTGAAAGAGAAGGCATATCA
GTAGTAACAACAGATGAGGCAAATGTGAGCTGTTTGGATGGTGGTTGATC
TGAGAGACTTTCagcttcaaattttcttttgggTTTTGAGAGCTGCTTTT
TACTACATGATGGTAGAGAAccagttttctttgtttttgtttttgttttt
ttggattcTTTCAGATTTACCAAAGGGACGAAATGATTTGGCTGAAAGTC
ACTGTTCAAATGGTCTGATAaattacaaaacaaaattttaaatggTTTAA
GCTTTGAGTCATCTACTCTAGGAATAATGGTGGTGTTATTGAATAGAATT
TTGTACCTTGGTAGACCCTGGTCAGGAtaaaatgttattattttccTCCT
GGTGACAGTTGAAAGAGCACAAATGcataaaaaggaagaaaaaacatttg
ggGAAGAGTTATGCTTGGCCTCTGCTTTAATCAATGCGGAACCTTTCAAA
TTAGTGCCCTGTGAGAAGTCGGAAACACATGCACCACCTAGTAAAGAATT
AAAACTATGGAAAACTGTGGAATGCTTAGAAAAGAGTTCTTTGAGCAATG
GATGATTGGAATAAtactcacaaaacaaaaataattcccCACACGTAAGG
CATCGCAAAGCATCAGACAGCGAATTGTTGCCAACCATGTGAAGCGACAG
AGAACTGTACAAACAATTGCCGTTCGGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057155-exon-scaffold_285-1491911889:528667..529450 | TCONS_00057155-exon-scaffold_285-1491911889:528667..529450 | Clytia hemisphaerica | exon |
| TCONS_00057155-exon-scaffold_285-1510915933:528667..529450 | TCONS_00057155-exon-scaffold_285-1510915933:528667..529450 | Clytia hemisphaerica | exon |
| TCONS_00057155-exon-scaffold_285-1575043694:528667..529450 | TCONS_00057155-exon-scaffold_285-1575043694:528667..529450 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_285 | supercontig | scaffold_285:528667..529450 . |
Blast
The following BLAST results are available for this feature:
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