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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057152 ID=TCONS_00057152|Name=TCONS_00057152|organism=Clytia hemisphaerica|type=transcript|length=1072bp
GCACTGATTACTGGATAACCCCTTATACTGCTGAATCTATAACTGTTTTA
CTGGACTGGATTTGTTTTGGACACTGATTACTGGATAACCCTTTATACTG
ATGAATCTATAACTGTTTTATTGGACTTGATTTGTTTTGGACACTGATTA
CTGAATAACACCCTTTTATTACTGATTGTTCTTGATTCtactgatatttt
gaaaatatggacCTTTATACTAAACACAATGATTCACTTTCCATACTATG
TCGCCTTTGTCGAGGAAAAATTGTTCCCAAAGTAGGATATAAAAATCCAA
AGCAAGCAACtgaatttaaaaatcaaattgaaatgCTCTTTAATTATAAC
TTATCAAATGATCAACCATCTGTAGATCCACCAAAACTTTGTGGCAGCTG
TGCACGTCAGATAAGGAGCGTAGAAAACCATTGTATACCACAACCAATCG
CTAAATTCCCTGAACATTCGGATTCTGTTAGTTGTGATGTATGTCGGAAA
AAAATTGAGCATTCATGAGTTCAAAGTTGTGAAAGAACCAGTGTCTTTAT
CCATCAAAATAATTGACTGTGCTAAGAAATATGGATTTTTGTATGCGGAA
TAATTTAAAAAGTATACATTTGTAAGGGCGAAGGAAAGCCTCAAGGCACC
GGTCATTGACCTAACCATTTACGTTTTCAAAGATTTGCTGACAGATGATT
ACAGGTGGcaaattgttgtttttgacACGGTCATTTCACCTGACAAAATC
CCTGCTTTACAAAATTTGGAAAGGTTCATAAATGAAcagaattttgagaa
tttttttcaatattgcaAAGATTTATCACTCTGTACTGGTAATGACgatt
tagaaaatttgattgCCTCACGGAAAGAGGACAAGTCTTCCCATGGTAGC
ATAGTGCTAGAAAATGTGCAGTTGGAaggattttccaaaattgaagCTCC
CATTAGGCATACTAATTGTGATATTTTGTTAAGCACAGAGGCTGGTCGAA
GTGATAACTGCCAGGTCAACAGAAAGTCCCTCCAAACCATGGAGAGGCGT
AAATCACTTGATGATGATCAGC Run BLAST on NCBI protein sequence of TCONS_00057152-protein >TCONS_00057152-protein ID=TCONS_00057152-protein|Name=TCONS_00057152-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
MDLYTKHNDSLSILCRLCRGKIVPKVGYKNPKQATEFKNQIEMLFNYNLS
NDQPSVDPPKLCGSCARQIRSVENHCIPQPIAKFPEHSDSVSCDVCRKKI
EHS Run BLAST on NCBI transcript from alignment at scaffold_285:520819..521890 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057152 ID=TCONS_00057152|Name=TCONS_00057152|organism=Clytia hemisphaerica|type=transcript|length=1072bp|location=Sequence derived from alignment at scaffold_285:520819..521890 (Clytia hemisphaerica)
GCTGATCATCATCAAGTGATTTACGCCTCTCCATGGTTTGGAGGGACTTT
CTGTTGACCTGGCAGTTATCACTTCGACCAGCCTCTGTGCTTAACAAAAT
ATCACAATTAGTATGCCTAATGGGAGcttcaattttggaaaatcctTCCA
ACTGCACATTTTCTAGCACTATGCTACCATGGGAAGACTTGTCCTCTTTC
CGTGAGGcaatcaaattttctaaatcGTCATTACCAGTACAGAGTGATAA
ATCTTtgcaatattgaaaaaaattctcaaaattctgTTCATTTATGAACC
TTTCCAAATTTTGTAAAGCAGGGATTTTGTCAGGTGAAATGACCGTgtca
aaaacaacaatttgCCACCTGTAATCATCTGTCAGCAAATCTTTGAAAAC
GTAAATGGTTAGGTCAATGACCGGTGCCTTGAGGCTTTCCTTCGCCCTTA
CAAATGTATACTTTTTAAATTATTCCGCATACAAAAATCCATATTTCTTA
GCACAGTCAATTATTTTGATGGATAAAGACACTGGTTCTTTCACAACTTT
GAACTCATGAATGCTCAATTTTTTTCCGACATACATCACAACTAACAGAA
TCCGAATGTTCAGGGAATTTAGCGATTGGTTGTGGTATACAATGGTTTTC
TACGCTCCTTATCTGACGTGCACAGCTGCCACAAAGTTTTGGTGGATCTA
CAGATGGTTGATCATTTGATAAGTTATAATTAAAGAGcatttcaatttga
tttttaaattcaGTTGCTTGCTTTGGATTTTTATATCCTACTTTGGGAAC
AATTTTTCCTCGACAAAGGCGACATAGTATGGAAAGTGAATCATTGTGTT
TAGTATAAAGgtccatattttcaaaatatcagtaGAATCAAGAACAATCA
GTAATAAAAGGGTGTTATTCAGTAATCAGTGTCCAAAACAAATCAAGTCC
AATAAAACAGTTATAGATTCATCAGTATAAAGGGTTATCCAGTAATCAGT
GTCCAAAACAAATCCAGTCCAGTAAAACAGTTATAGATTCAGCAGTATAA
GGGGTTATCCAGTAATCAGTGC Coding sequence (CDS) from alignment at scaffold_285:520819..521890 >TCONS_00057152 ID=TCONS_00057152|Name=TCONS_00057152|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at scaffold_285:520819..521890 (Clytia hemisphaerica)
TCATGAATGCTCAATTTTTTTCCGACATACATCACAACTAACAGAATCCG
AATGTTCAGGGAATTTAGCGATTGGTTGTGGTATACAATGGTTTTCTACG
CTCCTTATCTGACGTGCACAGCTGCCACAAAGTTTTGGTGGATCTACAGA
TGGTTGATCATTTGATAAGTTATAATTAAAGAGcatttcaatttgatttt
taaattcaGTTGCTTGCTTTGGATTTTTATATCCTACTTTGGGAACAATT
TTTCCTCGACAAAGGCGACATAGTATGGAAAGTGAATCATTGTGTTTAGT
ATAAAGgtccat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057152-exon-scaffold_285-1491911889:520819..521890 | TCONS_00057152-exon-scaffold_285-1491911889:520819..521890 | Clytia hemisphaerica | exon |
| TCONS_00057152-exon-scaffold_285-1510915933:520819..521890 | TCONS_00057152-exon-scaffold_285-1510915933:520819..521890 | Clytia hemisphaerica | exon |
| TCONS_00057152-exon-scaffold_285-1575043694:520819..521890 | TCONS_00057152-exon-scaffold_285-1575043694:520819..521890 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_285 | supercontig | scaffold_285:520819..521890 . |
Blast
The following BLAST results are available for this feature:
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