TCONS_00057151 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057151
Unique NameTCONS_00057151
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length745

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057151 ID=TCONS_00057151|Name=TCONS_00057151|organism=Clytia hemisphaerica|type=transcript|length=745bp
CCCAGGACTGGCACCAGCAATAGTATGTAGCAAATTTGTATGGTAAGTTG
AATGATGTTTACGTAGTCAGGTAGAATATTTAATGTAAGACTTTCTTGAT
TTGAGATATTTGATAATGCAGCATGCTACAACATTCCCAAAACTTGCACA
TCTCAATCGACATTTAAAGCAGAcacatttttctgaaaaacacGCAGTCA
AACTAAACAATGTTATTTCTGTCGCATGCAAAGAATCAAGCAATTTTATT
GGCGTATCGAACCAAGATAACAAACATTACCATTACCATTGTCCTGATTG
TGGTAAAGTAATAAAGCAGCAATTATCGCGCtcacaaaaataaagaagac
cGATAAATTCATCCACAGAAGATGCAAAGAGATGGAAGTGGTATACCGTA
TTccgaaatcaaaattaaattatttacCGCCTGCAGTCGTCAAATGTGAT
ATCTGTAACGTTGAAATGCGAAAGGTTCTTTATCAAGGCATGTTGCAACA
AAACACAGGGGCAGTGTACCATCACAGGCGATCTGTGTTGATAGAGAAAG
TGCTCTATTTATGGTCATGAAGAACAAAACGGGATCCCTTATTATCCTAT
TCATGTCCAAAAGTTGTTGCAGGTCGAGGCCCATGTAATCAATTGTGAGG
ACAATGCTTGTTAGACCACTTTTGCAGTTTCTAGCGAAAATCGTAGGCAA
CTTCCTGTCACTATTTACACATCGTTGACGATAATGCTGAGTACC
Run BLAST on NCBI

transcript from alignment at scaffold_285:461281..462025

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057151 ID=TCONS_00057151|Name=TCONS_00057151|organism=Clytia hemisphaerica|type=transcript|length=745bp|location=Sequence derived from alignment at scaffold_285:461281..462025 (Clytia hemisphaerica)
GGTACTCAGCATTATCGTCAACGATGTGTAAATAGTGACAGGAAGTTGCC
TACGATTTTCGCTAGAAACTGCAAAAGTGGTCTAACAAGCATTGTCCTCA
CAATTGATTACATGGGCCTCGACCTGCAACAACTTTTGGACATGAATAGG
ATAATAAGGGATCCCGTTTTGTTCTTCATGACCATAAATAGAGCACTTTC
TCTATCAACACAGATCGCCTGTGATGGTACACTGCCCCTGTGTTTTGTTG
CAACATGCCTTGATAAAGAACCTTTCGCATTTCAACGTTACAGATATCAC
ATTTGACGACTGCAGGCGgtaaataatttaattttgatttcggAATACGG
TATACCACTTCCATCTCTTTGCATCTTCTGTGGATGAATTTATCggtctt
ctttatttttgtgaGCGCGATAATTGCTGCTTTATTACTTTACCACAATC
AGGACAATGGTAATGGTAATGTTTGTTATCTTGGTTCGATACGCCAATAA
AATTGCTTGATTCTTTGCATGCGACAGAAATAACATTGTTTAGTTTGACT
GCgtgtttttcagaaaaatgtgTCTGCTTTAAATGTCGATTGAGATGTGC
AAGTTTTGGGAATGTTGTAGCATGCTGCATTATCAAATATCTCAAATCAA
GAAAGTCTTACATTAAATATTCTACCTGACTACGTAAACATCATTCAACT
TACCATACAAATTTGCTACATACTATTGCTGGTGCCAGTCCTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036010XLOC_036010Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057151-exon-scaffold_285-1491911889:461281..462025TCONS_00057151-exon-scaffold_285-1491911889:461281..462025Clytia hemisphaericaexon
TCONS_00057151-exon-scaffold_285-1510915933:461281..462025TCONS_00057151-exon-scaffold_285-1510915933:461281..462025Clytia hemisphaericaexon
TCONS_00057151-exon-scaffold_285-1575043694:461281..462025TCONS_00057151-exon-scaffold_285-1575043694:461281..462025Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:461281..462025 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0749435	0.146641	0.178521	0.070535	0	0	0	0.138177	0.201177	0	0.132062	0.091432	0	0	0.0496884	0	0	0	0	0	0.0758919	0	0.14213	0.126848	0.0907594	0	0	0.0748498
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057151 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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