TCONS_00057150 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057150
Unique NameTCONS_00057150
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length496

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057150 ID=TCONS_00057150|Name=TCONS_00057150|organism=Clytia hemisphaerica|type=transcript|length=496bp
AAAAGAAACGATTCAGAATACAATACAGAGAATACACCCATCTATCTTTG
CAGCCTAGATGCAGAAAAGGCTTTTGACACATGTAACTGGATGAAGCTCT
TCACATCTCTTCACGAAAAGTCGACTGTTCCAAACACTATCCTCAAGTTC
CTAATAAAGCTTTACCAACAGGGGGACGCCACTATCAGATACAGAGGAGA
ATGCTCTGATAAATTCACATTCTCTCAAGGAGTTAGGCAGGGATCGATCC
TGTCTCCTTTCTTCTACAACCACTATACCGAACAACTAATAAGGGATCTT
CAAGACATGAAAATCGGAACCAAACTACCAGGAGGAGTCAACATATCAGT
AATAGCCTTTGCAGATAATATTATTTTGCTCAGTCCGAACCTGAAACAGC
TGCAGAGGATGTTAGATAAGTGTGTCGTCTTTGGGAAAGAACATTGGTTG
AAATTCAATAAATTAAAAACCCAGTTTATCATATCAGGATCGAGCC
Run BLAST on NCBI

protein sequence of TCONS_00057150-protein

>TCONS_00057150-protein ID=TCONS_00057150-protein|Name=TCONS_00057150-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
KRNDSEYNTENTPIYLCSLDAEKAFDTCNWMKLFTSLHEKSTVPNTILKF
LIKLYQQGDATIRYRGECSDKFTFSQGVRQGSILSPFFYNHYTEQLIRDL
QDMKIGTKLPGGVNISVIAFADNIILLSPNLKQLQRMLDKCVVFGKEHWL
KFNKLKTQFIISGSS
Run BLAST on NCBI

transcript from alignment at scaffold_285:444750..445245

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057150 ID=TCONS_00057150|Name=TCONS_00057150|organism=Clytia hemisphaerica|type=transcript|length=496bp|location=Sequence derived from alignment at scaffold_285:444750..445245 (Clytia hemisphaerica)
GGCTCGATCCTGATATGATAAACTGGGTTTTTAATTTATTGAATTTCAAC
CAATGTTCTTTCCCAAAGACGACACACTTATCTAACATCCTCTGCAGCTG
TTTCAGGTTCGGACTGAGCAAAATAATATTATCTGCAAAGGCTATTACTG
ATATGTTGACTCCTCCTGGTAGTTTGGTTCCGATTTTCATGTCTTGAAGA
TCCCTTATTAGTTGTTCGGTATAGTGGTTGTAGAAGAAAGGAGACAGGAT
CGATCCCTGCCTAACTCCTTGAGAGAATGTGAATTTATCAGAGCATTCTC
CTCTGTATCTGATAGTGGCGTCCCCCTGTTGGTAAAGCTTTATTAGGAAC
TTGAGGATAGTGTTTGGAACAGTCGACTTTTCGTGAAGAGATGTGAAGAG
CTTCATCCAGTTACATGTGTCAAAAGCCTTTTCTGCATCTAGGCTGCAAA
GATAGATGGGTGTATTCTCTGTATTGTATTCTGAATCGTTTCTTTT

Coding sequence (CDS) from alignment at scaffold_285:444750..445245

>TCONS_00057150 ID=TCONS_00057150|Name=TCONS_00057150|organism=Clytia hemisphaerica|type=CDS|length=495bp|location=Sequence derived from alignment at scaffold_285:444750..445245 (Clytia hemisphaerica)
GCTCGATCCTGATATGATAAACTGGGTTTTTAATTTATTGAATTTCAACC
AATGTTCTTTCCCAAAGACGACACACTTATCTAACATCCTCTGCAGCTGT
TTCAGGTTCGGACTGAGCAAAATAATATTATCTGCAAAGGCTATTACTGA
TATGTTGACTCCTCCTGGTAGTTTGGTTCCGATTTTCATGTCTTGAAGAT
CCCTTATTAGTTGTTCGGTATAGTGGTTGTAGAAGAAAGGAGACAGGATC
GATCCCTGCCTAACTCCTTGAGAGAATGTGAATTTATCAGAGCATTCTCC
TCTGTATCTGATAGTGGCGTCCCCCTGTTGGTAAAGCTTTATTAGGAACT
TGAGGATAGTGTTTGGAACAGTCGACTTTTCGTGAAGAGATGTGAAGAGC
TTCATCCAGTTACATGTGTCAAAAGCCTTTTCTGCATCTAGGCTGCAAAG
ATAGATGGGTGTATTCTCTGTATTGTATTCTGAATCGTTTCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036009XLOC_036009Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057150-exon-scaffold_285-1491911889:444750..445245TCONS_00057150-exon-scaffold_285-1491911889:444750..445245Clytia hemisphaericaexon
TCONS_00057150-exon-scaffold_285-1510915933:444750..445245TCONS_00057150-exon-scaffold_285-1510915933:444750..445245Clytia hemisphaericaexon
TCONS_00057150-exon-scaffold_285-1575043694:444750..445245TCONS_00057150-exon-scaffold_285-1575043694:444750..445245Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057150-proteinTCONS_00057150-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:444750..445245 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.120545	0.839785	0.273866	0.666811	0.526923	1.43035	1.63665	0.416675	0.645149	0.751436	1.07026	0.164426	0	0.140386	0.075328	0.46399	0.19023	0	0.412522	0.358556	0	0.283471	0.257716	0.530883	0.710701	0	0.361794	0	0.279578
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057150 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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