|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057148 ID=TCONS_00057148|Name=TCONS_00057148|organism=Clytia hemisphaerica|type=transcript|length=1164bp
AATGGATGATTACCCTCAGGACTACGCAGAATTTATTGAAAATGGCGAGC
ATATCAATAATTATATGGATAGAATGGGAAATTCCGGTGAGTGGGCCGAT
GCTGCCATCATTCGAGCCACGGCAGATGCATTACAAATTGAGATCCATGT
AATAAGCTCAAATATGGACCACATCGAAACTTTCACACCACCAGGCCACA
CAGAAACAATTTTTCTTGGTCAAGTCATGAACATCCACTACGTTTCCACC
AGCAACATCAGGCAGCCCCAAACAATACCATTCGGTGGGGTCACGTCTGA
TGGAATAAGTCTAACAGATACTTCGGGAATGAACATCTCTCTAACAtggt
tttttaattttatgaaaaaaaatccagtgcTAACCCAAAAAATCAGTGAC
TTAAAAGCTACTGCTTCAAAAAAGCTAATGAGGAGTTTTGGGCAATTTCG
GGTCGGAAAGTCGGCGGAAGCTAAAAGGTTGTGGTATGAGTTGATAAAGA
GTAGGAAACTTCCTCTATCTACGTCATCAGTTAACGCTGCTAATATCAGT
GATCTAATTTGTTTGGAACCTGTGCATAATCATGGGCTAACAAAATTTAT
GTACAAAAAAGCATACGGATCTTGCAGTTCTAAAGACTGCAAGTGGAAAA
TACCTGATAGTCGCGAGTTCGAGCTCAATAGAACATCGATTGACCTAATT
AAAACTTTCCACATCGGTGAAAGAGAGAGATGTCCAGAGTGCGCGGGCCA
TTTTATTGGTGAGAATAGATTGACGGTAGCTTCTCCCTTCCTTATTATCT
TTGGAGATGGAAACTCCATGCATAGTTTCCCTGAGTCagtcattttgaaa
gaaaatgatcaCCCCCTGTGCTATGACCTTCAGTTTATCTCACTTAAAAC
TGAAAACACTAAAAGATGTCATTATAGCTCGTTTATGAAATATGGTGACA
CACACTGGacattttttgaacaatttgtATCTGGAAATCCAATCCGAAAC
TTTTTGACATTGCCAAGAGATACGGAACAgcagatttcttttgttattta
caTTTGCTTGGCATTACTTCAGTCGTTTTCACCTACATTCCGACAACTAG
GCAAAAAACGCAGCatcaaaaatgataatcaaAAGCCAAACAAGTGTAAG
AAAGTGATCCAGAA Run BLAST on NCBI protein sequence of TCONS_00057148-protein >TCONS_00057148-protein ID=TCONS_00057148-protein|Name=TCONS_00057148-protein|organism=Clytia hemisphaerica|type=polypeptide|length=387bp
MDDYPQDYAEFIENGEHINNYMDRMGNSGEWADAAIIRATADALQIEIHV
ISSNMDHIETFTPPGHTETIFLGQVMNIHYVSTSNIRQPQTIPFGGVTSD
GISLTDTSGMNISLTWFFNFMKKNPVLTQKISDLKATASKKLMRSFGQFR
VGKSAEAKRLWYELIKSRKLPLSTSSVNAANISDLICLEPVHNHGLTKFM
YKKAYGSCSSKDCKWKIPDSREFELNRTSIDLIKTFHIGERERCPECAGH
FIGENRLTVASPFLIIFGDGNSMHSFPESVILKENDHPLCYDLQFISLKT
ENTKRCHYSSFMKYGDTHWTFFEQFVSGNPIRNFLTLPRDTEQQISFVIY
ICLALLQSFSPTFRQLGKKRSIKNDNQKPNKCKKVIQ Run BLAST on NCBI transcript from alignment at scaffold_285:390908..392071 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057148 ID=TCONS_00057148|Name=TCONS_00057148|organism=Clytia hemisphaerica|type=transcript|length=1164bp|location=Sequence derived from alignment at scaffold_285:390908..392071 (Clytia hemisphaerica)
TTCTGGATCACTTTCTTACACTTGTTTGGCTTttgattatcatttttgat
GCTGCGTTTTTTGCCTAGTTGTCGGAATGTAGGTGAAAACGACTGAAGTA
ATGCCAAGCAAAtgtaaataacaaaagaaatctgcTGTTCCGTATCTCTT
GGCAATGTCAAAAAGTTTCGGATTGGATTTCCAGATacaaattgttcaaa
aaatgtCCAGTGTGTGTCACCATATTTCATAAACGAGCTATAATGACATC
TTTTAGTGTTTTCAGTTTTAAGTGAGATAAACTGAAGGTCATAGCACAGG
GGGtgatcattttctttcaaaatgactGACTCAGGGAAACTATGCATGGA
GTTTCCATCTCCAAAGATAATAAGGAAGGGAGAAGCTACCGTCAATCTAT
TCTCACCAATAAAATGGCCCGCGCACTCTGGACATCTCTCTCTTTCACCG
ATGTGGAAAGTTTTAATTAGGTCAATCGATGTTCTATTGAGCTCGAACTC
GCGACTATCAGGTATTTTCCACTTGCAGTCTTTAGAACTGCAAGATCCGT
ATGCTTTTTTGTACATAAATTTTGTTAGCCCATGATTATGCACAGGTTCC
AAACAAATTAGATCACTGATATTAGCAGCGTTAACTGATGACGTAGATAG
AGGAAGTTTCCTACTCTTTATCAACTCATACCACAACCTTTTAGCTTCCG
CCGACTTTCCGACCCGAAATTGCCCAAAACTCCTCATTAGCTTTTTTGAA
GCAGTAGCTTTTAAGTCACTGATTTTTTGGGTTAgcactggatttttttt
cataaaattaaaaaaccaTGTTAGAGAGATGTTCATTCCCGAAGTATCTG
TTAGACTTATTCCATCAGACGTGACCCCACCGAATGGTATTGTTTGGGGC
TGCCTGATGTTGCTGGTGGAAACGTAGTGGATGTTCATGACTTGACCAAG
AAAAATTGTTTCTGTGTGGCCTGGTGGTGTGAAAGTTTCGATGTGGTCCA
TATTTGAGCTTATTACATGGATCTCAATTTGTAATGCATCTGCCGTGGCT
CGAATGATGGCAGCATCGGCCCACTCACCGGAATTTCCCATTCTATCCAT
ATAATTATTGATATGCTCGCCATTTTCAATAAATTCTGCGTAGTCCTGAG
GGTAATCATCCATT Coding sequence (CDS) from alignment at scaffold_285:390908..392071 >TCONS_00057148 ID=TCONS_00057148|Name=TCONS_00057148|organism=Clytia hemisphaerica|type=CDS|length=1161bp|location=Sequence derived from alignment at scaffold_285:390908..392071 (Clytia hemisphaerica)
CTGGATCACTTTCTTACACTTGTTTGGCTTttgattatcatttttgatGC
TGCGTTTTTTGCCTAGTTGTCGGAATGTAGGTGAAAACGACTGAAGTAAT
GCCAAGCAAAtgtaaataacaaaagaaatctgcTGTTCCGTATCTCTTGG
CAATGTCAAAAAGTTTCGGATTGGATTTCCAGATacaaattgttcaaaaa
atgtCCAGTGTGTGTCACCATATTTCATAAACGAGCTATAATGACATCTT
TTAGTGTTTTCAGTTTTAAGTGAGATAAACTGAAGGTCATAGCACAGGGG
GtgatcattttctttcaaaatgactGACTCAGGGAAACTATGCATGGAGT
TTCCATCTCCAAAGATAATAAGGAAGGGAGAAGCTACCGTCAATCTATTC
TCACCAATAAAATGGCCCGCGCACTCTGGACATCTCTCTCTTTCACCGAT
GTGGAAAGTTTTAATTAGGTCAATCGATGTTCTATTGAGCTCGAACTCGC
GACTATCAGGTATTTTCCACTTGCAGTCTTTAGAACTGCAAGATCCGTAT
GCTTTTTTGTACATAAATTTTGTTAGCCCATGATTATGCACAGGTTCCAA
ACAAATTAGATCACTGATATTAGCAGCGTTAACTGATGACGTAGATAGAG
GAAGTTTCCTACTCTTTATCAACTCATACCACAACCTTTTAGCTTCCGCC
GACTTTCCGACCCGAAATTGCCCAAAACTCCTCATTAGCTTTTTTGAAGC
AGTAGCTTTTAAGTCACTGATTTTTTGGGTTAgcactggattttttttca
taaaattaaaaaaccaTGTTAGAGAGATGTTCATTCCCGAAGTATCTGTT
AGACTTATTCCATCAGACGTGACCCCACCGAATGGTATTGTTTGGGGCTG
CCTGATGTTGCTGGTGGAAACGTAGTGGATGTTCATGACTTGACCAAGAA
AAATTGTTTCTGTGTGGCCTGGTGGTGTGAAAGTTTCGATGTGGTCCATA
TTTGAGCTTATTACATGGATCTCAATTTGTAATGCATCTGCCGTGGCTCG
AATGATGGCAGCATCGGCCCACTCACCGGAATTTCCCATTCTATCCATAT
AATTATTGATATGCTCGCCATTTTCAATAAATTCTGCGTAGTCCTGAGGG
TAATCATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057148-exon-scaffold_285-1491911889:390908..392071 | TCONS_00057148-exon-scaffold_285-1491911889:390908..392071 | Clytia hemisphaerica | exon |
| TCONS_00057148-exon-scaffold_285-1510915933:390908..392071 | TCONS_00057148-exon-scaffold_285-1510915933:390908..392071 | Clytia hemisphaerica | exon |
| TCONS_00057148-exon-scaffold_285-1575043694:390908..392071 | TCONS_00057148-exon-scaffold_285-1575043694:390908..392071 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_285 | supercontig | scaffold_285:390908..392071 . |
Blast
The following BLAST results are available for this feature:
|
