|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057147 ID=TCONS_00057147|Name=TCONS_00057147|organism=Clytia hemisphaerica|type=transcript|length=2549bp
atgaatgaaaaaaaaaattgatttccaTTAACTTAATTTTGAATCGGTTT
CCTATTGTCTCGAAACTTGTTTTAATATTATTAACGAGTAATTTGAGcct
ttacatttttttctatgaaaacgCACATGAGAGAATgtttactttttgat
aaaacaaaaggcTCTTTTGTGGTGAGATAAAAGAATGTGACGTAATACCG
ATTATGGGTcgtgattggttgatttttaaCAATCGAGAACAAAAGAGAAG
AGATACTATTGCATTGTCTGAAACACATGGCCGTACGTTCCAAATGTATT
TGAATGAATCACAGCAGAAAGAAAGTGTATATAAACAACTTGAGCGCGCA
CGCTGGAAATAGTAAAGTTTTGCTTGTCGAAGAAGTTAGACAACATTTGA
AGTAACAAATTTATATTTGCACATTTGCAAGAAGAAATCATGATTCGCTC
AAGAGAAAGCAGTTTGAAAGCAACTTTGGAAAGGATGGATTTTACAGAAA
AACCACAGTACAACGTTTTCGAGGATTATTTGGGCTTGATAAATTTGGTT
TGCCCAGCTACCTCCACAACTGATTCAACAAGTTCTTCTCCGATTCCATC
ACCATGTGGTTCTGTTTACGATTTTGCAACAGAATCTTCCAGCATGATGC
ATCGTCACAGAATGAACAGCTTGGATTCTGACAGCCTCAGCGACAGCTCA
TCGTCAGGAGAAAGTCGTGAAGACGATTTGATGTTTGTCTATCCGCCACC
TCCAACTAAGACAGTTCCTCGTGCACCTTCACCGCCCATGCGAGCCATCC
TGGAAACACCTCCATACCCACCACCCTCGTTGGAAACTTTGATCGCCCAG
AAAGCCGTTCTCAGCCGTCTTCAACAGATTCCAATGAACCCTGGACCTTT
CCACTCTTCCCACCACAACCGTAAGAACGCAGCTAAAGCGACCGTTTGTG
TTTTCTGTCGAAACAATGGCGAATCTCGTGAATTCTACAGCTCCCACACG
CTCAAAGACAGTGAAGGTAACACATCTTGTCCTATTTTGAGAGCTTACAC
TTGCCCGCTTTGCAAGGCTAACGGTGACAGTAGCCACACAGTGAAATATT
GTCCTAAGTACACTCCAAAAGTAAAAGCTGAGAAATTACTTCATTTAAAT
TTAGGCTTACAccaattgtaaatttttttaatcatcaatattgaactttt
tttgaattttttaagatttttattcccaaattgtttatatttaaattggt
ttatgtagatttttttcttttggtttcAAATTTTGTCACTTTGTGATGCA
TGTGGTCTGAGGTCTGAAGCGCTTAAACTTATGCAATATTTTACTTGTAC
TTTTTAAGAGTTGGCCAAGTTTGGCTTCTGAAAATTAATGCCCTTGTCTA
ATAAGAATTTTGAACGATTTTTGGTTTCAACTTTTAAAGCGATAACAAAA
TTTTTCGGCAGATTTTCTTGTAATCAaagaaacaaactttttctcgTCTT
AAATTGCATGCATGCTTTGTGAAAATTGTCTGAAAAGCACACTTCTAGAC
CCTTTTACTCAAATCTCAAATGACATATAGGAAAATTCTGTTTGTTTACC
TTCGATGAAGTGATACttgttaaaagttttgttttaatTACAAATTTTTT
GATGTCAGGCCAGGGAATCGCCTATCGTTCACTCTCCTAAAAAGTTTGTT
ATTTTAACGACTCTAGTAATGATTTTGCGGTTTTCCACTACATTATTATT
CATTCAGTCCTTCTTGCAGTAGAGTTTGTTGCTTTTTTTGTTCGAGAGTT
TTGCATATTCTCAGGcgaactcaaaaaaaaattgagacttAAAATTGTAT
TTGTGTTTGCCTCAAAATTCAAACAGTGTTTGTCTCTTGTTCGTTGactt
taaaatcatttgttttcaaaaattttttaaacggttatatacaagaatat
tttattcaagaaattttttcaaaattataatcaTATATATTTAGGagtaa
aatagaaatttttatattcCCAAGTCCCCAATCCATTCCAAATTCTCATC
GATTTCCTTGTTGCCCATCCCTCTCCCCGCCTATGTCCCTTGCGTTTTCC
CTCTTGGTCCCAATTTTTATCCCCCCAGCCCAAAAATTCCCGTGAAATTt
atttagatgaaaaaattatgCACTTAAAATGTgaattttgttaatattga
atTTTATGTTAGATTTTTTTGTGTACAGTTGTATTTGTTTAAAAAGATAG
TCTTATAAATTTTAGagataaaaatcacaaatttaatttttttcaatatc
aaaTTTTATTCTGAGCTGTTTTTGCCTTCAAAGGGGTGTCAAATGAAATT
TAAATGACACTGCAATTATTGGTACAATGACTCTAACCCCTTTGAGAGCG
ATTATAACTATTGGTGTTTATAATGATAATCGATTTTTAATTAATATAGT
GttctataaaaagaaaatcttgcaaaattgaaaagaaatttgacgGTTCA
TATCCCATCCCTGTCTCACATTGAAACTTTTAACAAACTTTTCGACCAC Run BLAST on NCBI protein sequence of Nanos1 >TCONS_00057147-protein ID=TCONS_00057147-protein|Name=Nanos1|organism=Clytia hemisphaerica|type=polypeptide|length=243bp
MIRSRESSLKATLERMDFTEKPQYNVFEDYLGLINLVCPATSTTDSTSSS
PIPSPCGSVYDFATESSSMMHRHRMNSLDSDSLSDSSSSGESREDDLMFV
YPPPPTKTVPRAPSPPMRAILETPPYPPPSLETLIAQKAVLSRLQQIPMN
PGPFHSSHHNRKNAAKATVCVFCRNNGESREFYSSHTLKDSEGNTSCPIL
RAYTCPLCKANGDSSHTVKYCPKYTPKVKAEKLLHLNLGLHQL Run BLAST on NCBI transcript from alignment at scaffold_285:373030..375578 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057147 ID=TCONS_00057147|Name=TCONS_00057147|organism=Clytia hemisphaerica|type=transcript|length=2549bp|location=Sequence derived from alignment at scaffold_285:373030..375578 (Clytia hemisphaerica)
GTGGTCGAAAAGTTTGTTAAAAGTTTCAATGTGAGACAGGGATGGGATAT
GAACcgtcaaatttcttttcaattttgcaagattttctttttatagaaCA
CTATATTAATTAAAAATCGATTATCATTATAAACACCAATAGTTATAATC
GCTCTCAAAGGGGTTAGAGTCATTGTACCAATAATTGCAGTGTCATTTAA
ATTTCATTTGACACCCCTTTGAAGGCAAAAACAGCTCAGAATAAAAtttg
atattgaaaaaaattaaatttgtgatttttatctCTAAAATTTATAAGAC
TATCTTTTTAAACAAATACAACTGTACACAAAAAAATCTAACATAAAatt
caatattaacaaaattcACATTTTAAGTGcataattttttcatctaaata
AATTTCACGGGAATTTTTGGGCTGGGGGGATAAAAATTGGGACCAAGAGG
GAAAACGCAAGGGACATAGGCGGGGAGAGGGATGGGCAACAAGGAAATCG
ATGAGAATTTGGAATGGATTGGGGACTTGGgaatataaaaatttctattt
tactCCTAAATATATAtgattataattttgaaaaaatttcttgaataaaa
tattcttgtatataaccgtttaaaaaatttttgaaaacaaatgattttaa
agtCAACGAACAAGAGACAAACACTGTTTGAATTTTGAGGCAAACACAAA
TACAATTTTaagtctcaatttttttttgagttcgCCTGAGAATATGCAAA
ACTCTCGAACAAAAAAAGCAACAAACTCTACTGCAAGAAGGACTGAATGA
ATAATAATGTAGTGGAAAACCGCAAAATCATTACTAGAGTCGTTAAAATA
ACAAACTTTTTAGGAGAGTGAACGATAGGCGATTCCCTGGCCTGACATCA
AAAAATTTGTAattaaaacaaaacttttaacaaGTATCACTTCATCGAAG
GTAAACAAACAGAATTTTCCTATATGTCATTTGAGATTTGAGTAAAAGGG
TCTAGAAGTGTGCTTTTCAGACAATTTTCACAAAGCATGCATGCAATTTA
AGAcgagaaaaagtttgtttcttTGATTACAAGAAAATCTGCCGAAAAAT
TTTGTTATCGCTTTAAAAGTTGAAACCAAAAATCGTTCAAAATTCTTATT
AGACAAGGGCATTAATTTTCAGAAGCCAAACTTGGCCAACTCTTAAAAAG
TACAAGTAAAATATTGCATAAGTTTAAGCGCTTCAGACCTCAGACCACAT
GCATCACAAAGTGACAAAATTTgaaaccaaaagaaaaaaatctacataaa
ccaatttaaatataaacaatttgggaataaaaatcttaaaaaattcaaaa
aaagttcaatattgatgattaaaaaaatttacaattggTGTAAGCCTAAA
TTTAAATGAAGTAATTTCTCAGCTTTTACTTTTGGAGTGTACTTAGGACA
ATATTTCACTGTGTGGCTACTGTCACCGTTAGCCTTGCAAAGCGGGCAAG
TGTAAGCTCTCAAAATAGGACAAGATGTGTTACCTTCACTGTCTTTGAGC
GTGTGGGAGCTGTAGAATTCACGAGATTCGCCATTGTTTCGACAGAAAAC
ACAAACGGTCGCTTTAGCTGCGTTCTTACGGTTGTGGTGGGAAGAGTGGA
AAGGTCCAGGGTTCATTGGAATCTGTTGAAGACGGCTGAGAACGGCTTTC
TGGGCGATCAAAGTTTCCAACGAGGGTGGTGGGTATGGAGGTGTTTCCAG
GATGGCTCGCATGGGCGGTGAAGGTGCACGAGGAACTGTCTTAGTTGGAG
GTGGCGGATAGACAAACATCAAATCGTCTTCACGACTTTCTCCTGACGAT
GAGCTGTCGCTGAGGCTGTCAGAATCCAAGCTGTTCATTCTGTGACGATG
CATCATGCTGGAAGATTCTGTTGCAAAATCGTAAACAGAACCACATGGTG
ATGGAATCGGAGAAGAACTTGTTGAATCAGTTGTGGAGGTAGCTGGGCAA
ACCAAATTTATCAAGCCCAAATAATCCTCGAAAACGTTGTACTGTGGTTT
TTCTGTAAAATCCATCCTTTCCAAAGTTGCTTTCAAACTGCTTTCTCTTG
AGCGAATCATGATTTCTTCTTGCAAATGTGCAAATATAAATTTGTTACTT
CAAATGTTGTCTAACTTCTTCGACAAGCAAAACTTTACTATTTCCAGCGT
GCGCGCTCAAGTTGTTTATATACACTTTCTTTCTGCTGTGATTCATTCAA
ATACATTTGGAACGTACGGCCATGTGTTTCAGACAATGCAATAGTATCTC
TTCTCTTTTGTTCTCGATTGttaaaaatcaaccaatcacgACCCATAATC
GGTATTACGTCACATTCTTTTATCTCACCACAAAAGAgccttttgtttta
tcaaaaagtaaacATTCTCTCATGTGcgttttcatagaaaaaaatgtaaa
ggCTCAAATTACTCGTTAATAATATTAAAACAAGTTTCGAGACAATAGGA
AACCGATTCAAAATTAAGTTAAtggaaatcaattttttttttcattcat Coding sequence (CDS) from alignment at scaffold_285:373030..375578 >TCONS_00057147 ID=TCONS_00057147|Name=TCONS_00057147|organism=Clytia hemisphaerica|type=CDS|length=732bp|location=Sequence derived from alignment at scaffold_285:373030..375578 (Clytia hemisphaerica)
ttacaattggTGTAAGCCTAAATTTAAATGAAGTAATTTCTCAGCTTTTA
CTTTTGGAGTGTACTTAGGACAATATTTCACTGTGTGGCTACTGTCACCG
TTAGCCTTGCAAAGCGGGCAAGTGTAAGCTCTCAAAATAGGACAAGATGT
GTTACCTTCACTGTCTTTGAGCGTGTGGGAGCTGTAGAATTCACGAGATT
CGCCATTGTTTCGACAGAAAACACAAACGGTCGCTTTAGCTGCGTTCTTA
CGGTTGTGGTGGGAAGAGTGGAAAGGTCCAGGGTTCATTGGAATCTGTTG
AAGACGGCTGAGAACGGCTTTCTGGGCGATCAAAGTTTCCAACGAGGGTG
GTGGGTATGGAGGTGTTTCCAGGATGGCTCGCATGGGCGGTGAAGGTGCA
CGAGGAACTGTCTTAGTTGGAGGTGGCGGATAGACAAACATCAAATCGTC
TTCACGACTTTCTCCTGACGATGAGCTGTCGCTGAGGCTGTCAGAATCCA
AGCTGTTCATTCTGTGACGATGCATCATGCTGGAAGATTCTGTTGCAAAA
TCGTAAACAGAACCACATGGTGATGGAATCGGAGAAGAACTTGTTGAATC
AGTTGTGGAGGTAGCTGGGCAAACCAAATTTATCAAGCCCAAATAATCCT
CGAAAACGTTGTACTGTGGTTTTTCTGTAAAATCCATCCTTTCCAAAGTT
GCTTTCAAACTGCTTTCTCTTGAGCGAATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057147-exon-scaffold_285-1491911889:373030..375578 | TCONS_00057147-exon-scaffold_285-1491911889:373030..375578 | Clytia hemisphaerica | exon |
| TCONS_00057147-exon-scaffold_285-1510915933:373030..375578 | TCONS_00057147-exon-scaffold_285-1510915933:373030..375578 | Clytia hemisphaerica | exon |
| TCONS_00057147-exon-scaffold_285-1575043694:373030..375578 | TCONS_00057147-exon-scaffold_285-1575043694:373030..375578 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_285 | supercontig | scaffold_285:373030..375578 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR024161 | Znf_nanos-typ |
Blast
BLAST of TCONS_00057147 vs. Swiss-Prot (Human)
Match: NANO2 (Nanos homolog 2 OS=Homo sapiens GN=NANOS2 PE=1 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 2.137e-18 Identity = 35/60 (58.33%), Postives = 42/60 (70.00%), Query Frame = 2
Query: 926 NAAKATVCVFCRNNGESREFYSSHTLKDSEGNTSCPILRAYTCPLCKANGDSSHTVKYCP 1105
N T+C FC++NGESR YSSH LK +G CPILR Y CP+C A GD +HT+KYCP
Sbjct: 56 NGGLGTLCNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGATGDQAHTLKYCP 115
The following BLAST results are available for this feature:
|
