TCONS_00057143 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057143
Unique NameTCONS_00057143
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length439

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057143 ID=TCONS_00057143|Name=TCONS_00057143|organism=Clytia hemisphaerica|type=transcript|length=439bp
GGATGAGGTTTTACGAGCATTGATAACAACATTGTTGATGTGGTGTTTGA
ATTTGCAATCATTGGACATCAGTACTCCAAGGTCTTTGACATATTCATAT
TCTTTGATTTCAGTGTTGCTACTGCTTGTGTAGTGTGTTTCAGCTTTAAC
TTCAGTGTTTGGGCCATATCTCAGCAGCTCAAACTTGACAGCATTAAACT
CCATGTTATTATCATCTGGCCATACATAGACTGAATTTAGGTCTCCTTGA
AGTTTTTGTGTATCCTCAACGATTTCTATGCCTTTGATGACTCTCGTGTC
ATCTGCAAAGCTTCTTGTCAAAGAGGGTTGAACTTTTTCATCAATGTCCC
CCATTAAGATGAGGAAAATCAATGGTCCCAAAACACTCCCTTGTGGGACG
CCTGATATGACAGGTGTTGGGTTAGATGGAATCCCATCC
Run BLAST on NCBI

protein sequence of TCONS_00057143-protein

>TCONS_00057143-protein ID=TCONS_00057143-protein|Name=TCONS_00057143-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
DGIPSNPTPVISGVPQGSVLGPLIFLILMGDIDEKVQPSLTRSFADDTRV
IKGIEIVEDTQKLQGDLNSVYVWPDDNNMEFNAVKFELLRYGPNTEVKAE
THYTSSSNTEIKEYEYVKDLGVLMSNDCKFKHHINNVVINARKTSS
Run BLAST on NCBI

transcript from alignment at scaffold_285:316943..317381

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057143 ID=TCONS_00057143|Name=TCONS_00057143|organism=Clytia hemisphaerica|type=transcript|length=439bp|location=Sequence derived from alignment at scaffold_285:316943..317381 (Clytia hemisphaerica)
GGATGGGATTCCATCTAACCCAACACCTGTCATATCAGGCGTCCCACAAG
GGAGTGTTTTGGGACCATTGATTTTCCTCATCTTAATGGGGGACATTGAT
GAAAAAGTTCAACCCTCTTTGACAAGAAGCTTTGCAGATGACACGAGAGT
CATCAAAGGCATAGAAATCGTTGAGGATACACAAAAACTTCAAGGAGACC
TAAATTCAGTCTATGTATGGCCAGATGATAATAACATGGAGTTTAATGCT
GTCAAGTTTGAGCTGCTGAGATATGGCCCAAACACTGAAGTTAAAGCTGA
AACACACTACACAAGCAGTAGCAACACTGAAATCAAAGAATATGAATATG
TCAAAGACCTTGGAGTACTGATGTCCAATGATTGCAAATTCAAACACCAC
ATCAACAATGTTGTTATCAATGCTCGTAAAACCTCATCC

Coding sequence (CDS) from alignment at scaffold_285:316943..317381

>TCONS_00057143 ID=TCONS_00057143|Name=TCONS_00057143|organism=Clytia hemisphaerica|type=CDS|length=438bp|location=Sequence derived from alignment at scaffold_285:316943..317381 (Clytia hemisphaerica)
GATGGGATTCCATCTAACCCAACACCTGTCATATCAGGCGTCCCACAAGG
GAGTGTTTTGGGACCATTGATTTTCCTCATCTTAATGGGGGACATTGATG
AAAAAGTTCAACCCTCTTTGACAAGAAGCTTTGCAGATGACACGAGAGTC
ATCAAAGGCATAGAAATCGTTGAGGATACACAAAAACTTCAAGGAGACCT
AAATTCAGTCTATGTATGGCCAGATGATAATAACATGGAGTTTAATGCTG
TCAAGTTTGAGCTGCTGAGATATGGCCCAAACACTGAAGTTAAAGCTGAA
ACACACTACACAAGCAGTAGCAACACTGAAATCAAAGAATATGAATATGT
CAAAGACCTTGGAGTACTGATGTCCAATGATTGCAAATTCAAACACCACA
TCAACAATGTTGTTATCAATGCTCGTAAAACCTCATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036002XLOC_036002Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057143-exon-scaffold_285-1491911889:316943..317381TCONS_00057143-exon-scaffold_285-1491911889:316943..317381Clytia hemisphaericaexon
TCONS_00057143-exon-scaffold_285-1510915933:316943..317381TCONS_00057143-exon-scaffold_285-1510915933:316943..317381Clytia hemisphaericaexon
TCONS_00057143-exon-scaffold_285-1575043694:316943..317381TCONS_00057143-exon-scaffold_285-1575043694:316943..317381Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057143-proteinTCONS_00057143-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:316943..317381 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.0581	0.575794	3.17954	1.95828	1.5612	2.86412	1.04327	0.843529	0.548858	0.886143	0.464261	1.87354	1.17639	2.24583	0.546837	1.09807	1.41939	1.28145	0.407101	0.892255	0.633945	0	0.848297	0.562735	1.85102	0.723028	2.04242	0.839036	1.46062	1.47668
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057143 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top