TCONS_00057137 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057137
Unique NameTCONS_00057137
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length341

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057137 ID=TCONS_00057137|Name=TCONS_00057137|organism=Clytia hemisphaerica|type=transcript|length=341bp
CAGCTCTCACTctgaatttttccaaaatctcaaaaattacaGATATTCCT
TTTGATTGTTGaaggaacttttggattgttacaGGGTAAGTACGATACTC
CCAAACGACTGTGTGTCCactgtatttttattgttcgtgggaaaatattt
gattttaaaattctttaaaaataattcaaaaacattttaataaaaCAGTT
AACAAAATGATTTAAGAGTTAATTACTTATTCTTTTTTCCAGATATCTAC
TCTATTGTTCTCCAAACTCCCAAGGGAATTGCCAAATGAACCACGGAGGA
GGAAAACCTCCTCGCGTGGGCAATTTTAGCCTTCACCTGTC
Run BLAST on NCBI

transcript from alignment at scaffold_285:204203..204543

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057137 ID=TCONS_00057137|Name=TCONS_00057137|organism=Clytia hemisphaerica|type=transcript|length=341bp|location=Sequence derived from alignment at scaffold_285:204203..204543 (Clytia hemisphaerica)
GACAGGTGAAGGCTAAAATTGCCCACGCGAGGAGGTTTTCCTCCTCCGTG
GTTCATTTGGCAATTCCCTTGGGAGTTTGGAGAACAATAGAGTAGATATC
TGGAAAAAAGAATAAGTAATTAACTCTTAAATCATTTTGTTAACTGtttt
attaaaatgtttttgaattatttttaaagaattttaaaatcaaatatttt
cccacgaacaataaaaatacagtGGACACACAGTCGTTTGGGAGTATCGT
ACTTACCCtgtaacaatccaaaagttccttCAACAATCAAAAGGAATATC
tgtaatttttgagattttggaaaaattcagAGTGAGAGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035996XLOC_035996Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057137-exon-scaffold_285-1491911889:204203..204543TCONS_00057137-exon-scaffold_285-1491911889:204203..204543Clytia hemisphaericaexon
TCONS_00057137-exon-scaffold_285-1510915933:204203..204543TCONS_00057137-exon-scaffold_285-1510915933:204203..204543Clytia hemisphaericaexon
TCONS_00057137-exon-scaffold_285-1575043694:204203..204543TCONS_00057137-exon-scaffold_285-1575043694:204203..204543Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:204203..204543 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.71923	6.55231	5.47766	2.38179	0	0	0	0	0	0	0	0.178999	0.17875	0	0.152616	0	0	0.206802	0	0	0.259861	0.760507	3.08165	3.08184	0	0	0.368536	0	2.3865	1.51967
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057137 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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