TCONS_00057136 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057136
Unique NameTCONS_00057136
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length450

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057136 ID=TCONS_00057136|Name=TCONS_00057136|organism=Clytia hemisphaerica|type=transcript|length=450bp
CGTCGCATTCCCCTAAACGACTGTAACTTCTCATAAATGGCCCCCTTAAT
AGGGGAAcgatattcaattttgttttcgttttatttattttggtcACACG
AGTCCATTTCATTCAAATTCACTCTCGACTTGAAAtataaattataataa
attaaaataagttaaaataaattacaatattgacataattttacaaaatt
caCATAATTCATCTACACATATAAATAACTTCAAAAGGCAATGTCTGGCA
GATTCCAAACTAATNGCGATATTCAGTTTTGTTTTCGTTTCATTTATTTT
GGTCACACGAGTCCATTTCATTCAAATTCACTCTCGACTTGGAAtataaa
ttataataaattaaaataagttaaaataaattacaatattgacataattt
tacaaaattcaCATAATTCATCTACACATATAAACAACTTTAAAAGGCTA
Run BLAST on NCBI

transcript from alignment at scaffold_285:181690..182139

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057136 ID=TCONS_00057136|Name=TCONS_00057136|organism=Clytia hemisphaerica|type=transcript|length=450bp|location=Sequence derived from alignment at scaffold_285:181690..182139 (Clytia hemisphaerica)
TAGCCTTTTAAAGTTGTTTATATGTGTAGATGAATTATGtgaattttgta
aaattatgtcaatattgtaatttattttaacttattttaatttattataa
tttataTTCCAAGTCGAGAGTGAATTTGAATGAAATGGACTCGTGTGACC
AAAATAAATGAAACGAAAACAAAACTGAATATCGCNATTAGTTTGGAATC
TGCCAGACATTGCCTTTTGAAGTTATTTATATGTGTAGATGAATTATGtg
aattttgtaaaattatgtcaatattgtaatttattttaacttattttaat
ttattataatttataTTTCAAGTCGAGAGTGAATTTGAATGAAATGGACT
CGTGTgaccaaaataaataaaacgaaaacaaaattgaatatcgTTCCCCT
ATTAAGGGGGCCATTTATGAGAAGTTACAGTCGTTTAGGGGAATGCGACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035995XLOC_035995Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057136-exon-scaffold_285-1491911889:181690..182139TCONS_00057136-exon-scaffold_285-1491911889:181690..182139Clytia hemisphaericaexon
TCONS_00057136-exon-scaffold_285-1510915933:181690..182139TCONS_00057136-exon-scaffold_285-1510915933:181690..182139Clytia hemisphaericaexon
TCONS_00057136-exon-scaffold_285-1575043694:181690..182139TCONS_00057136-exon-scaffold_285-1575043694:181690..182139Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:181690..182139 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.588842	0.143553	0	0.326139	0	0.156874	0.189262	0.531555	0.372155	0.307316	0	0.294124	0.293715	1.42346	0	0.179412	0.552552	0.226539	0.312976	0.327507	2.98896	1.66618	2.02546	1.99489	2.21275	1.41059	0	0.215425	0.163392	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057136 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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