TCONS_00057131 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057131
Unique NameTCONS_00057131
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length475

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057131 ID=TCONS_00057131|Name=TCONS_00057131|organism=Clytia hemisphaerica|type=transcript|length=475bp
CTTGCACCGAATCGAAACATTGCTCTACGTGTGTACAATCAACAAGTCAA
ACGTCTTGCAAAGAATCAGCAGGACAAGGATGACATAATCCAATCGGAAT
CCAAACTTCGATCACTTGGTTATTTCGAGTATGTAAAGAACCTACCAATT
GATCAACAAAGAATGCTCCAATCAAACCCTGTGCAAAACTTCATTCCCTG
GCGTGCAGTCTGGAAACCATCATCAATCTCCACACCATGTCGTGTCGTCT
ATGATGCTTCAATGCCAACTGAATCTGGGAAATCACTGAACGACATCCTA
CCCAAAGGACGAAATGGTATGAATAAACTTCTTGAAATCTTCCTTCGGTG
GAGGGGACATAGATTTGCATTCCACACTGACATCCAGAAGATGTATAACA
CAATCAAGCTCGATCAATCTCACTGGTGTTTGCAACGATACCTATGGCAT
GAATCACTTGCCCATGATGCATCAC
Run BLAST on NCBI

protein sequence of TCONS_00057131-protein

>TCONS_00057131-protein ID=TCONS_00057131-protein|Name=TCONS_00057131-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
LAPNRNIALRVYNQQVKRLAKNQQDKDDIIQSESKLRSLGYFEYVKNLPI
DQQRMLQSNPVQNFIPWRAVWKPSSISTPCRVVYDASMPTESGKSLNDIL
PKGRNGMNKLLEIFLRWRGHRFAFHTDIQKMYNTIKLDQSHWCLQRYLWH
ESLAHDAS
Run BLAST on NCBI

transcript from alignment at scaffold_285:6813..7287

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057131 ID=TCONS_00057131|Name=TCONS_00057131|organism=Clytia hemisphaerica|type=transcript|length=475bp|location=Sequence derived from alignment at scaffold_285:6813..7287 (Clytia hemisphaerica)
GTGATGCATCATGGGCAAGTGATTCATGCCATAGGTATCGTTGCAAACAC
CAGTGAGATTGATCGAGCTTGATTGTGTTATACATCTTCTGGATGTCAGT
GTGGAATGCAAATCTATGTCCCCTCCACCGAAGGAAGATTTCAAGAAGTT
TATTCATACCATTTCGTCCTTTGGGTAGGATGTCGTTCAGTGATTTCCCA
GATTCAGTTGGCATTGAAGCATCATAGACGACACGACATGGTGTGGAGAT
TGATGATGGTTTCCAGACTGCACGCCAGGGAATGAAGTTTTGCACAGGGT
TTGATTGGAGCATTCTTTGTTGATCAATTGGTAGGTTCTTTACATACTCG
AAATAACCAAGTGATCGAAGTTTGGATTCCGATTGGATTATGTCATCCTT
GTCCTGCTGATTCTTTGCAAGACGTTTGACTTGTTGATTGTACACACGTA
GAGCAATGTTTCGATTCGGTGCAAG

Coding sequence (CDS) from alignment at scaffold_285:6813..7287

>TCONS_00057131 ID=TCONS_00057131|Name=TCONS_00057131|organism=Clytia hemisphaerica|type=CDS|length=474bp|location=Sequence derived from alignment at scaffold_285:6813..7287 (Clytia hemisphaerica)
TGATGCATCATGGGCAAGTGATTCATGCCATAGGTATCGTTGCAAACACC
AGTGAGATTGATCGAGCTTGATTGTGTTATACATCTTCTGGATGTCAGTG
TGGAATGCAAATCTATGTCCCCTCCACCGAAGGAAGATTTCAAGAAGTTT
ATTCATACCATTTCGTCCTTTGGGTAGGATGTCGTTCAGTGATTTCCCAG
ATTCAGTTGGCATTGAAGCATCATAGACGACACGACATGGTGTGGAGATT
GATGATGGTTTCCAGACTGCACGCCAGGGAATGAAGTTTTGCACAGGGTT
TGATTGGAGCATTCTTTGTTGATCAATTGGTAGGTTCTTTACATACTCGA
AATAACCAAGTGATCGAAGTTTGGATTCCGATTGGATTATGTCATCCTTG
TCCTGCTGATTCTTTGCAAGACGTTTGACTTGTTGATTGTACACACGTAG
AGCAATGTTTCGATTCGGTGCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035990XLOC_035990Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057131-exon-scaffold_285-1491911889:6813..7287TCONS_00057131-exon-scaffold_285-1491911889:6813..7287Clytia hemisphaericaexon
TCONS_00057131-exon-scaffold_285-1510915933:6813..7287TCONS_00057131-exon-scaffold_285-1510915933:6813..7287Clytia hemisphaericaexon
TCONS_00057131-exon-scaffold_285-1575043694:6813..7287TCONS_00057131-exon-scaffold_285-1575043694:6813..7287Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057131-proteinTCONS_00057131-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:6813..7287 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.52888	2.22624	0.778781	0.590974	0.539591	0.426392	0	0.213914	0.261332	1.6706	0	0.831109	0	0.184239	0	0	0.400496	0.102624	0.141781	0	0.351947	0.925926	0.024345	0.139031	0	0.127802	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057131 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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