TCONS_00057130 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057130
Unique NameTCONS_00057130
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length454

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057130 ID=TCONS_00057130|Name=TCONS_00057130|organism=Clytia hemisphaerica|type=transcript|length=454bp
CAGCATCAACTCTAAACACTAAAGAAGTGAATTCAAAGGACAAGAATATA
TTTTATGCACATGACAAACCAAAAAGATGTGCTTATGAGAATGTGATATC
GAATCATACTTTTATTTTGAACAAACAAGCAGGTGTGTTCACGCACCTTG
GTCACACGAAGGATATTCACCAGTGCAAACAAATGTGTTGCCAGGTTTCA
GATTGTGATGTAGCATTTATGCCGGAGAATCATTGTTACGGCGTCTCATG
CTATTCTGATCAACACTGTCAGACGACACCAGCGACTGCCGAAGCATTTA
ACGTCAAATTAGTAAAAGTCCGTCGCGTCGTTATCCCGACTCCCGACGAC
TTTTATGAAGAAGACTATAGTCGATCGGGGGTACCGGAGATTGCAGTCGC
AAAACAAaagattgaagaagaaaaagtgaagccaaaCACAACGAAggaag
aaaa
Run BLAST on NCBI

protein sequence of TCONS_00057130-protein

>TCONS_00057130-protein ID=TCONS_00057130-protein|Name=TCONS_00057130-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
ASTLNTKEVNSKDKNIFYAHDKPKRCAYENVISNHTFILNKQAGVFTHLG
HTKDIHQCKQMCCQVSDCDVAFMPENHCYGVSCYSDQHCQTTPATAEAFN
VKLVKVRRVVIPTPDDFYEEDYSRSGVPEIAVAKQKIEEEKVKPNTTKEE
Run BLAST on NCBI

transcript from alignment at scaffold_285:608540..612351-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057130 ID=TCONS_00057130|Name=TCONS_00057130|organism=Clytia hemisphaerica|type=transcript|length=3812bp|location=Sequence derived from alignment at scaffold_285:608540..612351- (Clytia hemisphaerica)
CAGCATCAACTCTAAACACTAAAGAAGTGAATTCAAAGGACAAGAATATA
TTTTATGCACATGACAAACCAAAAAGATGTGCTTATGAGAATGTGATATC
GAATCATACTTTTATTTTGAACAAACAAGCAGGTGTGTTCACGCACCTTG
GTCACACGAAGGATATTCACCAGTGCAAACAAATGTGTTGCCAGGTAAGC
AAGATAATGCAATCAACCCTTTCTGACTTCCCGAATTCGAAGAAAACTGG
TCCCTTGAAATTCGAAGAGATTCAATTTACAATTTCTTTTTATACACCTT
TTCGACCGTAGCCGCCAATGGCCGTGCAAGCATTTTTTTTGCTCATTTTA
CCACCCTAAAACCGCCCCAGTCTTTTTTCGAACCTAAAGTTAATAGAAAT
AAACCAGCCGAGGCTGGAAGGTCAGCCAATAGAGCTTAGCTAGATAGCTT
TAATAAGGGGGTTAACAGATGTAAGAGATGTACTGAAACAGAGTAGACCA
AAAATGTTGAATAATGTACAAAATGTGAAACATTTGATAACTTGATTTAA
AATTATTTAAAACAAGCCTGAGAGCTCCTCCAACCCCCCCCCCCCCCCCC
AACTGTTTCTACGACATCAAACAATTAAGCTATAGTTCATTACTATAAAA
TAAAAGAGAAACATAGTGTAATTAAAACTTTTTGTTAATTTGATTCCAGT
CAGTTATGATACATTTTCTTCTGTTGGATGTAGACAATATCCATATCTAA
CCAAAGTGTTATCTAGAAATAAATTAGCAAATTGCCAAAACGTTAGAACC
AAAATAAAGATATCCATCAAATATACATAGAAATTGTACTTTTTGTTTTA
CTTGATAAAACTCCAATAACACTTTAAACTAACAAGCTACAAACTTTNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNGACTGCTATTCAGTCAAAGCCATAATTTGGCAAGGTCAGAA
AAACATAATTTACATCCAGTCTTCGTAAATAAATTTTGTAGTTTAGTACC
GTCGAGTTACACAACATGCACACAACCATCTTGAAGACTTTGCTGGATAA
TCGAAAGCAAAACTTAAAATTCATAACTATTCAAGGAAGCTCATTTTTCC
CCCATTTTGCTTTAAACTCCCTTTTGATTGGTCTATGAATTTGGGCGATC
GCTTTACCGCCTTGACAGAATAAACACACGACCATANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAGAGT
CGGAAAGCTTTTCCGCTGCTTTGCTGGATTTCCAATGTCGACCTCTGCAC
GCTCTGTGTTTACAAGTTTTCAAATCGAAGTAGCGAGCCGCTACCCTGAG
TATCAAAGGTTAAGTTTTCGTAGAATATATTAACCTCTGAAGACCGATAA
TAGAAATTTTATCGCGCATGTGTCAATCTAATCAATGTAGAAAGAATCAG
AGATGAAGAGCAAATAATACCTTATTAATGTCTAGCAAACTGTATCAGTA
TGCAGTTTACTATTTACGAATTCCCCAGAAACCTCCNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAGGTAGAGTTGG
AGAGTCGGAAAGCTTTTCCGCTGCTTTGCTGGATTTCCAATGTCGACCTC
TGCACGCTCTGTGTTTACAAGTTTTCAAATCGAAGTAGCGAGATGCATGC
TAATGGAGAGTAAACCGAAAACCAGTTTATCCACGGTTTCTCAATTTCTT
AATTCAGATCAGTCCACACGGATTCCCTTTCAACAAGATGTATAGCTGCT
TCTTAAAAGATTTTCGACCGACCGACCGACCCCCACTTTTAAAAAAAATG
ACGGGAATCAAATAATTTTTTGCGATTCGCCTTATCAAACACTTCAAACC
AAGTCCAAAAAAGCACGATTGCATCCAGGCTTTATCAAATTTAGACAGTA
GCTGTACTTTTTTTTCCGTCTTATGGAACTGGACGTGGAAAATTTTACCT
ATTTGAATGCTCAGCTTAGGCTGACCAATAAGTGTAAACAAAGGATTGGA
TCGAGATTGGGGTGATAAATTAAATAATAAAGTGGCACGCGCCTGACAGC
ACGACTGCGGTCGAAAAGGTGTATTGACCAATTTACAATTTCATTGTATT
GATCCTCTGTCCTTGTTTCCAATAGAAACTTAAGAATTAGGAAATATCCC
TGTCTGCTTATAATGATTTTTGACAAAAATGATCTATCATAAAAAGTCAG
AAAGAATATTTAGATAAATTAGTGGCAAAGACGCTAAATAATTTATTTTT
CATTCATTGGAAAGAGAGAAAAATTTTCATTAAATAAATAAACTATTTCC
AGGTTTCAGATTGTGATGTAGCATTTATGCCGGAGAATCATTGTTACGGC
GTCTCATGCTATTCTGATCAACACTGTCAGACGACACCAGCGACTGCCGA
AGCATTTAACGTCAAATTAGTAAAAGTCCGTCGCGTCGTTATCCCGACTC
CCGACGACTTTTATGAAGAAGACTATAGTCGATCGGGGGTACCGGAGATT
GCAGTCGCAAAACAAAAGATTGAAGAAGAAAAAGTGAAGCCAAACACAAC
GAAGGAAGAAAA

Coding sequence (CDS) from alignment at scaffold_285:608540..612351-

>TCONS_00057130 ID=TCONS_00057130|Name=TCONS_00057130|organism=Clytia hemisphaerica|type=CDS|length=900bp|location=Sequence derived from alignment at scaffold_285:608540..612351- (Clytia hemisphaerica)
GTTTCAGATTGTGATGTAGCATTTATGCCGGAGAATCATTGTTACGGCGT
CTCATGCTATTCTGATCAACACTGTCAGACGACACCAGCGACTGCCGAAG
CATTTAACGTCAAATTAGTAAAAGTCCGTCGCGTCGTTATCCCGACTCCC
GACGACTTTTATGAAGAAGACTATAGTCGATCGGGGGTACCGGAGATTGC
AGTCGCAAAACAAAAGATTGAAGAAGAAAAAGTGAAGCCAAACACAACGA
AGGAAGAAGCATCAACTCTAAACACTAAAGAAGTGAATTCAAAGGACAAG
AATATATTTTATGCACATGACAAACCAAAAAGATGTGCTTATGAGAATGT
GATATCGAATCATACTTTTATTTTGAACAAACAAGCAGGTGTGTTCACGC
ACCTTGGTCACACGAAGGATATTCACCAGTGCAAACAAATGTGTTGCCAG
GTTTCAGATTGTGATGTAGCATTTATGCCGGAGAATCATTGTTACGGCGT
CTCATGCTATTCTGATCAACACTGTCAGACGACACCAGCGACTGCCGAAG
CATTTAACGTCAAATTAGTAAAAGTCCGTCGCGTCGTTATCCCGACTCCC
GACGACTTTTATGAAGAAGACTATAGTCGATCGGGGGTACCGGAGATTGC
AGTCGCAAAACAAAAGATTGAAGAAGAAAAAGTGAAGCCAAACACAACGA
AGGAAGAAGCATCAACTCTAAACACTAAAGAAGTGAATTCAAAGGACAAG
AATATATTTTATGCACATGACAAACCAAAAAGATGTGCTTATGAGAATGT
GATATCGAATCATACTTTTATTTTGAACAAACAAGCAGGTGTGTTCACGC
ACCTTGGTCACACGAAGGATATTCACCAGTGCAAACAAATGTGTTGCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035989XLOC_035989Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057130-proteinTCONS_00057130-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057130-exon-scaffold_285-1575043694:612158..612351TCONS_00057130-exon-scaffold_285-1575043694:612158..612351Clytia hemisphaericaexon
TCONS_00057130-exon-scaffold_285-1575043694:608540..608799TCONS_00057130-exon-scaffold_285-1575043694:608540..608799Clytia hemisphaericaexon
TCONS_00057130-exon-scaffold_285-1510915933:612158..612351TCONS_00057130-exon-scaffold_285-1510915933:612158..612351Clytia hemisphaericaexon
TCONS_00057130-exon-scaffold_285-1510915933:608540..608799TCONS_00057130-exon-scaffold_285-1510915933:608540..608799Clytia hemisphaericaexon
TCONS_00057130-exon-scaffold_285-1491911889:612158..612351TCONS_00057130-exon-scaffold_285-1491911889:612158..612351Clytia hemisphaericaexon
TCONS_00057130-exon-scaffold_285-1491911889:608540..608799TCONS_00057130-exon-scaffold_285-1491911889:608540..608799Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:608540..612351 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	4.46814	4.88019	1.22026	1.51149	3.37431	6.07577	7.12669	3.70057	4.02909	10.3242	10.2184	6.23954	0	0	2.24012	1.63898	1.4943	1.66043	2.17662	2.63636	0.397119	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057130 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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