TCONS_00057128 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057128
Unique NameTCONS_00057128
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length303

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057128 ID=TCONS_00057128|Name=TCONS_00057128|organism=Clytia hemisphaerica|type=transcript|length=303bp
gttttagatgaaaaaataatgttatcCTAGCAAAACTTGCTTGATGGCAA
TGGATTTTAGATTTGggTAGTTACCATCATACTGCCCGTAACCTAGATCC
ATGAATTATTTTGTaccttcacgtggttggtaTACAATGagaattggctt
aaaatttgtcTGAATTTGTCACGTACAAGGTTCAATATCTTTGCAAACAC
CAACAAATTCTGCTAATAAGATGGACGGGTGAAAAGCATATTTAACTCAA
AGGAAACAACAATGGAATCTGATGTCATGGTTTGTTTGCAGTTGGATTGA
GGC
Run BLAST on NCBI

transcript from alignment at scaffold_285:597318..598037-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057128 ID=TCONS_00057128|Name=TCONS_00057128|organism=Clytia hemisphaerica|type=transcript|length=720bp|location=Sequence derived from alignment at scaffold_285:597318..598037- (Clytia hemisphaerica)
GTTTTAGATGAAAAAATAATGTTATCCTAGCAAAACTTGCTTGATGGCAA
TGGATTTTAGATTTGGTAAGTACGCTAAATTATCCTTGATGCTTTTTTAG
CTTCTACTGACACTGAGGAAAAATAATTTTGTTGGGGTTGAAATTTCAAG
TTTTTGTATGTAACAGAAAATTGCAATCAAAGTTCTAATATTTTTACTTA
TGTAATTTATAAAACTATGACTCTGACCGGTTTGGCTCTGACCGGTTAGT
AGATTTTCTCTGACCAGTTAGTAGATTGGCTCTGACCGGTTAATAGATTG
GCTCTGACCGGTTAATAGATTGGCTCTGACCGGTTAATAGATTGTCCAGT
TATATAAGATTTATTTCACCGGTTTTTGTCAGTGGTCGGTGGAATTAAGA
TTTGTTGTTTGTGTTCTGTATTTGTTCATGATAGCTTGCTGCAAAGATCC
TAATTCCCATTTTCATTATTATATACTTTCAGGGTAGTTACCATCATACT
GCCCGTAACCTAGATCCATGAATTATTTTGTACCTTCACGTGGTTGGTAT
ACAATGAGAATTGGCTTAAAATTTGTCTGAATTTGTCACGTACAAGGTTC
AATATCTTTGCAAACACCAACAAATTCTGCTAATAAGATGGACGGGTGAA
AAGCATATTTAACTCAAAGGAAACAACAATGGAATCTGATGTCATGGTTT
GTTTGCAGTTGGATTGAGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035987XLOC_035987Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057128-exon-scaffold_285-1575043694:597973..598037TCONS_00057128-exon-scaffold_285-1575043694:597973..598037Clytia hemisphaericaexon
TCONS_00057128-exon-scaffold_285-1575043694:597318..597555TCONS_00057128-exon-scaffold_285-1575043694:597318..597555Clytia hemisphaericaexon
TCONS_00057128-exon-scaffold_285-1510915933:597973..598037TCONS_00057128-exon-scaffold_285-1510915933:597973..598037Clytia hemisphaericaexon
TCONS_00057128-exon-scaffold_285-1510915933:597318..597555TCONS_00057128-exon-scaffold_285-1510915933:597318..597555Clytia hemisphaericaexon
TCONS_00057128-exon-scaffold_285-1491911889:597973..598037TCONS_00057128-exon-scaffold_285-1491911889:597973..598037Clytia hemisphaericaexon
TCONS_00057128-exon-scaffold_285-1491911889:597318..597555TCONS_00057128-exon-scaffold_285-1491911889:597318..597555Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:597318..598037 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.05891	3.23061	0.820499	1.67068	32.0985	18.7095	18.7573	17.9142	4.86963	5.42525	13.0729	3.5059	7.36212	5.21164	7.77939	7.70332	5.47569	4.64377	4.55486	7.876	12.773	13.7306	8.03341	11.4731	4.29741	8.36662	54.139	45.804	61.1383	49.0648
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057128 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top