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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057092 ID=TCONS_00057092|Name=TCONS_00057092|organism=Clytia hemisphaerica|type=transcript|length=1559bp
ATAACTGGAACCGCCCATTGGTCACATATGGTGAAATACATTACGTAATC
TAACTACATGTTTGTGAATTTGACCCTCAACAGTACAGCCACTTTTCATT
AATTTAGTTACGTTGTTAAGTAAAGTGAGGTTAAATTTAATTACACTTTG
CGCTAGCTTGTGGTAAACCATTTTAGCATGGCTTCAAATGATAAAAGTGG
TGCGCCTCTCATTATTGTGGCTTTTTTTTCGACCAAAAGCAAGTATTTAA
TTCATATGACGGCCATCGAAAAATGTTCTATTCGTGTCACCCACCCGCAt
catttttcgctgattttccaGTGCGGAGATTCCGGTGAGGCAAAATccgg
gaaaagcaatttgttcttataaggtATAGCTGTTTTCTTGATCGCTCTTG
GAGGCCATAAAAAATTGTATTGTTTGCCGCAATTTTGAAATACCTGGGAA
TTTTTCCACCGCCTGTCCACCCGCATGAATTTTTAACATCCGCTGTGACG
CTAACAGagcaatttttcgatggccgtATGCGCAATGTGAACTATATTTA
TTTTGCCTAAATATAGCGCACAAGTTAGAAAATAAATGAGTTTGAGAAAA
TAAATGAGTTTGTTTTTCATGCAActtaactttctttttcttttaattta
ggGAAAGTATACAAGATTACAAATGTAATGGTTGCAAAGTATGATAAGAA
GAAAGTCCTCAAAGTTTCGGAAAATTCTTCAATCCAAGAAATTCATGATA
AACCTGAAATTCCAAAACCAGCAACAACCACTCGCTCATCTGAAAAATGT
TCCGGTATAGTTTGTATGGTCGACCCGAAATCCTTGAATACAAGATTTTT
ATGCGGTAAATGTGAAAAAGAAACACAACGCAATCATGATAACTTGTTTT
ATTGTTGCAATAACATATCAATCGAGTCAGAAATGGTGAAGAAAGAAGAC
GTCATTTTCATGGTGAAATCGTCAGTCGGTGAAGAAAGTCTTAAAATTCA
ATTAAATTCGAAAAAGCATCTGCTGGAAAGTATGGTTGGTGTGCCGACAA
CAAATCCTTTATTTCTCAAGTTATTTATGGGATCCAAAGTTGATGTTACT
TATAAAATGGTTTCAACTGTGAAAGATGTTGTCGACATATCGGATTGTGC
TCAACAATCAACATCTAAATTGGCTCCCCAAAACATTGACGAACAGCCTT
CAACTGACTCTATAAATACAGAAAGTAACTGAACTTTTTTGGATTACGtt
tcagtttgattttttcatttacttgTTTTAGTTATTATGTATGAGTGAAC
CTTGTAAATCTTTTGAAACTCTACTCTAAACCCTTAAGTTTGATGCCGAT
TTCAGTTTTGAAAATCTGAATAACAACCAAAATTATGTTCAAGTGTGAGC
TATTCTCAAACAAATAACACTTTATTCTTTACTGAGatatttaaaattca
aaaccaaCAATGTAAATAGATTTCAGCTTTTTGTTTTTACAGTATTTCTA
ATACTAGCATTTTGTTATGATATCTTTTGTTGTTGTGCTGGCCACAACTC
CATGAATGT Run BLAST on NCBI transcript from alignment at scaffold_285:626613..628171+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057092 ID=TCONS_00057092|Name=TCONS_00057092|organism=Clytia hemisphaerica|type=transcript|length=1559bp|location=Sequence derived from alignment at scaffold_285:626613..628171+ (Clytia hemisphaerica)
ATAACTGGAACCGCCCATTGGTCACATATGGTGAAATACATTACGTAATC
TAACTACATGTTTGTGAATTTGACCCTCAACAGTACAGCCACTTTTCATT
AATTTAGTTACGTTGTTAAGTAAAGTGAGGTTAAATTTAATTACACTTTG
CGCTAGCTTGTGGTAAACCATTTTAGCATGGCTTCAAATGATAAAAGTGG
TGCGCCTCTCATTATTGTGGCTTTTTTTTCGACCAAAAGCAAGTATTTAA
TTCATATGACGGCCATCGAAAAATGTTCTATTCGTGTCACCCACCCGCAt
catttttcgctgattttccaGTGCGGAGATTCCGGTGAGGCAAAATccgg
gaaaagcaatttgttcttataaggtATAGCTGTTTTCTTGATCGCTCTTG
GAGGCCATAAAAAATTGTATTGTTTGCCGCAATTTTGAAATACCTGGGAA
TTTTTCCACCGCCTGTCCACCCGCATGAATTTTTAACATCCGCTGTGACG
CTAACAGagcaatttttcgatggccgtATGCGCAATGTGAACTATATTTA
TTTTGCCTAAATATAGCGCACAAGTTAGAAAATAAATGAGTTTGAGAAAA
TAAATGAGTTTGTTTTTCATGCAActtaactttctttttcttttaattta
ggGAAAGTATACAAGATTACAAATGTAATGGTTGCAAAGTATGATAAGAA
GAAAGTCCTCAAAGTTTCGGAAAATTCTTCAATCCAAGAAATTCATGATA
AACCTGAAATTCCAAAACCAGCAACAACCACTCGCTCATCTGAAAAATGT
TCCGGTATAGTTTGTATGGTCGACCCGAAATCCTTGAATACAAGATTTTT
ATGCGGTAAATGTGAAAAAGAAACACAACGCAATCATGATAACTTGTTTT
ATTGTTGCAATAACATATCAATCGAGTCAGAAATGGTGAAGAAAGAAGAC
GTCATTTTCATGGTGAAATCGTCAGTCGGTGAAGAAAGTCTTAAAATTCA
ATTAAATTCGAAAAAGCATCTGCTGGAAAGTATGGTTGGTGTGCCGACAA
CAAATCCTTTATTTCTCAAGTTATTTATGGGATCCAAAGTTGATGTTACT
TATAAAATGGTTTCAACTGTGAAAGATGTTGTCGACATATCGGATTGTGC
TCAACAATCAACATCTAAATTGGCTCCCCAAAACATTGACGAACAGCCTT
CAACTGACTCTATAAATACAGAAAGTAACTGAACTTTTTTGGATTACGtt
tcagtttgattttttcatttacttgTTTTAGTTATTATGTATGAGTGAAC
CTTGTAAATCTTTTGAAACTCTACTCTAAACCCTTAAGTTTGATGCCGAT
TTCAGTTTTGAAAATCTGAATAACAACCAAAATTATGTTCAAGTGTGAGC
TATTCTCAAACAAATAACACTTTATTCTTTACTGAGatatttaaaattca
aaaccaaCAATGTAAATAGATTTCAGCTTTTTGTTTTTACAGTATTTCTA
ATACTAGCATTTTGTTATGATATCTTTTGTTGTTGTGCTGGCCACAACTC
CATGAATGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057092-exon-scaffold_285-1491911889:626613..628171 | TCONS_00057092-exon-scaffold_285-1491911889:626613..628171 | Clytia hemisphaerica | exon |
| TCONS_00057092-exon-scaffold_285-1510915933:626613..628171 | TCONS_00057092-exon-scaffold_285-1510915933:626613..628171 | Clytia hemisphaerica | exon |
| TCONS_00057092-exon-scaffold_285-1575043694:626613..628171 | TCONS_00057092-exon-scaffold_285-1575043694:626613..628171 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_285 | supercontig | scaffold_285:626613..628171 + |
Blast
The following BLAST results are available for this feature:
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