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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057085 ID=TCONS_00057085|Name=TCONS_00057085|organism=Clytia hemisphaerica|type=transcript|length=7350bp
GTTCTATGTAAAATAATCAGAAAAGGTATGGTTAGTGAGGAAAGTCTCTT
TTTTGAatgataccttaagggaactattttttgcgggaactaatgtaatt
tttgcggaacttaattttgcagatttttgacttcaaagaaaatttgagcc
gttctgtaaattactccACCTCCACGTTTTtcacatttgaaaaattctgc
gctaacttaattttgcggtttgGGCCAAATCCTCAaaacccgcaaaaatt
agttccctttaaGGTATTACTTTGTAATTTTGATCACAGACATTCAGAGT
TTTTGTGACAAGATCAACACTCTCAAAGCATCACAGGAAGATAAAATTGC
TAGCATAACGGTACTTGACTGGTTAAACTCAGTTTATTTAAATAGAGTGA
CCTGAAAAAgttctttctaaaaaatcaaTAACAGACTTGTGACATTCTTC
TCCCACTAGCCATATTAAATTAGATCCCAAAGCAATACCACCATGTGCAT
GTAGCATTTCAGCGTTGATATAAATTTAAAGTTTGAATGAAAATCAATGA
GCTGCCTTGGAGCTTTCTCTACATTTTAACGAATGAAAGATTTAGATGTA
CATGGCTGTGTAAGAAGGAGTTGCAAATCTCAGCAGCAAAGGGCATGTTT
CATTGAATGCTACAGTTCATCGAAAATCATTTTAAACTGCTCTAGAGTTT
TGCAACTCCTTCGACCCCACCCTCCCCTATTCCCCATATAAAAGTCTAGT
CAACCAAGTCGGTCAAGTCGGTCAAGTGGATCAAGTAGGCTAAGTAGGTT
AAACAGGTTTGAAGAACTAATTGTTGTTTGATATGGCAAAACAAACTCCA
TCGTGATCAGAAAAATACACGTCCTTTACAAAACATTTAActtctttttt
atctttaaagcttTTCTTTAAATAAACATGGTCAAGAAGACCACCTGCTA
GATGAGTTGGTTCATTCACTACCATTTCATATGaagaaagaatatttttc
aagaagTTGTTTGCTGGATCTAGAGCGTCAATGTTGAAATCTCCGACTAT
TATATCAATGTCATCATAAGCTGTCACTTGTCTTAATTCTTCACAAAAAT
CATCTGTCGAGTAATTAGGTGGCTTGTACAAAAGCAAAAGCTTAATAGCC
TTATtactaaatgtttttttcagaaatttaatCATTGTATAGCCAGCTAC
TTTATCACAATCTAAAACTTGAGTCGATGTATTTGAACAGCATGCACTGT
TTTGAAAGCGATTGACTGACATATTGTTATACTCAATATTGAAAGTGTCC
AATTTTTGATCAATGTCACTTGTATCACTTGACAAAGAAAGCTGGGTTTC
AGTGAGGCACAACAAGTCACTGCTAATGAgatcttttgtcttttttatgt
CATCAGCATGTTTTTTCAGAGAGCGTACGTTAAGAAGGGAGACATGCAAA
TATTTAGCAGAGAGTTCTGTAACTGATGAGAAAGAAAGATTATTTTGCAA
AGAACAGTCGTTTCTTAATCGCTCATATTCAAGACCAGCTTCATTGTTTA
CCCGAATCGCGTTTTTATTGTATTCGCCAATTAAGAACAGTCCATTAATG
TCAGTAACTCTAGACAAACTAACATACATTTGACCTTCATTAAAATATCT
TTGATTAAGTAATTCAAAACTAACAACTGCTGATGTGAGAGTCAATCCTT
GTACTTTGTGACTAGTGCATGCGTATGATAAAGTCAGAGGGAATTGTGTT
CTTCGTACCATTAAagtattttcatgttttcttttgttctttcttGTGTC
GAAAGTAGATTCTGCTCTTTCAATTATAGTCCAATTATTTTCTCTGCACA
CATGGTCTAAATTGGATGCTTGTTTACCGGCAGCAGCATCATCAAGCTTG
ACATAAATACCTGATATTATGTTGTTGCTATTAAATTTGAACCTCATAAC
TGTTCCAACTTGGCCATTAACCAATCTATCTGCAATGTCAATGTTTTTTG
TGATAAATACACGAGCACCTACTTTTAAATGAATTATGCGGGCAAGGCCA
CCTGTTTCCCCTGGTCTAGcattttcaatgaatttcaaatcATTATTTGT
CAAATGTTTTGGCACCTCATCTTGTGCAACGATGGAATACTTTTCAGTTG
GTAGCTTATCCAACATTTGTAAATTGTACAAGTCTGCTGGTTTATTTTCT
GCGAAAATATGGGTCGTATTAGCAGGGTAATCTGGACTGTCTGTTGAAAT
AAATCTAGATTTCAAAagctcttctttttctttgtcaaGTTCACCTAAAC
GAATCTGGTTTAAGAGATCAATGAAATCTATATCATCACGCTGCCTCATG
ACAGTTGTTAATTCTGCCATTTGGAAAGTACGCCATAATTCAAATGCAAT
AATATTTTGCATGGATGAACAATCAGCTTTGTATACAGGGTCCCTGTAAA
TTGGTGGAAGTTGATATAAATCACCACACAATAAGACTGACTTTCCAGCA
AAGGGTTTGTCTACACCAAATATTTCACGTAACCTTGAATCTAAGTGTCT
GAACAAACGACTAGAAACCATAGAAATTTCATCAATCATAATTATTTCAA
CACAAGCTAGTTTCTTTTGCAATTTATCTTTGGAAGATGCATTCAATGGA
AATAGCTTTTTGGTAGGGATGATCAGACCAGTGTGTATGGTGGTTCCCGA
GACGTTGATTGCAGCAACAGCTGTTGGTGCAAGTACAAGAATTCTTTCCT
TTGTAGGTTCACCACCTCTGTACATCAAAAGTTTTGACAATGAGTGATAT
ATAGTAGTTAGTAAATGGCTTTTTCCCACGCCTCCGCCACCAGTTAAAAA
AATGTGAAATGGTTCTACACTTTTAGGTGTCTTAgaagaaaggtttttta
caaaGTCCCTTCCCCATTTGTGAATTACATTAAAGACTTCTCTTTGTTGC
TGATTGAGAGATCTAATGCGAGCATTTATTTCATTGTCAGGGAATAAAAT
TGATTCCATTGGTATCGCTGCTCTGAGTTGGGTACCTTCATTGGTATCAT
CATCTGATTCATTATCGTTGGAAGGAGCATTTTCTACCTCAGCATTGGTT
TCATCATTTTCCTGTTGTTCATAGTCATTCATATTGAGTACCATGTCAGT
TCTAAACCTTTGTAAGGCATCATCTACTAAACCGGCATATGGTTGAATCA
AGGCTCTATTGGTCTCAACAGTTTCAATAATACCAGGTTCTAATAGCTTG
GCTGTGTAAGAGTTGTGCTCTTGGGATAGTAATTCATTTTCATCATAGAA
TGGGAGATACAGCATCAAAAGATGATGCGCATAATCTTCTGGCCTTTTAT
TACGGTTAGGTTCATGAAGTCGAAGAACTAGTGGAACTTTCCGACATTTT
AATTTCCCTTTCATTGACCGAAGTGGAACAGTCTTTGGGTAGTtgtttgt
tgtttgatgatttgATTCAATCAAATTATCTTCAAGTTCATTCGGTTGAC
AATCATTTTCATCAGTTTCTTCATACACAATACTATAAAACCTTAAGAAT
TCTGCATAACACATTTTCGATACAGAACTGTAAATTCCATTTGCATCAAT
TGGCCTATCACAATACCTATCTAgcatatttttcttgaaaattgaaGTAC
TATCCTCAGGAAGCtcattaatttcattttcactcAGGCacattttaaac
cttttttctgGTAAATTGGTGTTTGCAAAGGTTACACCTGGGTAAAGTTT
TCTAAGCCATAACTGTGGCATGCTTAGATAGACTGCTTCTTGGACTGATA
CTTCCCGCTTTGAAACATAGGCATGTGCaacagatttcatttgttcataC
TTGTCACCACCATTTTCGAATGCATCTTGAACAGCTTGGGTCATAGCATG
TGAAACTTCATCTTCTGTTTTGGACAGGTATGCACACATGTAAGTGACAG
CCTTGTAATAATTGAACACAGGTTGAATATCTAAATTTGCTTCCCAAGCT
TTTAAACCTTCAGTGAAATAATTATTCACAAAACATGCATTTGTATCACG
CTTCAGATGTATATGAAAATCATCATCCTCAGACACTGAGAGAGCATACT
CATAatcatattttgaaatattaagtGCAAGAAGAACTTCGTCGATAGAT
GGAACTGGACTATAGTTTTCGGCTTCAGTGTCAAAAAAGTTTCGCTTGCT
TGGATTGAGGTTTTCATTGATGTAACTCTTTACTTTAGCTAGTGTTTCTT
TTTGCAATGTCAAAATAGCTTGCTTTTCTTCTTGAGATAATCCTTGAGGT
AAGGGCACAGAAACTATTGTTTGCTCacaaaagaattttccaaaatggAA
TCTGCAAggtgtatttttatatttacgacATGTCTTTGAATGTCGATGTA
ACTGATATGTTGTAACAAGGTGGAATAAATCAGGGTCTTCTTCCTTGGAA
GGAAGATAAACCTTGataattttatcaataaattcaaTGTATTCAGTTTT
AGTCTCTAGAGTCAATTTTGGTGCATTTAAAATCCAGAGAAAAGAATGGA
TATGAGGGCTTCCTcgtacttgaaattcaactcTAATAGCATAATAGGTT
GTTTTACCAAGTGGACCGTCCAAGACAATAGTTTTAAAGAATACTTCAAC
TCTATATTGAAAATGACGAGCAACAAGTACTGGATTACTGTTTAGCAAAT
CACACCTTTCGTGATATGAAAGATTTTCAATAAATTCATTGGTAACATCT
TCACCCTTGAGTTTGTAAATTATGGAAATCATTTCGTTCCAACGAAGATC
CGCGCAACTCAATGTGAAAAAGAAAGTTGGTGGTCCCAATTGCTTGACCA
TTGCTAAAACttcaagctgaaattttttccaataagCCGGGGTTCCTTTG
ACAGTACTCATAAACGCAAAAGCTTTATCATTTGCAATGAATTGCCTCAC
TGTTTCTTTAAAGTTTTGACTCAACATACCTGCATTCAAATTTGAGGCTG
CGACTTTTCTCATCGCAACATTTATTTGATTAGTTAACGAAACTTGTTGA
ATGACAGaattagcaaaaaaaatgtagtctGGGTCTGAAGCAAATTTTTG
AGTATAGTTTAACAAGCGTTGATTGAAATACTTTGAAGGACTTAGCTTAA
CATCCCGTTCGACTTTGTATCCAAATTGACCTTTAGGAAATAAATGAGGA
TGGGCAAGcatttcacaattttcatcATGCAAGATTGAAACAGGCTTTTT
CCCTTGACCAGGTGCTAATGTCAAAATTTCATTGTCTAATTCAGCATCTG
TTGGGGTGTGTGACATGAGGGTTGTTTCATTTGCGCTTGAGCGAAATGCA
TCAAGAGGGTTTGCTGAAGTTTCAAGTTCCTCTAAAACTGTACCATTACT
TTGTGTTTCATTGGCATCAGAGTTTTCCTCTTCTTCATGTTCAATCGTCT
CTTCAGAATTGAAACTTTCAATAGTTGTATCATTTTCTATCATATTCCCA
TCATTAGAAATATCATTCACGTCAATCCTTATGTCCTCATAGAGAGGATT
GTTAGCTTTGANgtcggacaaaattgttgtcggaatactgacgcattcgt
caaatccaacgtcggatatttttactgtcggactagaaagtgtcggacta
ctgacgacctcccTTTTATCCATTTGTAGGGTCTTaaaagatactttgat
ggagGAATTCAAATCAGAGGCTCATGGTGTCCGTACAGAGTATGAGACGT
TACAAAGTCAAATCGAATTGCTCCGTGAACGGAAGAACAAAAATGATATG
TTGAATATGATTGAACTTGAAGAACTTCACTTTTTGTCGTATGATAATTT
CGCTATTTTTGGAAAACTTAAAAGTAAGATTACTGAAAATTGTTATCCCG
GGCGGGTGACGAACCCTGAACAGGTGTTGGCACCAGTTAAACGTTGCTTC
GATGTCCTCAACATGTATTGTCAACTGTCTTTGATGAGACAAATGATGTT
GGGACAACTGGCCGCATTAAgtgaagaaaaacaacaaaagaatcTGCAAG
ATAGTTTCATGAATTTGTTGAAACAAGCACAGACAACAGATCACCAGgtt
TTGAATTTCCTTGCCAAGCCTATGGAGCACCCTGGCGCCCGATACGTGAT
TTATTTGCTTTACGCGCGTCAACACCAGTATCCAATCATTGTTGAGTACT
TACAACGTTTGGCAATCCGAGATGAAGTGGTTTCAAAAGACAATGTAgaa
attcgaacaaattttgaTAAGCAAAACGCTATGTTTTGTAGCGAAGAGTA
TTTACAAGGGAACTGCCGCTTAATCAAAAAGGAATCAGAAGGCAGTATAG
GTCATCCAGACGCCTTTCCAGAAAACTGGGGAAGTATCACCAAATCTATG
TTCATTTCACCAGACGTCCGCGTCAAAGCTAAAAACGTTGACAGTAAAGA
ATATATGGGTCCTTTTCATGGTCTTGCTGTTTTCTCTGGTGACGAACTTG
AGAAGATGAGTGAGATTCAAGTACTCCCAGGAACCATTGGAACGACTGAT
ACTGCTGTAATGGTTTGTATAAAAGAAGGCTGGTGTCAAGTTGTTGAAGA
ATTTTCATTTGAGCAAAACCTAAAAACACTTAGTGGCCGTGATTTCAGct
caatcaaaacattgatcatACCTGAAGGATACCAAGTGACATTATACGCA
CAAAATACCATTACAACTAACAGACAACTTGGACCAATATTTGGCCGGAT
GATAGTGACAAAGTTTTGTGATAGTGATTGGGATGAGATATTGGTGAGAA
AATCCGATTCTTCAGCAGCACATTATCCTGTTGTTTGTGATGAAGCAGGT
TTCGGTGGATATTGTCAGCAGCTTGATCAACGGTTCTTGGATAAAAAGAA
AGAGCTTGATTCTCTGGAAGACGTTCAAGAAAAACCACGCAGTGCTCCTG
TCAAATACTCCGTGTGTTCAGCTGATGGAGTGCAATCGATGAAGATTCCG
GCTGGATTCAAAGTCAACCTTTACACCAAAGATGACATTCTCAATGGGCC
TCATACAGGTCCTGCTGAAATGCCGTCTCTTGGTGCCATTGATATCACAA
AGGCCTTGGTGGAGAAAATTTCAGAACCACCAAAGTCACCCGTGAGTAGA
AAAGACgaagagaaaaaatcaaagatcgTTGATGATGAAAACGAAAAGAA
AATCGTTAATTTACTTTCCAAATCAACTCATAAAGAAGTTGACGAGCACT
CTTCAATTGGATCAAAACGTGACATAACGCATAAAAGAAATGCATTGACG
CCAGAGGATATCACCAaagcttttcgaagattccaaaaaaatgaagaatg Run BLAST on NCBI transcript from alignment at scaffold_285:584607..594806+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057085 ID=TCONS_00057085|Name=TCONS_00057085|organism=Clytia hemisphaerica|type=transcript|length=10200bp|location=Sequence derived from alignment at scaffold_285:584607..594806+ (Clytia hemisphaerica)
GTTCTATGTAAAATAATCAGAAAAGGTATGGTTAGTGAGGAAAGTCTCTT
TTTTGAatgataccttaagggaactattttttgcgggaactaatgtaatt
tttgcggaacttaattttgcagatttttgacttcaaagaaaatttgagcc
gttctgtaaattactccACCTCCACGTTTTtcacatttgaaaaattctgc
gctaacttaattttgcggtttgGGCCAAATCCTCAaaacccgcaaaaatt
agttccctttaaGGTATTACTTTGTAATTTTGATCACAGACATTCAGAGT
TTTTGTGACAAGATCAACACTCTCAAAGCATCACAGGAAGATAAAATTGC
TAGCATAACGGTACTTGACTGGTTAAACTCAGTTTATTTAAATAGAGTGA
CCTGAAAAAgttctttctaaaaaatcaaTAACAGACTTGTGACATTCTTC
TCCCACTAGCCATATTAAATTAGATCCCAAAGCAATACCACCATGTGCAT
GTAGCATTTCAGCGTTGATATAAATTTAAAGTTTGAATGAAAATCAATGA
GCTGCCTTGGAGCTTTCTCTACATTTTAACGAATGAAAGATTTAGATGTA
CATGGCTGTGTAAGAAGGAGTTGCAAATCTCAGCAGCAAAGGGCATGTTT
CATTGAATGCTACAGTTCATCGAAAATCATTTTAAACTGCTCTAGAGTTT
TGCAACTCCTTCGACCCCACCCTCCCCTATTCCCCATATAAAAGTCTAGT
CAACCAAGTCGGTCAAGTCGGTCAAGTGGATCAAGTAGGCTAAGTAGGTT
AAACAGGTTTGAAGAACTAATTGTTGTTTGATATGGCAAAACAAACTCCA
TCGTGATCAGAAAAATACACGTCCTTTACAAAACATTTAActtctttttt
atctttaaagcttTTCTTTAAATAAACATGGTCAAGAAGACCACCTGCTA
GATGAGTTGGTTCATTCACTACCATTTCATATGaagaaagaatatttttc
aagaagTTGTTTGCTGGATCTAGAGCGTCAATGTTGAAATCTCCGACTAT
TATATCAATGTCATCATAAGCTGTCACTTGTCTTAATTCTTCACAAAAAT
CATCTGTCGAGTAATTAGGTGGCTTGTACAAAAGCAAAAGCTTAATAGCC
TTATtactaaatgtttttttcagaaatttaatCATTGTATAGCCAGCTAC
TTTATCACAATCTAAAACTTGAGTCGATGTATTTGAACAGCATGCACTGT
TTTGAAAGCGATTGACTGACATATTGTTATACTCAATATTGAAAGTGTCC
AATTTTTGATCAATGTCACTTGTATCACTTGACAAAGAAAGCTGGGTTTC
AGTGAGGCACAACAAGTCACTGCTAATGAgatcttttgtcttttttatgt
CATCAGCATGTTTTTTCAGAGAGCGTACGTTAAGAAGGGAGACATGCAAA
TATTTAGCAGAGAGTTCTGTAACTGATGAGAAAGAAAGATTATTTTGCAA
AGAACAGTCGTTTCTTAATCGCTCATATTCAAGACCAGCTTCATTGTTTA
CCCGAATCGCGTTTTTATTGTATTCGCCAATTAAGAACAGTCCATTAATG
TCAGTAACTCTAGACAAACTAACATACATTTGACCTTCATTAAAATATCT
TTGATTAAGTAATTCAAAACTAACAACTGCTGATGTGAGAGTCAATCCTT
GTACTTTGTGACTAGTGCATGCGTATGATAAAGTCAGAGGGAATTGTGTT
CTTCGTACCATTAAagtattttcatgttttcttttgttctttcttGTGTC
GAAAGTAGATTCTGCTCTTTCAATTATAGTCCAATTATTTTCTCTGCACA
CATGGTCTAAATTGGATGCTTGTTTACCGGCAGCAGCATCATCAAGCTTG
ACATAAATACCTGATATTATGTTGTTGCTATTAAATTTGAACCTCATAAC
TGTTCCAACTTGGCCATTAACCAATCTATCTGCAATGTCAATGTTTTTTG
TGATAAATACACGAGCACCTACTTTTAAATGAATTATGCGGGCAAGGCCA
CCTGTTTCCCCTGGTCTAGcattttcaatgaatttcaaatcATTATTTGT
CAAATGTTTTGGCACCTCATCTTGTGCAACGATGGAATACTTTTCAGTTG
GTAGCTTATCCAACATTTGTAAATTGTACAAGTCTGCTGGTTTATTTTCT
GCGAAAATATGGGTCGTATTAGCAGGGTAATCTGGACTGTCTGTTGAAAT
AAATCTAGATTTCAAAagctcttctttttctttgtcaaGTTCACCTAAAC
GAATCTGGTTTAAGAGATCAATGAAATCTATATCATCACGCTGCCTCATG
ACAGTTGTTAATTCTGCCATTTGGAAAGTACGCCATAATTCAAATGCAAT
AATATTTTGCATGGATGAACAATCAGCTTTGTATACAGGGTCCCTGTAAA
TTGGTGGAAGTTGATATAAATCACCACACAATAAGACTGACTTTCCAGCA
AAGGGTTTGTCTACACCAAATATTTCACGTAACCTTGAATCTAAGTGTCT
GAACAAACGACTAGAAACCATAGAAATTTCATCAATCATAATTATTTCAA
CACAAGCTAGTTTCTTTTGCAATTTATCTTTGGAAGATGCATTCAATGGA
AATAGCTTTTTGGTAGGGATGATCAGACCAGTGTGTATGGTGGTTCCCGA
GACGTTGATTGCAGCAACAGCTGTTGGTGCAAGTACAAGAATTCTTTCCT
TTGTAGGTTCACCACCTCTGTACATCAAAAGTTTTGACAATGAGTGATAT
ATAGTAGTTAGTAAATGGCTTTTTCCCACGCCTCCGCCACCAGTTAAAAA
AATGTGAAATGGTTCTACACTTTTAGGTGTCTTAgaagaaaggtttttta
caaaGTCCCTTCCCCATTTGTGAATTACATTAAAGACTTCTCTTTGTTGC
TGATTGAGAGATCTAATGCGAGCATTTATTTCATTGTCAGGGAATAAAAT
TGATTCCATTGGTATCGCTGCTCTGAGTTGGGTACCTTCATTGGTATCAT
CATCTGATTCATTATCGTTGGAAGGAGCATTTTCTACCTCAGCATTGGTT
TCATCATTTTCCTGTTGTTCATAGTCATTCATATTGAGTACCATGTCAGT
TCTAAACCTTTGTAAGGCATCATCTACTAAACCGGCATATGGTTGAATCA
AGGCTCTATTGGTCTCAACAGTTTCAATAATACCAGGTTCTAATAGCTTG
GCTGTGTAAGAGTTGTGCTCTTGGGATAGTAATTCATTTTCATCATAGAA
TGGGAGATACAGCATCAAAAGATGATGCGCATAATCTTCTGGCCTTTTAT
TACGGTTAGGTTCATGAAGTCGAAGAACTAGTGGAACTTTCCGACATTTT
AATTTCCCTTTCATTGACCGAAGTGGAACAGTCTTTGGGTAGTtgtttgt
tgtttgatgatttgATTCAATCAAATTATCTTCAAGTTCATTCGGTTGAC
AATCATTTTCATCAGTTTCTTCATACACAATACTATAAAACCTTAAGAAT
TCTGCATAACACATTTTCGATACAGAACTGTAAATTCCATTTGCATCAAT
TGGCCTATCACAATACCTATCTAgcatatttttcttgaaaattgaaGTAC
TATCCTCAGGAAGCtcattaatttcattttcactcAGGCacattttaaac
cttttttctgGTAAATTGGTGTTTGCAAAGGTTACACCTGGGTAAAGTTT
TCTAAGCCATAACTGTGGCATGCTTAGATAGACTGCTTCTTGGACTGATA
CTTCCCGCTTTGAAACATAGGCATGTGCaacagatttcatttgttcataC
TTGTCACCACCATTTTCGAATGCATCTTGAACAGCTTGGGTCATAGCATG
TGAAACTTCATCTTCTGTTTTGGACAGGTATGCACACATGTAAGTGACAG
CCTTGTAATAATTGAACACAGGTTGAATATCTAAATTTGCTTCCCAAGCT
TTTAAACCTTCAGTGAAATAATTATTCACAAAACATGCATTTGTATCACG
CTTCAGATGTATATGAAAATCATCATCCTCAGACACTGAGAGAGCATACT
CATAatcatattttgaaatattaagtGCAAGAAGAACTTCGTCGATAGAT
GGAACTGGACTATAGTTTTCGGCTTCAGTGTCAAAAAAGTTTCGCTTGCT
TGGATTGAGGTTTTCATTGATGTAACTCTTTACTTTAGCTAGTGTTTCTT
TTTGCAATGTCAAAATAGCTTGCTTTTCTTCTTGAGATAATCCTTGAGGT
AAGGGCACAGAAACTATTGTTTGCTCacaaaagaattttccaaaatggAA
TCTGCAAggtgtatttttatatttacgacATGTCTTTGAATGTCGATGTA
ACTGATATGTTGTAACAAGGTGGAATAAATCAGGGTCTTCTTCCTTGGAA
GGAAGATAAACCTTGataattttatcaataaattcaaTGTATTCAGTTTT
AGTCTCTAGAGTCAATTTTGGTGCATTTAAAATCCAGAGAAAAGAATGGA
TATGAGGGCTTCCTcgtacttgaaattcaactcTAATAGCATAATAGGTT
GTTTTACCAAGTGGACCGTCCAAGACAATAGTTTTAAAGAATACTTCAAC
TCTATATTGAAAATGACGAGCAACAAGTACTGGATTACTGTTTAGCAAAT
CACACCTTTCGTGATATGAAAGATTTTCAATAAATTCATTGGTAACATCT
TCACCCTTGAGTTTGTAAATTATGGAAATCATTTCGTTCCAACGAAGATC
CGCGCAACTCAATGTGAAAAAGAAAGTTGGTGGTCCCAATTGCTTGACCA
TTGCTAAAACttcaagctgaaattttttccaataagCCGGGGTTCCTTTG
ACAGTACTCATAAACGCAAAAGCTTTATCATTTGCAATGAATTGCCTCAC
TGTTTCTTTAAAGTTTTGACTCAACATACCTGCATTCAAATTTGAGGCTG
CGACTTTTCTCATCGCAACATTTATTTGATTAGTTAACGAAACTTGTTGA
ATGACAGaattagcaaaaaaaatgtagtctGGGTCTGAAGCAAATTTTTG
AGTATAGTTTAACAAGCGTTGATTGAAATACTTTGAAGGACTTAGCTTAA
CATCCCGTTCGACTTTGTATCCAAATTGACCTTTAGGAAATAAATGAGGA
TGGGCAAGcatttcacaattttcatcATGCAAGATTGAAACAGGCTTTTT
CCCTTGACCAGGTGCTAATGTCAAAATTTCATTGTCTAATTCAGCATCTG
TTGGGGTGTGTGACATGAGGGTTGTTTCATTTGCGCTTGAGCGAAATGCA
TCAAGAGGGTTTGCTGAAGTTTCAAGTTCCTCTAAAACTGTACCATTACT
TTGTGTTTCATTGGCATCAGAGTTTTCCTCTTCTTCATGTTCAATCGTCT
CTTCAGAATTGAAACTTTCAATAGTTGTATCATTTTCTATCATATTCCCA
TCATTAGAAATATCATTCACGTCAATCCTTATGTCCTCATAGAGAGGATT
GTTAGCTTTGANgtcggacaaaattgttgtcggaatactgacgcattcgt
caaatccaacgtcggatatttttactgtcggactagaaagtgtcggacta
ctgacgacctcccTTTTATCCATTTGTAGGGTCTTaaaagatactttgat
ggagGAATTCAAATCAGAGGCTCATGGTGTCCGTACAGAGTATGAGACGT
TACAAAGTCAAATCGAATTGCTCCGTGAACGGAAGAACAAAAATGATATG
TTGAATATGATTGAACTTGAAGAACTTCACTTTTTGTCGTATGATAATTT
CGCTATTTTTGGTAGGTCtcatataattttcatttttcaaaaaattttca
gagaaaaacTTGCCAGTGGAAGTACCTGTAATGCTAGAAtgcattgactt
ccaagcccgaagggctagactcatgactcctggatgggaaatgaagccac
ttatttcccatccagaacgacCGCGCGTGGTTTCTACACAAACGcttgat
tgaaagtaaaatctatccctatatttcaaaaaatgcagtcctcaaaaaca
aaagagCAGCTAAATACAATCCATCGTCATGAATGTAGCGCGTTCTAGAT
ggtaaataagtggcttcattttttcttgcctgggaaaggttagagattct
attctagcccttcgggctttaaactcaatgctagAATGGAAATAGACTTG
CTCACAAAAAGTTAGGTTTCCCATATACATGTAAAATAAGCTACGCGAAT
TACTATTTATTTGAGGAGAGGTTCAGGGGAAAAATTCTGAATTATGAGAC
CAGCTATTATACAACCAATGTACCAACCTCAGCCCAGGAGATGATGTATT
TCTTAAATAATTATATCAATTGTTATTTAGGAAAACTTAAAAGTAAGATT
ACTGAAAATTGTTATCCCGGGCGGGTGACGAACCCTGAACAGGTGTTGGC
ACCAGTTAAACGTTGCTTCGATGTCCTCAACATGTATTGTCAACTGTCTT
TGATGAGACAAATGATGTTGGGACAACTGGCCGCATTAAgtgaagaaaaa
caacaaaagaatcTGCAAGATAGTTTCATGAATTTGTTGAAACAAGCACA
GACAACAGATCACCAGGTATATATGGCAAaaagtaaagttttaaaaaaat
tggacCCCTCCTCCCTCACTTAAAACGCTTCGGTTGGGTTTATGCTTAGA
AAAAGtgttttatattatattatattagaTATTAAAAACGAATCAccgaa
aaaaaccttttttacggTATTTGCTGAAAAAATTAACCCTTATAAACCAT
ATAGTTTTGAAATCGTCTTATCGAGATCTCTTAGAATCTGCCATtagttt
attaaaaaatttgaaacgttaattccccttttattcttgttttttttttt
tttttNCTCCTCCCTCACTTAAAACGCTTCGGTTGGGTTTATGCTTAGAA
AAAGtgttttatattatattatattagaTATTAAAAACGAATCAccgaaa
aaaaccttttttacggTATTTGCTGAAAAAATTAACCCTTATAAACCATA
TAGTTTTGAAATCGTCTTATCGAGATCTCTTAGAATCTGCCATtagttta
ttaaaaaatttgaaacgttaattccccttttattcttgattttttttttt
tttttaatttaggttTTGAATTTCCTTGCCAAGCCTATGGAGCACCCTGG
CGCCCGATACGTGATTTATTTGCTTTACGCGCGTCAACACCAGTATCCAA
TCATTGTTGAGTACTTACAACGTTTGGCAATCCGAGATGAAGTGGTTTCA
AAAGACAATGTAgaaattcgaacaaattttgaTAAGCAAAACGCTATGTT
TTGTAGCGAAGAGTATTTACAAGGGAACTGCCGCTTAATCAAAAAGGTAT
TGAAAAATGACCATTGAGTATTGGACAGAAAAGCCTTTGTTTTGTGGTAA
AGTAATATTTGATGTTTAATTCTTAACCATTTAACTTTTATGTGAAACCT
GCTATAGCTATCAGTAAGAATATTACTCCTCAACGGACATCATTTCTTTC
AGTTCAAAGCTCTGGGATTATAAGGGTTTAAGCGAAGAAATAAAAAGTCC
CAAATCGACGTCCTGGACGTTGCCAAAACATGCTTTCAGTACTCAGAACC
AAAGTTCGAgcattgtatttttttaaatcacctTAATTCTTTCAGTCCCA
TGCACCGTAACTAAGatcaatttcaaagaaaatgacaCTTGGATCTTGGA
TCGGATCTGGAGGTCACCTCTTGTTGGTTGCCTTCTTAGAGCACTTGGTT
TAAAAGTGGAAAAGAAGTTTGCATGTATTACCTTGCATTTTTTCAGGAAT
CAGAAGGCAGTATAGGTCATCCAGACGCCTTTCCAGAAAACTGGGGAAGT
ATCACCAAATCTATGTTCATTTCACCAGACGTCCGCGTCAAAGCTAAAAA
CGTTGACAGTAAAGAATATATGGGTCCTTTTCATGGTCTTGCTGTTTTCT
CTGGTGACGAACTTGAGAAGATGAGTGAGATTCAAGTACTCCCAGGAACC
ATTGGAACGACTGATACTGCTGTAATGGTTTGTATAAGTAagtaaaagtt
atgttttatcACTCAGTCAGCATTGGATGTTAATACAATGTTCATTTGAC
GTTGATGGTCGTTATAGGACCATGCTCGAACGTTATAAGGTTCCACACAG
TTCCGAAACAAAAAGTCCCCGAACACTGTGTGAAAGTAAAACGctttcgc
tccactattttcatcggaacggaacagCTCCGAACGTTTCTTAAATCAGT
ATGATTACTTCCTACCCGTAACAAACACCATACCGGAGTGATGCGAAACT
GTAATGTTTGAATATGGTCTAAGAAATCTAACCAAATCCCATTAAAAAAA
TCAGCTAAATATCGTACCCCGTCAAAGACCCCTTCATTACTTCTGTTTCA
TAGGATTTGTGTTCTAGTACATGATGATTTCTACGTACTAAACTTTCTGA
CtggaaaacaatggaattcgaaTCTCCAGCAAAAAAATCGAAGGAATATA
AATCCCCACGGAGTGAGAAGGGGCTAACTGTAAATTACATATAAAATAGC
ATGTAACAGATGCATAGATCATATGAAATAGGGTAATTGTGTTCCCGCTG
TGATGTACctcgtttttttatttaatgtttTAGAAGAAGGCTGGTGTCAA
GTTGTTGAAGAATTTTCATTTGAGCAAAACCTAAAAACACTTAGTGGCCG
TGATTTCAGctcaatcaaaacattgatcatACCTGAAGGATACCAAGTGA
CATTATACGCACAAAATACCATTACAACTAACAGACAACTTGGACCAATA
TTTGGCCGGATGATAGTGACAAAGTTTTGTGATAGTGATTGGGATGAGAT
ATTGGTGAGAAAATCCGATTCTTCAGCAGCACATTATCCTGTTGTTTGTG
ATGAAGCAGGTTTCGGTGGATATTGTCAGCAGCTTGATCAACGGTTCTTG
GATAAAAAGAAAGAGCTTGATTCTCTGGAAGGTGAGCTTTAGTCTTTTAA
ATGCGACCGTAGTGCAGCAGTAGAGCATTCGGCTACGATTCACAAGGTTG
TGGGtacaacccccagccgggttataccaaagattctcaaaatggtactc
gatgcctctctgcttcatgctcagcaattaagagaaggttGAGCAATCCA
GGGTAAAAAAAATgatgccctcccctaccttcgggtagatagcaaTCGAA
AgaagagccttcgggtcgcttCCGATTCCGGTCACAGATTTTCTTACTTT
AGTTTTAAAGATTCTCTATTTGTCGTCATTCAAGGATGGTTTGCACGCAG
AAATTTCTGGATATAGACGAAGGCCAAGTTGAACTAAATCAGAAATGAGT
TCTAAAAAAGTTTGAGTTTATCGAaccagtgatattcatattggaagttt
agaTGTGGCTTGCTCGGGTTCTGTTCAGGAATGACGTTCTATTTGTGAAA
AGTTGTAATTCGAAACATTCTGATCACTTTTGCATCTCAAAGAGGTTTTT
CCGAATACTCTACTTTGTAGAGCCGTTTTGATATGCCCAAGAAATCTCAG
AATTTATTTGATTTAGTATCGACTGCTAAAGTATGGTCTAAATAAATTGT
ATCTGCTGATTAAGAGAATGTTTACGAAAAGATCAAATCCTTTAAATGAT
GCTTATACTTTCGATTTCAGACGTTCAAGAAAAACCACGCAGTGCTCCTG
TCAAATACTCCGTGTGTTCAGCTGATGGAGTGCAATCGATGAAGATTCCG
GCTGGATTCAAAGTCAACCTTTACACCAAAGATGACATTCTCAATGGGCC
TCATACAGGTCCTGCTGAAATGCCGTCTCTTGGTGCCATTGATATCACAA
AGGCCTTGGTGGAGAAAATTTCAGAACCACCAAAGTCACCCGTGAGTAGA
AAAGACgaagagaaaaaatcaaagatcgTTGATGATGAAAACGAAAAGAA
AATCGTTAATTTACTTTCCAAATCAACTCATAAAGAAGTTGACGAGCACT
CTTCAATTGGATCAAAACGTGACATAACGCATAAAAGAAATGCATTGACG
CCAGAGGATATCACCAaagcttttcgaagattccaaaaaaatgaagaatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057085-exon-scaffold_285-1491911889:584607..590467 | TCONS_00057085-exon-scaffold_285-1491911889:584607..590467 | Clytia hemisphaerica | exon |
| TCONS_00057085-exon-scaffold_285-1510915933:584607..590467 | TCONS_00057085-exon-scaffold_285-1510915933:584607..590467 | Clytia hemisphaerica | exon |
| TCONS_00057085-exon-scaffold_285-1575043694:584607..590467 | TCONS_00057085-exon-scaffold_285-1575043694:584607..590467 | Clytia hemisphaerica | exon |
| TCONS_00057085-exon-scaffold_285-1491911889:591037..591272 | TCONS_00057085-exon-scaffold_285-1491911889:591037..591272 | Clytia hemisphaerica | exon |
| TCONS_00057085-exon-scaffold_285-1510915933:591037..591272 | TCONS_00057085-exon-scaffold_285-1510915933:591037..591272 | Clytia hemisphaerica | exon |
| TCONS_00057085-exon-scaffold_285-1575043694:591037..591272 | TCONS_00057085-exon-scaffold_285-1575043694:591037..591272 | Clytia hemisphaerica | exon |
| TCONS_00057085-exon-scaffold_285-1491911889:591819..592052 | TCONS_00057085-exon-scaffold_285-1491911889:591819..592052 | Clytia hemisphaerica | exon |
| TCONS_00057085-exon-scaffold_285-1510915933:591819..592052 | TCONS_00057085-exon-scaffold_285-1510915933:591819..592052 | Clytia hemisphaerica | exon |
| TCONS_00057085-exon-scaffold_285-1575043694:591819..592052 | TCONS_00057085-exon-scaffold_285-1575043694:591819..592052 | Clytia hemisphaerica | exon |
| TCONS_00057085-exon-scaffold_285-1491911889:592503..592743 | TCONS_00057085-exon-scaffold_285-1491911889:592503..592743 | Clytia hemisphaerica | exon |
| TCONS_00057085-exon-scaffold_285-1510915933:592503..592743 | TCONS_00057085-exon-scaffold_285-1510915933:592503..592743 | Clytia hemisphaerica | exon |
| TCONS_00057085-exon-scaffold_285-1575043694:592503..592743 | TCONS_00057085-exon-scaffold_285-1575043694:592503..592743 | Clytia hemisphaerica | exon |
| TCONS_00057085-exon-scaffold_285-1491911889:593340..593687 | TCONS_00057085-exon-scaffold_285-1491911889:593340..593687 | Clytia hemisphaerica | exon |
| TCONS_00057085-exon-scaffold_285-1510915933:593340..593687 | TCONS_00057085-exon-scaffold_285-1510915933:593340..593687 | Clytia hemisphaerica | exon |
| TCONS_00057085-exon-scaffold_285-1575043694:593340..593687 | TCONS_00057085-exon-scaffold_285-1575043694:593340..593687 | Clytia hemisphaerica | exon |
| TCONS_00057085-exon-scaffold_285-1491911889:594377..594806 | TCONS_00057085-exon-scaffold_285-1491911889:594377..594806 | Clytia hemisphaerica | exon |
| TCONS_00057085-exon-scaffold_285-1510915933:594377..594806 | TCONS_00057085-exon-scaffold_285-1510915933:594377..594806 | Clytia hemisphaerica | exon |
| TCONS_00057085-exon-scaffold_285-1575043694:594377..594806 | TCONS_00057085-exon-scaffold_285-1575043694:594377..594806 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_285 | supercontig | scaffold_285:584607..594806 + |
Blast
BLAST of TCONS_00057085 vs. Swiss-Prot (Human)
Match: PIF1 (ATP-dependent DNA helicase PIF1 OS=Homo sapiens GN=PIF1 PE=1 SV=2) HSP 1 Score: 143.28 bits (360), Expect = 1.321e-34 Identity = 130/463 (28.08%), Postives = 200/463 (43.20%), Query Frame = -1
Query: 1498 IFLTGGGGVGKSHLLTTIYHSLSKLLMYRGGEPTKERILVLAPTAVAAINVSGTTIHTGLIIPTKKLFPLN-----ASSKDKLQKKLACVEIIMIDEISMVSSRLFRHLDSRLREIFGVDKPFAGKSVLLCGDLYQLPPIYRD---PVYKADCSSMQNIIAFELWRTFQMAELTTVMRQRDDIDFIDLLNQIRXXXXX---XXXXXXXKSRFISTDSPDYPANTTHIFAENKPADLYNLQMLDKLPTEKYSIVAQDEVPKHLTNNDLKFIENARPGETGGLARIIHLKVGARVFITKNIDIADRLVNGQVGTVMRFKFNSNNIISGIYVKLDDAAAGKQASNLDHVCRENNWTIIERAESTFDTRKNKRKHENTLMVRRTQFPLTLSYACTSHKVQGLTLTSAVVSFELLNQRYFNEGQMYVSLSRVTDINGLFLIGEYNKNAIRVNNEAGLEYERLRNDCSL 2853
IF TG G GKS+LL I SL PT + A T VAA ++ GTT+H I + + PL A Q L C ++ IDEISMV + LF L++ R + +KPF G +++CGD QLPP+ + P + S + + L ELT V RQ D FI LL +RLG + + S + D T + L N + L +LP + + A D P+ + D + +++++ LK+GA+V + KN+ ++ LVNG G V+ F+ + ++ + V + WT+ + ++ R Q PL L++A + HK QG+TL +S R F GQ YV+LSR + GL ++ +++ A+R + Y LR SL
Sbjct: 224 IFFTGSAGTGKSYLLKRILGSLP---------PTG--TVATASTGVAACHIGGTTLHAFAGIGSGQA-PLAQCVALAQRPGVRQGWLNCQRLV-IDEISMVEADLFDKLEAVARAVRQQNKPFGGIQLIICGDFLQLPPVTKGSQPPRFCFQSKSWKRCVPVTL-------ELTKVWRQADQT-FISLLQAVRLGRCSDEVTRQLQATASHKVGRDG----IVATRLCTHQDDVALTNERRLQELPGKVHRFEAMDSNPELASTLDAQCP----------VSQLLQLKLGAQVMLVKNLSVSRGLVNGARGVVVGFEAEGRGLPQVRFL-----------CGVTEVIHADRWTV---------------QATGGQLLSRQQLPLQLAWAMSIHKSQGMTLDCVEISLG----RVFASGQAYVALSRARSLQGLRVL-DFDPMAVRCDPRVLHFYATLRRGRSL 620
The following BLAST results are available for this feature:
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