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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057079 ID=TCONS_00057079|Name=TCONS_00057079|organism=Clytia hemisphaerica|type=transcript|length=608bp
GCAGTTGAGCTGGCTGGTATATCATACCCCAAGTTTAAACGATTTGCACA
CGCATTAAACTTAAAAGTGATGGGAAAAAGTACCTTCTTCGATTTAAGAG
GTAAACATCTCTTCCCAGAAATACGTGAAACATATAAAGAACATCACGAA
GCTGTCATTAAGGAGGTCAATGCACGAAATAAGCTCGTTTCACTCAGTGT
TGATGGACAGTGCGATAGCCCTGGTTTCAACGCGACATACTGCACTGTCA
CTTCGATGGATGTTGATTCGAACAAAATCTTGGATTTTAAAGTGGTAAAT
GTCAAGGAAAGCAAAAATTCACAAGgAATGGAGAAAGAGGGATTTATTAG
ATCAATCTTGCAGCTTATTGACGAGTTGACCGATCTCAAAGTAATCTCGA
CTGACCGCAACACCCAGATCAAAAAATTGATGGCAACTGACCCCCGGTTC
ATATGGTTACTTCAACAATTCGATCCATGGCATATGGCAAAAGGTTTTTC
GAAGAAAATAATCAAGGCTTCTAAAAAGAAAGGTATCTTATTCGTTTTTG
ACTTCCATGTATATTGAACGACGAACCAgtaatttttcagcaaaatgcTA
CGGTTGCA Run BLAST on NCBI transcript from alignment at scaffold_285:485122..486931+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057079 ID=TCONS_00057079|Name=TCONS_00057079|organism=Clytia hemisphaerica|type=transcript|length=1810bp|location=Sequence derived from alignment at scaffold_285:485122..486931+ (Clytia hemisphaerica)
GCAGTTGAGCTGGCTGGTATATCATACCCCAAGTTTAAACGATTTGCACA
CGCATTAAACTTAAAAGTGATGGGAAAAAGTACCTTCTTCGATTTAAGAG
GTTAGAAAGTTACTTATTAATTAAATACACAGAATATTTTAGACCTAGAA
ATAATGATTTTATGTTACTTTCAGttcagaattattttaaaattgtacGA
TAACCATTCTCATTTCAGGTAAACATCTCTTCCCAGAAATACGTGAAACA
TATAAAGAACATCACGAAGCTGTCATTAAGGAGGTCAATGCACGAAATAA
GCTCGTTTCACTCAGTGTTGATGGACAGTGCGATAGCCCTGGTTTCAACG
CGACATACTGCACTGTCACTTCGATGGATGTTGATTCGAACAAAATCTTG
GATTTTAAAGTGGTAAATGTCAAGGAAAGCAAAAATTCACAAGGTTCGAT
TTATAAATCTACTAAATTACTCAACATGATAATGAAAAGGACACGTGtct
ccttcaaaacaatttgaatCAATACTTCCACCAGGATAACAAGATATGCA
ATTGATCTACCAAACTAGGTCAGCGTGTTTCAAACACACTGTTGGCGATC
GCTTATTTCCGACAAAATCATCGGAGAAAGAACCTTCTGTAGTGTTCACT
AAGAAATTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNAAGGGGATGGGATATAgcctgaaaaaaatttaaaatctct
cCTATTCAGACAAAATGTAAGGAAACTAATGAGTTTATAAAGGTAAGCGA
GTCAAAcattcactttcgatttcaaaaacgagATTTGACTTGTATATCTA
CACTGTTAAAATCGCCCTCAGGCGATCGataaatatataatttttataaa
atacttcatatatttcatattttcaaggAATGGAGAAAGAGGGATTTATT
AGATCAATCTTGCAGCTTATTGACGAGTTGACCGATCTCAAAGTAATCTC
GACTGACCGCAACACCCAGATCAAAAAATTGATGGCAACTGACCCCCGGT
TCATATGGTTACTTCAACAATTCGATCCATGGCATATGGCAAAAGGTTTT
TCGAAGAAAATAATCAAGGCTTCTAAAAAGAAAGGTATCTTATTCGTTTT
TGACTTCCATGTATATTGAACGACGAACCAgtaatttttcagcaaaatgc
TACGGTTGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057079-exon-scaffold_285-1491911889:485122..485221 | TCONS_00057079-exon-scaffold_285-1491911889:485122..485221 | Clytia hemisphaerica | exon |
| TCONS_00057079-exon-scaffold_285-1510915933:485122..485221 | TCONS_00057079-exon-scaffold_285-1510915933:485122..485221 | Clytia hemisphaerica | exon |
| TCONS_00057079-exon-scaffold_285-1575043694:485122..485221 | TCONS_00057079-exon-scaffold_285-1575043694:485122..485221 | Clytia hemisphaerica | exon |
| TCONS_00057079-exon-scaffold_285-1491911889:485340..485564 | TCONS_00057079-exon-scaffold_285-1491911889:485340..485564 | Clytia hemisphaerica | exon |
| TCONS_00057079-exon-scaffold_285-1510915933:485340..485564 | TCONS_00057079-exon-scaffold_285-1510915933:485340..485564 | Clytia hemisphaerica | exon |
| TCONS_00057079-exon-scaffold_285-1575043694:485340..485564 | TCONS_00057079-exon-scaffold_285-1575043694:485340..485564 | Clytia hemisphaerica | exon |
| TCONS_00057079-exon-scaffold_285-1491911889:486649..486931 | TCONS_00057079-exon-scaffold_285-1491911889:486649..486931 | Clytia hemisphaerica | exon |
| TCONS_00057079-exon-scaffold_285-1510915933:486649..486931 | TCONS_00057079-exon-scaffold_285-1510915933:486649..486931 | Clytia hemisphaerica | exon |
| TCONS_00057079-exon-scaffold_285-1575043694:486649..486931 | TCONS_00057079-exon-scaffold_285-1575043694:486649..486931 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_285 | supercontig | scaffold_285:485122..486931 + |
Blast
The following BLAST results are available for this feature:
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