TCONS_00057078 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057078
Unique NameTCONS_00057078
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length657

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057078 ID=TCONS_00057078|Name=TCONS_00057078|organism=Clytia hemisphaerica|type=transcript|length=657bp
AACCACATGGGCTTCACAACCCAAGGCAATGTCTTTGAAAGGTATCGGAA
ATCTGATGGTTACTTCGGCAGTTGAGCTGGCTGGTATATCATACCCCAAG
TTTAAACGATTTGCACACGCATTAAACTTAAAAGTGATGGGAAAAAGTAC
CTTCTTCGATTTAAGAGAAATACGTGAAACATATAAAGAACATCACGAAG
CTGTCATTAAGGAGGTCAATGCACGAAATAAGCTCGTTTCACTCAGTGTT
GATGGACAGTGCGATAGCCCTGGTTTCAACGCGACATACTGCACTGTCAC
TTCGATGGATGTTGATTCGAACAAAATCTTGGATTTTAAAGTGGTAAATG
TCAAGGAAAGCAAAAATTCACAAGgAATGGAGAAAGAGGGATTTATTAGA
TCAATCTTGCAGCTTATTGACGAGTTGACCGATCTCAAAGTAATCTCGAC
TGACCGCAACACCCAGATCAAAAAATTGATGGCAACTGACCCCCGGTTCA
TATGGTTACTTCAACAATTCGATCCATGGCATATGGCAAAAGGTTTTTCG
AAGAAAATAATCAAGGCTTCTAAAAAGAAAGGTATCTTATTCGTTTTTGA
CTTCCATGTATATTGAACGACGAACCAgtaatttttcagcaaaatgcTAC
GGTTGCA
Run BLAST on NCBI

protein sequence of TCONS_00057078-protein

>TCONS_00057078-protein ID=TCONS_00057078-protein|Name=TCONS_00057078-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
TTWASQPKAMSLKGIGNLMVTSAVELAGISYPKFKRFAHALNLKVMGKST
FFDLREIRETYKEHHEAVIKEVNARNKLVSLSVDGQCDSPGFNATYCTVT
SMDVDSNKILDFKVVNVKESKNSQGMEKEGFIRSILQLIDELTDLKVIST
DRNTQIKKLMATDPRFIWLLQQFDPWHMAKGFSKKIIKASKKKGILFVFD
FHVY
Run BLAST on NCBI

transcript from alignment at scaffold_285:484928..486931+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057078 ID=TCONS_00057078|Name=TCONS_00057078|organism=Clytia hemisphaerica|type=transcript|length=2004bp|location=Sequence derived from alignment at scaffold_285:484928..486931+ (Clytia hemisphaerica)
AACCACATGGGCTTCACAACCCAAGGCAATGTCTTTGAAAGGTAAAAACA
CTGGAAACGATGTAACGACACATACGTTACGAAATTGTCAACAGTCTGAA
ATTCTTTGATTCAAACTCTGAATAGTCTCGTTTTAAGGATATTCTCAATA
TTGTATTCTCAATTTCAGGTATCGGAAATCTGATGGTTACTTCGGCAGTT
GAGCTGGCTGGTATATCATACCCCAAGTTTAAACGATTTGCACACGCATT
AAACTTAAAAGTGATGGGAAAAAGTACCTTCTTCGATTTAAGAGGTTAGA
AAGTTACTTATTAATTAAATACACAGAATATTTTAGACCTAGAAATAATG
ATTTTATGTTACTTTCAGttcagaattattttaaaattgtacGATAACCA
TTCTCATTTCAGGTAAACATCTCTTCCCAGAAATACGTGAAACATATAAA
GAACATCACGAAGCTGTCATTAAGGAGGTCAATGCACGAAATAAGCTCGT
TTCACTCAGTGTTGATGGACAGTGCGATAGCCCTGGTTTCAACGCGACAT
ACTGCACTGTCACTTCGATGGATGTTGATTCGAACAAAATCTTGGATTTT
AAAGTGGTAAATGTCAAGGAAAGCAAAAATTCACAAGGTTCGATTTATAA
ATCTACTAAATTACTCAACATGATAATGAAAAGGACACGTGtctccttca
aaacaatttgaatCAATACTTCCACCAGGATAACAAGATATGCAATTGAT
CTACCAAACTAGGTCAGCGTGTTTCAAACACACTGTTGGCGATCGCTTAT
TTCCGACAAAATCATCGGAGAAAGAACCTTCTGTAGTGTTCACTAAGAAA
TTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNAAGGGGATGGGATATAgcctgaaaaaaatttaaaatctctcCTATT
CAGACAAAATGTAAGGAAACTAATGAGTTTATAAAGGTAAGCGAGTCAAA
cattcactttcgatttcaaaaacgagATTTGACTTGTATATCTACACTGT
TAAAATCGCCCTCAGGCGATCGataaatatataatttttataaaatactt
catatatttcatattttcaaggAATGGAGAAAGAGGGATTTATTAGATCA
ATCTTGCAGCTTATTGACGAGTTGACCGATCTCAAAGTAATCTCGACTGA
CCGCAACACCCAGATCAAAAAATTGATGGCAACTGACCCCCGGTTCATAT
GGTTACTTCAACAATTCGATCCATGGCATATGGCAAAAGGTTTTTCGAAG
AAAATAATCAAGGCTTCTAAAAAGAAAGGTATCTTATTCGTTTTTGACTT
CCATGTATATTGAACGACGAACCAgtaatttttcagcaaaatgcTACGGT
TGCA

Coding sequence (CDS) from alignment at scaffold_285:484928..486931+

>TCONS_00057078 ID=TCONS_00057078|Name=TCONS_00057078|organism=Clytia hemisphaerica|type=CDS|length=2460bp|location=Sequence derived from alignment at scaffold_285:484928..486931+ (Clytia hemisphaerica)
ACCACATGGGCTTCACAACCCAAGGCAATGTCTTTGAAAGGTATCGGAAA
TCTGATGGTTACTTCGGCAGTTGAGCTGGCTGGTATATCATACCCCAAGT
TTAAACGATTTGCACACGCATTAAACTTAAAAGTGATGGGAAAAAGTACC
TTCTTCGATTTAAGAGAAATACGTGAAACATATAAAGAACATCACGAAGC
TGTCATTAAGGAGGTCAATGCACGAAATAAGCTCGTTTCACTCAGTGTTG
ATGGACAGTGCGATAGCCCTGGTTTCAACGCGACATACTGCACTGTCACT
TCGATGGATGTTGATTCGAACAAAATCTTGGATTTTAAAGTGGTAAATGT
CAAGGAAAGCAAAAATTCACAAGgAATGGAGAAAGAGGGATTTATTAGAT
CAATCTTGCAGCTTATTGACGAGTTGACCGATCTCAAAGTAATCTCGACT
GACCGCAACACCCAGATCAAAAAATTGATGGCAACTGACCCCCGGTTCAT
ATGGTTACTTCAACAATTCGATCCATGGCATATGGCAAAAGGTTTTTCGA
AGAAAATAATCAAGGCTTCTAAAAAGAAAGGTATCTTATTCGTTTTTGAC
TTCCATGTATATTGAACCACATGGGCTTCACAACCCAAGGCAATGTCTTT
GAAAGGTATCGGAAATCTGATGGTTACTTCGGCAGTTGAGCTGGCTGGTA
TATCATACCCCAAGTTTAAACGATTTGCACACGCATTAAACTTAAAAGTG
ATGGGAAAAAGTACCTTCTTCGATTTAAGAGAAATACGTGAAACATATAA
AGAACATCACGAAGCTGTCATTAAGGAGGTCAATGCACGAAATAAGCTCG
TTTCACTCAGTGTTGATGGACAGTGCGATAGCCCTGGTTTCAACGCGACA
TACTGCACTGTCACTTCGATGGATGTTGATTCGAACAAAATCTTGGATTT
TAAAGTGGTAAATGTCAAGGAAAGCAAAAATTCACAAGgAATGGAGAAAG
AGGGATTTATTAGATCAATCTTGCAGCTTATTGACGAGTTGACCGATCTC
AAAGTAATCTCGACTGACCGCAACACCCAGATCAAAAAATTGATGGCAAC
TGACCCCCGGTTCATATGGTTACTTCAACAATTCGATCCATGGCATATGG
CAAAAGGTTTTTCGAAGAAAATAATCAAGGCTTCTAAAAAGAAAGGTATC
TTATTCGTTTTTGACTTCCATGTATATTGAACCACATGGGCTTCACAACC
CAAGGCAATGTCTTTGAAAGGTATCGGAAATCTGATGGTTACTTCGGCAG
TTGAGCTGGCTGGTATATCATACCCCAAGTTTAAACGATTTGCACACGCA
TTAAACTTAAAAGTGATGGGAAAAAGTACCTTCTTCGATTTAAGAGAAAT
ACGTGAAACATATAAAGAACATCACGAAGCTGTCATTAAGGAGGTCAATG
CACGAAATAAGCTCGTTTCACTCAGTGTTGATGGACAGTGCGATAGCCCT
GGTTTCAACGCGACATACTGCACTGTCACTTCGATGGATGTTGATTCGAA
CAAAATCTTGGATTTTAAAGTGGTAAATGTCAAGGAAAGCAAAAATTCAC
AAGgAATGGAGAAAGAGGGATTTATTAGATCAATCTTGCAGCTTATTGAC
GAGTTGACCGATCTCAAAGTAATCTCGACTGACCGCAACACCCAGATCAA
AAAATTGATGGCAACTGACCCCCGGTTCATATGGTTACTTCAACAATTCG
ATCCATGGCATATGGCAAAAGGTTTTTCGAAGAAAATAATCAAGGCTTCT
AAAAAGAAAGGTATCTTATTCGTTTTTGACTTCCATGTATATTGAACCAC
ATGGGCTTCACAACCCAAGGCAATGTCTTTGAAAGGTATCGGAAATCTGA
TGGTTACTTCGGCAGTTGAGCTGGCTGGTATATCATACCCCAAGTTTAAA
CGATTTGCACACGCATTAAACTTAAAAGTGATGGGAAAAAGTACCTTCTT
CGATTTAAGAGAAATACGTGAAACATATAAAGAACATCACGAAGCTGTCA
TTAAGGAGGTCAATGCACGAAATAAGCTCGTTTCACTCAGTGTTGATGGA
CAGTGCGATAGCCCTGGTTTCAACGCGACATACTGCACTGTCACTTCGAT
GGATGTTGATTCGAACAAAATCTTGGATTTTAAAGTGGTAAATGTCAAGG
AAAGCAAAAATTCACAAGgAATGGAGAAAGAGGGATTTATTAGATCAATC
TTGCAGCTTATTGACGAGTTGACCGATCTCAAAGTAATCTCGACTGACCG
CAACACCCAGATCAAAAAATTGATGGCAACTGACCCCCGGTTCATATGGT
TACTTCAACAATTCGATCCATGGCATATGGCAAAAGGTTTTTCGAAGAAA
ATAATCAAGGCTTCTAAAAAGAAAGGTATCTTATTCGTTTTTGACTTCCA
TGTATATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035957XLOC_035957Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057078-exon-scaffold_285-1491911889:484928..484968TCONS_00057078-exon-scaffold_285-1491911889:484928..484968Clytia hemisphaericaexon
TCONS_00057078-exon-scaffold_285-1510915933:484928..484968TCONS_00057078-exon-scaffold_285-1510915933:484928..484968Clytia hemisphaericaexon
TCONS_00057078-exon-scaffold_285-1575043694:484928..484968TCONS_00057078-exon-scaffold_285-1575043694:484928..484968Clytia hemisphaericaexon
TCONS_00057078-exon-scaffold_285-1491911889:485096..485221TCONS_00057078-exon-scaffold_285-1491911889:485096..485221Clytia hemisphaericaexon
TCONS_00057078-exon-scaffold_285-1510915933:485096..485221TCONS_00057078-exon-scaffold_285-1510915933:485096..485221Clytia hemisphaericaexon
TCONS_00057078-exon-scaffold_285-1575043694:485096..485221TCONS_00057078-exon-scaffold_285-1575043694:485096..485221Clytia hemisphaericaexon
TCONS_00057078-exon-scaffold_285-1491911889:485358..485564TCONS_00057078-exon-scaffold_285-1491911889:485358..485564Clytia hemisphaericaexon
TCONS_00057078-exon-scaffold_285-1510915933:485358..485564TCONS_00057078-exon-scaffold_285-1510915933:485358..485564Clytia hemisphaericaexon
TCONS_00057078-exon-scaffold_285-1575043694:485358..485564TCONS_00057078-exon-scaffold_285-1575043694:485358..485564Clytia hemisphaericaexon
TCONS_00057078-exon-scaffold_285-1491911889:486649..486931TCONS_00057078-exon-scaffold_285-1491911889:486649..486931Clytia hemisphaericaexon
TCONS_00057078-exon-scaffold_285-1510915933:486649..486931TCONS_00057078-exon-scaffold_285-1510915933:486649..486931Clytia hemisphaericaexon
TCONS_00057078-exon-scaffold_285-1575043694:486649..486931TCONS_00057078-exon-scaffold_285-1575043694:486649..486931Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057078-proteinTCONS_00057078-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:484928..486931 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.158223	0.158003	0	0	0	0	0.365598	0.371294	0	0.153133	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057078 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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